{ "bcoid": "GLY_000394", "title": "Rat Protein Names (NCBI RefSeq)", "description": "The Rat Protein Names (NCBI RefSeq) dataset contains rat [taxid:10116] protein names (primary and other ...", "filename": "rat_protein_proteinnames_refseq.csv", "filetype": "csv", "categories": { "species": "Rattus norvegicus", "molecule": "Protein", "tags": "Protein Names", "file_type": "csv", "status": "Reviewed", "scope": "internal" }, "minitable": { "content": [ [ "Q5RJK9-1...", "NP_001008331..." ], [ "Q5RJK9-1...", "NP_001008331..." ] ], "headers": [ "uniprotkb_ca...", "refseq_ac..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "uniprotkb_canonical_ac" }, { "type": "string", "label": "refseq_ac" }, { "type": "string", "label": "refseq_protein_name" } ], [ "Q5RJK9-1", "NP_001008331.1", "DNA-directed RNA polymerases I and III subunit RPAC1" ], [ "Q5RJK9-1", "NP_001008331.1", "RNA polymerase 1-1; polymerase (RNA) I polypeptide C; polymerase (RNA) I subunit C; RNA polymerase I subunit C" ], [ "Q5RJK8-1", "NP_001011906.1", "acyl-CoA-binding domain-containing protein 6" ], [ "Q5RJK8-1", "NP_001011906.1", "acyl-Coenzyme A binding domain containing 6" ], [ "D3ZB44-1", "XP_006223048.1", "zinc finger protein 324A" ], [ "Q5RJK0-1", "NP_001008359.1", "transmembrane protein 106C" ], [ "Q5RJK3-1", "NP_001013108.1", "tRNA methyltransferase 10 homolog B" ], [ "Q5RJK3-1", "NP_001013108.1", "RNA (guanine-9-)-methyltransferase domain-containing protein 3; RNA (guanine-9-) methyltransferase domain containing 3; tRNA (guanine(9)-N(1))-methyltransferase TRMT10B" ], [ "P30349-1", "NP_001025202.1", "leukotriene A-4 hydrolase" ], [ "P30349-1", "NP_001025202.1", "LTA-4 hydrolase" ], [ "Q5RJK5-1", "NP_001008314.2", "chromobox protein homolog 3" ], [ "Q5RJK5-1", "NP_001008314.2", "HP1 gamma; heterochromatin protein 1 gamma; chromobox homolog 3 (HP1 gamma homolog, Drosophila)" ], [ "D3ZB48-1", "NP_001101416.1", "protein Hook homolog 1" ], [ "D3ZB48-1", "NP_001101416.1", "hook homolog 1" ], [ "Q5RJK6-1", "NP_001012131.1", "inositol polyphosphate 1-phosphatase" ], [ "Q6MG55-1", "NP_997696.1", "phosphatidylserine lipase ABHD16A" ], [ "Q6MG55-1", "NP_997696.1", "protein BAT5; abhydrolase domain-containing protein 16A; alpha/beta hydrolase domain-containing protein 16A; protein ABHD16A; monoacylglycerol lipase ABHD16A; HLA-B-associated transcript 5 homolog; HLA-B associated transcript 5" ], [ "Q6MG56-1", "NP_001003691.1", "lymphocyte antigen 6 complex locus protein G6f precursor" ], [ "Q6MG56-1", "NP_001003691.1", "lymphocyte antigen 6 complex, locus G6F; lymphocyte antigen 6 complex locus protein G6f" ], [ "A0A0G2K0H3-1", "XP_017448147.1", "low-density lipoprotein receptor-related protein 6 isoform X1" ], [ "Q5XIH0-1", "NP_001014107.1", "repressor of RNA polymerase III transcription MAF1 homolog" ], [ "Q5XIH0-1", "NP_001014107.1", "MAF1 negative regulator of RNA polymerase III" ], [ "Q6MG51-1", "NP_001003975.1", "uncharacterized protein C6orf47 homolog" ], [ "F1M2W7-1", "NP_001100387.1", "peptidase inhibitor 15 precursor" ], [ "F1M2W7-1", "NP_001100387.1", "protease inhibitor 15" ], [ "Q6MG53-1", "NP_001001934.1", "lymphocyte antigen 6 complex locus protein G5b precursor" ], [ "Q6MG53-1", "NP_001001934.1", "lymphocyte antigen 6 complex, locus G5B; lymphocyte antigen 6 complex G5B; lymphocyte antigen 6 complex locus protein G5b" ], [ "D4AAV0-1", "NP_001102329.1", "interferon regulatory factor 6" ], [ "P20961-1", "NP_036752.1", "plasminogen activator inhibitor 1 precursor" ], [ "P20961-1", "NP_036752.1", "PAI; PAI-1; serine (or cysteine) proteinase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 1; serine (or cysteine) proteinase inhibitor, member 1; serine (or cysteine) proteinase inhibitor, clade E, member 1; serine (or cysteine) peptidase inhibitor, clade E, member 1; endothelial plasminogen activator inhibitor; plasminogen activator inhibitor 1; serpin E1; serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 1" ], [ "Q6MG59-1", "NP_001003976.1", "megakaryocyte and platelet inhibitory receptor G6b precursor" ], [ "Q6MG59-1", "NP_001003976.1", "protein G6b; immunoreceptor tyrosine-based inhibitory motif (ITIM) containing platelet receptor" ], [ "Q4KLP0-1", "NP_001020891.1", "probable 2-oxoglutarate dehydrogenase E1 component DHKTD1, mitochondrial" ], [ "Q4KLP0-1", "NP_001020891.1", "dehydrogenase E1 and transketolase domain-containing protein 1; probable 2-oxoglutarate dehydrogenase E1 component DHKTD1, mitochondrial-like" ], [ "M0RAP6-1", "XP_002725195.1", "protein TASOR isoform X4" ], [ "M0RAP5-1", "NP_001258102.1", "myotubularin-related protein 5" ], [ "A0A0G2JVG8-1", "NP_001000969.1", "olfactory receptor Olr410" ], [ "A0A0G2JVG8-1", "NP_001000969.1", "olfactory receptor gene Olr410" ], [ "F1M1W4-1", "NP_001101860.2", "NEDD4 family-interacting protein 2" ], [ "P34997-1", "NP_445755.1", "C-X-C chemokine receptor type 5" ], [ "P34997-1", "NP_445755.1", "CXC-R5; CXCR-5; chemochine (C-X-C motif) receptor 5; chemokine (C-X-C motif) receptor 5; neurolymphatic receptor; burkitt lymphoma receptor 1 homolog" ], [ "Q9WUD9-1", "NP_114183.1", "proto-oncogene tyrosine-protein kinase Src" ], [ "Q9WUD9-1", "NP_114183.1", "tyrosine protein kinase pp60-c-src; Rous sarcoma oncogene; tyrosine protein kinase c-src; v-src sarcoma (Schmidt-Ruppin A-2) viral oncogene homolog; c-Src; p60-Src; pp60c-src; proto-oncogene c-Src; v-src avian sarcoma (Schmidt-Ruppin A-2) viral oncogene homolog" ], [ "Q8R553-1", "NP_599203.1", "calsyntenin-3 precursor" ], [ "Q8R553-1", "NP_599203.1", "alc-beta; alcadein-beta" ], [ "Q925Q4-1", "NP_598303.1", "glycoprotein hormone alpha-2 precursor" ], [ "Q925Q4-1", "NP_598303.1", "glycoprotein hormone alpha 2; cysteine knot protein; thyrostimulin subunit alpha; putative secreted protein ZSIG51; glycoprotein-alpha 2" ], [ "Q9QX69-1", "NP_446175.1", "glutathione S-transferase LANCL1" ], [ "Q9QX69-1", "NP_446175.1", "lanC (bacterial lantibiotic synthetase component C)-like 1; lanC-like protein 1; 40 kDa erythrocyte membrane protein; LanC-like 1(bacterial); LanC lantibiotic synthetase component C-like 1" ], [ "P30348-1", "NP_446099.1", "C-X-C motif chemokine 2 precursor" ], [ "P30348-1", "NP_446099.1", "MIP2; CINC-3; small inducible cytokine subfamily, member 2; chemokine (C-X-C motif) ligand 2; macrophage inflammatory protein 2; cytokine-induced neutrophil chemoattractant 3; C-X-C motif chemokine 2" ], [ "Q9WUD2-1", "NP_001257726.1", "transient receptor potential cation channel subfamily V member 2" ], [ "Q9WUD2-1", "NP_001257726.1", "VRL-1; OTRPC2; osm-9-like TRP channel 2; stretch-activated channel 2B; vanilloid receptor-like protein 1" ], [ "A0A0G2JUK9-1", "NP_001000297.1", "olfactory receptor Olr465" ], [ "A0A0G2JUK9-1", "NP_001000297.1", "olfactory receptor gene Olr465" ], [ "D3ZLV0-1", "NP_001000397.1", "olfactory receptor Olr434" ], [ "D3ZLV0-1", "NP_001000397.1", "olfactory receptor gene Olr434" ], [ "D3ZLV5-1", "NP_001102138.1", "AT-hook-containing transcription factor" ], [ "Q8VHI8-1", "NP_543173.1", "vesicle transport protein SEC20" ], [ "Q8VHI8-1", "NP_543173.1", "BCL2/adenovirus E1B 19kDa-interacting protein 1; BCL2/adenovirus E1B interacting protein 1-like 1" ], [ "D3ZLV9-1", "NP_001127976.1", "kelch-like protein 23" ], [ "D3ZLV9-1", "NP_001127976.1", "kelch-like 23" ], [ "A0A096MJY4-1", "XP_006224017.1", "myocyte-specific enhancer factor 2C isoform X1" ], [ "O88181-1", "NP_075245.1", "barH-like 2 homeobox protein" ], [ "O88181-1", "NP_075245.1", "homeobox protein B-H1; bar-class homeodomain protein MBH1; BarH-class homeodomain transcription factor" ], [ "A0A096MJY1-1", "XP_001077762.3", "glypican-6 isoform X2" ], [ "Q2KMM2-1", "NP_001034467.1", "trafficking protein particle complex subunit 1" ], [ "Q2KN99-1", "NP_001034544.1", "cytospin-A" ], [ "Q2KN99-1", "NP_001034544.1", "SPECC1-like protein; 28S ribosomal protein S7, mitochondrial-like" ], [ "D4A838-1", "NP_001000505.1", "olfactory receptor Olr318" ], [ "D4A838-1", "NP_001000505.1", "olfactory receptor gene Olr318" ], [ "Q5M808-1", "NP_001013919.1", "protein Hikeshi" ], [ "Q5M808-1", "NP_001013919.1", "lethal, Chr 7, Rinchik 6; Hikeshi, heat shock protein nuclear import factor; uncharacterized protein C11orf73 homolog" ], [ "D3ZKU2-1", "NP_001000156.1", "olfactory receptor Olr122" ], [ "D3ZKU2-1", "NP_001000156.1", "olfactory receptor gene Olr122" ], [ "O55043-1", "NP_001106994.1", "rho guanine nucleotide exchange factor 7 isoform b" ], [ "O55043-1", "NP_001106994.1", "beta-Pix; PAK-interacting exchange factor beta; Rho guanine nucleotide exchange factor (GEF) 7" ], [ "D4A831-1", "NP_001100368.1", "adhesion G protein-coupled receptor B3" ], [ "D4A831-1", "NP_001100368.1", "brain-specific angiogenesis inhibitor 3" ], [ "D4A832-1", "XP_006234529.2", "solute carrier family 43 member 3 isoform X1" ], [ "D3ZZY5-1", "NP_001099788.2", "p53-induced death domain-containing protein 1" ], [ "D3ZZY5-1", "NP_001099788.2", "leucine-rich repeats and death domain containing" ], [ "D4A834-1", "NP_001099957.1", "proteoglycan 3 precursor" ], [ "B0JYS4-1", "NP_001116254.1", "MAPK-interacting and spindle-stabilizing protein" ] ] }, "readme": "Name\n - Rat Protein Names (NCBI RefSeq)\n\nVersion\n - 1.8.25\n\nCreated on\n - 2020-03-15T13:32:44.009025\n\nModified on\n - 2020-03-16T11:19:19.372957\n\nCreated by\n - Jeet Vora [jeetvora@gwu.edu], Rahi Navelkar [rsn13@gwu.edu], Robel Kahsay [rykahsay@gwu.edu]\n\nAuthors\n - \n\nChecksum\n - \n\nUsability Domain\n - The Rat Protein Names (NCBI RefSeq) dataset contains rat [taxid:10116] protein names (primary and other alternative/synonym protein names) from NCBI RefSeq database. The dataset is derived from NCBI RefSeq Release 96, September 9, 2019. The dataset is derived from NCBI RefSeq Release 96, September 9, 2019. If you use this dataset please provide proper attribution to NCBI RefSeq and GlyGen\n\nDescription Domain\n Keywords\n - protein names\n - NCBI RefSeq\n\n Pipeline Steps\n - Step-1: The script parses the NCBI RefSeq gpff files to extract the protein names and then maps the NCBI RefSeq accesion to the UniProtKB Canonical accessions\n\nExecution Domain\n Scripts - https://github.com/GW-HIVE/glygen-backend-integration/blob/master/pipeline/integrator/make-protein-dataset.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: refseq_protein_all_10116.gpff\n URI: https://data.glygen.org/ln2data/releases/data/v-1.8.25/source/refseq_protein_all_10116.gpff\n Name: rat_protein_xref_refseq.csv\n URI: https://data.glygen.org/ln2data/releases/data/v-1.8.25/reviewed/rat_protein_xref_refseq.csv\n Output Subdomain\n Name: rat_protein_proteinnames_refseq.csv\n URI: http://data.glygen.org/ln2data/releases/data/v-1.8.25/reviewed/rat_protein_proteinnames_refseq.csv\n Name: rat_protein_proteinnames_refseq.stat.csv\n URI: http://data.glygen.org/ln2data/releases/data/v-1.8.25/reviewed/rat_protein_proteinnames_refseq.stat.csv\n\nFields\n Name: \"src_xref_key\"\n Description: \"Source Xref key\"\n Unique Values: \"1\"\n Name: \"xref_id\"\n Description: \"ID of the X-ref\"\n Unique Values: \"119\"\n Name: \"title\"\n Description: \"Title of the published article in the journal\"\n Unique Values: \"119\"\n Name: \"src_xref_id\"\n Description: \"Source X-ref ID\"\n Unique Values: \"120\"\n Name: \"journal_name\"\n Description: \"The name of the journal in which the article is published\"\n Unique Values: \"49\"\n Name: \"authors\"\n Description: \"NA\"\n Unique Values: \"118\"\n Name: \"publication_date\"\n Description: \"Contains the full date on which the issue of the journal was published. Sourced from MEDLINE/PubMed data element(fields) description.\"\n Unique Values: \"117\"\n Name: \"glytoucan_ac\"\n Description: \"Unique accession assigned to the registered glycan structure in GlyTouCan database\"\n Unique Values: \"115\"\n Name: \"xref_key\"\n Description: \"Source key associated to the xref_id\"\n Unique Values: \"1\"", "downloadurl": "/ln2data/releases/data/v-1.8.25/reviewed/rat_protein_proteinnames_refseq.csv" }