{ "bcoid": "GLY_000236", "title": "Human UniProtKB Xref IntAct", "description": "The Human UniProtKB Xref IntAct dataset contains human [taxid:9606] UniProtKB canonical accessions cross-referenced ...", "filename": "human_protein_xref_intact.csv", "filetype": "csv", "categories": { "species": "Homo sapiens", "molecule": "Protein", "tags": "Intact", "file_type": "csv", "status": "Reviewed", "scope": "internal" }, "minitable": { "content": [ [ "Q8TBF5-1...", "protein_xref..." ], [ "Q8TBF4-1...", "protein_xref..." ] ], "headers": [ "uniprotkb_ca...", "xref_key..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "uniprotkb_canonical_ac" }, { "type": "string", "label": "xref_key" }, { "type": "string", "label": "xref_id" }, { "type": "string", "label": "xref_label" } ], [ "Q8TBF5-1", "protein_xref_intact", "Q8TBF5", "" ], [ "Q8TBF4-1", "protein_xref_intact", "Q8TBF4", "" ], [ "Q9NRJ4-1", "protein_xref_intact", "Q9NRJ4", "" ], [ "Q9NQ79-1", "protein_xref_intact", "Q9NQ79", "" ], [ "Q9NVL8-1", "protein_xref_intact", "Q9NVL8", "" ], [ "Q9NRQ5-1", "protein_xref_intact", "Q9NRQ5", "" ], [ "P30613-1", "protein_xref_intact", "P30613", "" ], [ "Q5H9L4-1", "protein_xref_intact", "Q5H9L4", "" ], [ "Q9BZL4-1", "protein_xref_intact", "Q9BZL4", "" ], [ "Q9NVL1-1", "protein_xref_intact", "Q9NVL1", "" ], [ "Q9NQ75-1", "protein_xref_intact", "Q9NQ75", "" ], [ "P20930-1", "protein_xref_intact", "P20930", "" ], [ "P20933-1", "protein_xref_intact", "P20933", "" ], [ "P20936-1", "protein_xref_intact", "P20936", "" ], [ "Q8NFX7-1", "protein_xref_intact", "Q8NFX7", "" ], [ "Q9UM21-1", "protein_xref_intact", "Q9UM21", "" ], [ "Q496A3-1", "protein_xref_intact", "Q496A3", "" ], [ "P40617-1", "protein_xref_intact", "P40617", "" ], [ "Q70EL4-1", "protein_xref_intact", "Q70EL4", "" ], [ "Q8TBF2-1", "protein_xref_intact", "Q8TBF2", "" ], [ "Q15573-1", "protein_xref_intact", "Q15573", "" ], [ "Q15572-1", "protein_xref_intact", "Q15572", "" ], [ "P23919-1", "protein_xref_intact", "P23919", "" ], [ "Q8NHX9-1", "protein_xref_intact", "Q8NHX9", "" ], [ "A8MU46-1", "protein_xref_intact", "A8MU46", "" ], [ "Q9NXR8-1", "protein_xref_intact", "Q9NXR8", "" ], [ "Q9C0H2-1", "protein_xref_intact", "Q9C0H2", "" ], [ "Q9C0H5-1", "protein_xref_intact", "Q9C0H5", "" ], [ "Q4VXU2-1", "protein_xref_intact", "Q4VXU2", "" ], [ "Q9C0H6-1", "protein_xref_intact", "Q9C0H6", "" ], [ "Q9C0H9-5", "protein_xref_intact", "Q9C0H9", "" ], [ "Q9NXR1-2", "protein_xref_intact", "Q9NXR1", "" ], [ "Q00537-1", "protein_xref_intact", "Q00537", "" ], [ "Q00536-1", "protein_xref_intact", "Q00536", "" ], [ "Q9NXR5-1", "protein_xref_intact", "Q9NXR5", "" ], [ "Q00532-1", "protein_xref_intact", "Q00532", "" ], [ "Q96J66-1", "protein_xref_intact", "Q96J66", "" ], [ "O00244-1", "protein_xref_intact", "O00244", "" ], [ "Q9UBM8-1", "protein_xref_intact", "Q9UBM8", "" ], [ "Q9H2V7-1", "protein_xref_intact", "Q9H2V7", "" ], [ "O00241-1", "protein_xref_intact", "O00241", "" ], [ "O00716-1", "protein_xref_intact", "O00716", "" ], [ "Q8IX01-1", "protein_xref_intact", "Q8IX01", "" ], [ "Q9UBM1-1", "protein_xref_intact", "Q9UBM1", "" ], [ "A8MTA8-1", "protein_xref_intact", "A8MTA8", "" ], [ "Q9UBM4-1", "protein_xref_intact", "Q9UBM4", "" ], [ "P24522-1", "protein_xref_intact", "P24522", "" ], [ "Q13835-1", "protein_xref_intact", "Q13835", "" ], [ "A0AVF1-1", "protein_xref_intact", "A0AVF1", "" ], [ "P40424-1", "protein_xref_intact", "P40424", "" ], [ "P40425-1", "protein_xref_intact", "P40425", "" ], [ "P40426-1", "protein_xref_intact", "P40426", "" ], [ "Q8IZK6-1", "protein_xref_intact", "Q8IZK6", "" ], [ "P40429-1", "protein_xref_intact", "P40429", "" ], [ "P51991-1", "protein_xref_intact", "P51991", "" ], [ "Q13838-1", "protein_xref_intact", "Q13838", "" ], [ "Q8TDW7-3", "protein_xref_intact", "Q8TDW7", "" ], [ "Q5M775-1", "protein_xref_intact", "Q5M775", "" ], [ "Q8WTV0-1", "protein_xref_intact", "Q8WTV0", "" ], [ "P08842-1", "protein_xref_intact", "P08842", "" ], [ "P03891-1", "protein_xref_intact", "P03891", "" ], [ "P48960-1", "protein_xref_intact", "P48960", "" ], [ "P03897-1", "protein_xref_intact", "P03897", "" ], [ "P02768-1", "protein_xref_intact", "P02768", "" ], [ "P20645-1", "protein_xref_intact", "P20645", "" ], [ "P05386-1", "protein_xref_intact", "P05386", "" ], [ "P05387-1", "protein_xref_intact", "P05387", "" ], [ "P24863-1", "protein_xref_intact", "P24863", "" ], [ "P08559-1", "protein_xref_intact", "P08559", "" ], [ "P02760-1", "protein_xref_intact", "P02760", "" ], [ "P02763-1", "protein_xref_intact", "P02763", "" ], [ "P02765-1", "protein_xref_intact", "P02765", "" ], [ "P02766-1", "protein_xref_intact", "P02766", "" ], [ "Q7L266-1", "protein_xref_intact", "Q7L266", "" ], [ "Q9UQ07-1", "protein_xref_intact", "Q9UQ07", "" ], [ "Q9UJ70-1", "protein_xref_intact", "Q9UJ70", "" ], [ "Q9UJ71-1", "protein_xref_intact", "Q9UJ71", "" ], [ "Q9UJ72-1", "protein_xref_intact", "Q9UJ72", "" ], [ "O60508-1", "protein_xref_intact", "O60508", "" ], [ "Q15165-2", "protein_xref_intact", "Q15165", "" ], [ "Q15166-1", "protein_xref_intact", "Q15166", "" ], [ "Q9UJ78-4", "protein_xref_intact", "Q9UJ78", "" ], [ "Q86WA9-1", "protein_xref_intact", "Q86WA9", "" ], [ "P35579-1", "protein_xref_intact", "P35579", "" ] ] }, "readme": "Name\n - Human UniProtKB Xref IntAct\n\nVersion\n - 1.8.25\n\nCreated on\n - 2019-09-06T14:06:38.963796\n\nModified on\n - 2020-04-10T11:44:28.847200\n\nCreated by\n - Jeet Vora [jeetvora@gwu.edu], Rahi Navelkar [rsn13@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Xavier Holmes [xavierh@email.gwu.edu]\n\nAuthors\n - Maria Martin [martin@ebi.ac.uk], Preethi Vasudev [pvasudev@ebi.ac.uk]\n\nChecksum\n - \n\nUsability Domain\n - The Human UniProtKB Xref IntAct dataset contains human [taxid:9606] UniProtKB canonical accessions cross-referenced to IntAct database accessions/identifiers. The dataset is derived from 2019-09 UniProtKB release. If you use this dataset please provide proper attribution to EMBL-EBI-UniProtKB and GlyGen\n - IntAct provides a freely available, open source database system and analysis tools for molecular interaction data. All interactions are derived from literature curation or direct user submissions and are freely available. The IntAct Team also produce the Complex Portal.\n\nDescription Domain\n Keywords\n - molecular interaction data\n - protein-protein interaction\n - IntAct\n - cross-reference\n\n Pipeline Steps\n - Step-1: The script loads the UniProtKB canonical accessions that are cross-referenced to IntAct database accessions/identifiers from the triplestore containing triples from nt file and extracts the data as a csv dataset\n\nExecution Domain\n Scripts - https://github.com/GW-HIVE/glygen-backend-integration/blob/master/pipeline/integrator/make-protein-dataset.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: uniprot-proteome-homo-sapiens.nt\n URI: https://data.glygen.org/ln2data/releases/data/v-1.8.25/source/uniprot-proteome-homo-sapiens.nt\n Name: human_protein_masterlist.csv\n URI: https://data.glygen.org/ln2data/releases/data/v-1.8.25/reviewed/human_protein_masterlist.csv\n Output Subdomain\n Name: human_protein_xref_intact.csv\n URI: http://data.glygen.org/ln2data/releases/data/v-1.8.25/reviewed/human_protein_xref_intact.csv\n Name: human_protein_xref_intact.stat.csv\n URI: http://data.glygen.org/ln2data/releases/data/v-1.8.25/reviewed/human_protein_xref_intact.stat.csv\n\nFields\n Name: \"src_xref_key\"\n Description: \"Source Xref key\"\n Unique Values: \"1\"\n Name: \"xref_id\"\n Description: \"ID of the X-ref\"\n Unique Values: \"119\"\n Name: \"title\"\n Description: \"Title of the published article in the journal\"\n Unique Values: \"119\"\n Name: \"src_xref_id\"\n Description: \"Source X-ref ID\"\n Unique Values: \"120\"\n Name: \"journal_name\"\n Description: \"The name of the journal in which the article is published\"\n Unique Values: \"49\"\n Name: \"authors\"\n Description: \"NA\"\n Unique Values: \"118\"\n Name: \"publication_date\"\n Description: \"Contains the full date on which the issue of the journal was published. Sourced from MEDLINE/PubMed data element(fields) description.\"\n Unique Values: \"117\"\n Name: \"glytoucan_ac\"\n Description: \"Unique accession assigned to the registered glycan structure in GlyTouCan database\"\n Unique Values: \"115\"\n Name: \"xref_key\"\n Description: \"Source key associated to the xref_id\"\n Unique Values: \"1\"", "downloadurl": "/ln2data/releases/data/v-1.8.25/reviewed/human_protein_xref_intact.csv" }