{ "bcoid": "GLY_000090", "title": "Human UniProtKB Xref Bgee", "description": "The Human UniProtKB Xref Bgee dataset contains human [taxid:9606] UniProtKB canonical accessions cross-referenced ...", "filename": "human_protein_xref_bgee.csv", "filetype": "csv", "categories": { "species": "Homo sapiens", "molecule": "Protein", "tags": "Bgee", "file_type": "csv", "status": "Reviewed", "scope": "internal" }, "minitable": { "content": [ [ "Q8TBF5-1...", "protein_xref..." ], [ "Q8TBF4-1...", "protein_xref..." ] ], "headers": [ "uniprotkb_ca...", "xref_key..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "uniprotkb_canonical_ac" }, { "type": "string", "label": "xref_key" }, { "type": "string", "label": "xref_id" }, { "type": "string", "label": "xref_label" } ], [ "Q8TBF5-1", "protein_xref_bgee", "ENSG00000163964", "Expressed in caudate nucleus and 210 other tissues" ], [ "Q8TBF4-1", "protein_xref_bgee", "ENSG00000139168", "Expressed in oocyte and 221 other tissues" ], [ "Q9NRJ4-1", "protein_xref_bgee", "ENSG00000130338", "Expressed in corpus callosum and 235 other tissues" ], [ "Q9NQ79-1", "protein_xref_bgee", "ENSG00000095713", "Expressed in tendon and 190 other tissues" ], [ "Q9NVL8-1", "protein_xref_bgee", "ENSG00000100557", "Expressed in kidney and 104 other tissues" ], [ "Q9NRQ5-1", "protein_xref_bgee", "ENSG00000166002", "Expressed in parotid gland and 221 other tissues" ], [ "Q8IZF5-1", "protein_xref_bgee", "ENSG00000173567", "Expressed in left adrenal gland and 112 other tissues" ], [ "P30613-1", "protein_xref_bgee", "ENSG00000143627", "Expressed in liver and 138 other tissues" ], [ "Q5H9L4-1", "protein_xref_bgee", "ENSG00000102387", "Expressed in right testis and 85 other tissues" ], [ "Q9BZL4-1", "protein_xref_bgee", "ENSG00000125503", "Expressed in lower esophagus muscularis layer and 213 other tissues" ], [ "Q9NVL1-1", "protein_xref_bgee", "ENSG00000158483", "Expressed in muscle tissue and 119 other tissues" ], [ "Q5QJ38-1", "protein_xref_bgee", "ENSG00000182898", "Expressed in skin of abdomen and 2 other tissues" ], [ "Q9NQ75-1", "protein_xref_bgee", "ENSG00000087589", "Expressed in blood and 114 other tissues" ], [ "P20930-1", "protein_xref_bgee", "ENSG00000143631", "Expressed in mammalian vulva and 126 other tissues" ], [ "P20933-1", "protein_xref_bgee", "ENSG00000038002", "Expressed in testis and 234 other tissues" ], [ "P20936-1", "protein_xref_bgee", "ENSG00000145715", "Expressed in placenta and 244 other tissues" ], [ "Q8NFX7-1", "protein_xref_bgee", "ENSG00000168952", "Expressed in lateral nuclear group of thalamus and 205 other tissues" ], [ "Q9UM21-1", "protein_xref_bgee", "ENSG00000071073", "Expressed in colon and 218 other tissues" ], [ "Q496A3-1", "protein_xref_bgee", "ENSG00000249481", "Expressed in testis and 44 other tissues" ], [ "P83859-1", "protein_xref_bgee", "ENSG00000188710", "Expressed in sural nerve and 94 other tissues" ], [ "P40617-1", "protein_xref_bgee", "ENSG00000122644", "Expressed in right testis and 120 other tissues" ], [ "Q70EL4-1", "protein_xref_bgee", "ENSG00000154914", "Expressed in amniotic fluid and 187 other tissues" ], [ "Q8TBF2-1", "protein_xref_bgee", "ENSG00000157870", "Expressed in substantia nigra and 200 other tissues" ], [ "Q15573-1", "protein_xref_bgee", "ENSG00000143498", "Expressed in oocyte and 182 other tissues" ], [ "Q15572-1", "protein_xref_bgee", "ENSG00000103168", "Expressed in left lobe of thyroid gland and 208 other tissues" ], [ "Q9BQP9-1", "protein_xref_bgee", "ENSG00000131059", "Expressed in sperm and 40 other tissues" ], [ "Q9H999-1", "protein_xref_bgee", "ENSG00000120137", "Expressed in jejunal mucosa and 242 other tissues" ], [ "P23919-1", "protein_xref_bgee", "ENSG00000168393", "Expressed in ventricular zone and 191 other tissues" ], [ "Q8NHX4-1", "protein_xref_bgee", "ENSG00000173699", "Expressed in testis and 92 other tissues" ], [ "Q8NHX9-1", "protein_xref_bgee", "ENSG00000162341", "Expressed in amniotic fluid and 197 other tissues" ], [ "A8MU46-1", "protein_xref_bgee", "ENSG00000214872", "Expressed in quadriceps femoris and 124 other tissues" ], [ "Q6ZNW5-1", "protein_xref_bgee", "ENSG00000183208", "Expressed in heart left ventricle and 138 other tissues" ], [ "Q9NXR8-1", "protein_xref_bgee", "ENSG00000071243", "Expressed in secondary oocyte and 242 other tissues" ], [ "Q9C0H2-1", "protein_xref_bgee", "ENSG00000136295", "Expressed in ventricular zone and 181 other tissues" ], [ "Q9C0H5-1", "protein_xref_bgee", "ENSG00000147799", "Expressed in sural nerve and 162 other tissues" ], [ "Q4VXU2-1", "protein_xref_bgee", "ENSG00000101104", "Expressed in right lobe of thyroid gland and 177 other tissues" ], [ "Q9C0H6-1", "protein_xref_bgee", "ENSG00000102271", "Expressed in corpus callosum and 129 other tissues" ], [ "Q9C0H9-5", "protein_xref_bgee", "ENSG00000277363", "Expressed in cerebellar vermis and 151 other tissues" ], [ "Q9NXR1-2", "protein_xref_bgee", "ENSG00000072864", "Expressed in adrenal gland and 223 other tissues" ], [ "Q00537-1", "protein_xref_bgee", "ENSG00000059758", "Expressed in corpus callosum and 239 other tissues" ], [ "Q00536-1", "protein_xref_bgee", "ENSG00000102225", "Expressed in right hemisphere of cerebellum and 233 other tissues" ], [ "Q9NXR5-1", "protein_xref_bgee", "ENSG00000088448", "Expressed in intestine and 239 other tissues" ], [ "Q00532-1", "protein_xref_bgee", "ENSG00000100490", "Expressed in endocervix and 152 other tissues" ], [ "Q96J66-1", "protein_xref_bgee", "ENSG00000121270", "Expressed in sural nerve and 88 other tissues" ], [ "O00244-1", "protein_xref_bgee", "ENSG00000177556", "Expressed in adult mammalian kidney and 239 other tissues" ], [ "Q9UBM8-1", "protein_xref_bgee", "ENSG00000182050", "Expressed in heart and 122 other tissues" ], [ "Q9H2V7-1", "protein_xref_bgee", "ENSG00000169682", "Expressed in granulocyte and 115 other tissues" ], [ "O00241-1", "protein_xref_bgee", "ENSG00000101307", "Expressed in blood and 136 other tissues" ], [ "O00716-1", "protein_xref_bgee", "ENSG00000112242", "Expressed in buccal mucosa cell and 229 other tissues" ], [ "Q8IX01-1", "protein_xref_bgee", "ENSG00000064607", "Expressed in right testis and 245 other tissues" ], [ "Q3LI54-1", "protein_xref_bgee", "ENSG00000206102", "Expressed in adenohypophysis and 48 other tissues" ], [ "Q9UBM1-1", "protein_xref_bgee", "ENSG00000133027", "Expressed in corpus epididymis and 203 other tissues" ], [ "A8MTA8-1", "protein_xref_bgee", "ENSG00000215187", "Expressed in right adrenal gland and 127 other tissues" ], [ "Q9UBM4-1", "protein_xref_bgee", "ENSG00000188770", "Expressed in placenta and 75 other tissues" ], [ "P24522-1", "protein_xref_bgee", "ENSG00000116717", "Expressed in quadriceps femoris and 241 other tissues" ], [ "Q13835-1", "protein_xref_bgee", "ENSG00000081277", "Expressed in skin of leg and 134 other tissues" ], [ "Q7Z3T1-1", "protein_xref_bgee", "ENSG00000238243", "Expressed in blood and 100 other tissues" ], [ "A0AVF1-1", "protein_xref_bgee", "ENSG00000105948", "Expressed in bronchial epithelial cell and 150 other tissues" ], [ "P40424-1", "protein_xref_bgee", "ENSG00000185630", "Expressed in endocervix and 248 other tissues" ], [ "P40425-1", "protein_xref_bgee", "ENSG00000204304", "Expressed in left lobe of thyroid gland and 232 other tissues" ], [ "P40426-1", "protein_xref_bgee", "ENSG00000167081", "Expressed in intestine and 224 other tissues" ], [ "Q8IZK6-1", "protein_xref_bgee", "ENSG00000153898", "Expressed in tibia and 149 other tissues" ], [ "P40429-1", "protein_xref_bgee", "ENSG00000142541", "Expressed in left ovary and 112 other tissues" ], [ "P51991-1", "protein_xref_bgee", "ENSG00000170144", "Expressed in testis and 251 other tissues" ], [ "Q13838-1", "protein_xref_bgee", "ENSG00000198563", "Expressed in left lobe of thyroid gland and 115 other tissues" ], [ "O00337-1", "protein_xref_bgee", "ENSG00000156222", "Expressed in right lobe of liver and 91 other tissues" ], [ "Q8TDW7-3", "protein_xref_bgee", "ENSG00000165323", "Expressed in primary visual cortex and 169 other tissues" ], [ "Q5M775-1", "protein_xref_bgee", "ENSG00000128487", "Expressed in corpus callosum and 171 other tissues" ], [ "Q8WTV0-1", "protein_xref_bgee", "ENSG00000073060", "Expressed in adrenal gland and 205 other tissues" ], [ "Q9H2I8-1", "protein_xref_bgee", "ENSG00000148655", "Expressed in muscle tissue and 188 other tissues" ], [ "A0A075B6S2-1", "protein_xref_bgee", "ENSG00000243264", "Expressed in lymph node and 98 other tissues" ], [ "P08842-1", "protein_xref_bgee", "ENSG00000101846", "Expressed in chorionic villus and 221 other tissues" ], [ "P03891-1", "protein_xref_bgee", "ENSG00000198763", "Expressed in left adrenal gland and 113 other tissues" ], [ "Q5VUR7-1", "protein_xref_bgee", "ENSG00000276203", "Expressed in testis and 105 other tissues" ], [ "P48960-1", "protein_xref_bgee", "ENSG00000123146", "Expressed in blood and 190 other tissues" ], [ "P03897-1", "protein_xref_bgee", "ENSG00000198840", "Expressed in muscle layer of sigmoid colon and 117 other tissues" ], [ "P02768-1", "protein_xref_bgee", "ENSG00000163631", "Expressed in right lobe of liver and 132 other tissues" ], [ "A0A075B7E8-1", "protein_xref_bgee", "ENSG00000271178", "Expressed in lymph node and 80 other tissues" ], [ "P20645-1", "protein_xref_bgee", "ENSG00000003056", "Expressed in small intestine Peyer's patch and 245 other tissues" ], [ "P05386-1", "protein_xref_bgee", "ENSG00000137818", "Expressed in uterus and 134 other tissues" ], [ "P05387-1", "protein_xref_bgee", "ENSG00000177600", "Expressed in adipose tissue of abdominal region and 251 other tissues" ], [ "P24863-1", "protein_xref_bgee", "ENSG00000112237", "Expressed in nasal cavity mucosa and 248 other tissues" ], [ "P08559-1", "protein_xref_bgee", "ENSG00000131828", "Expressed in heart left ventricle and 246 other tissues" ], [ "P02760-1", "protein_xref_bgee", "ENSG00000106927", "Expressed in liver and 112 other tissues" ] ] }, "readme": "Name\n - Human UniProtKB Xref Bgee\n\nVersion\n - 1.8.25\n\nCreated on\n - 2019-01-23T17:21:05.959744\n\nModified on\n - 2020-04-10T11:31:45.477452\n\nCreated by\n - Jeet Vora [jeetvora@gwu.edu], Rahi Navelkar [rsn13@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Xavier Holmes [xavierh@email.gwu.edu]\n\nAuthors\n - Maria Martin [martin@ebi.ac.uk], Preethi Vasudev [pvasudev@ebi.ac.uk]\n\nChecksum\n - \n\nUsability Domain\n - The Human UniProtKB Xref Bgee dataset contains human [taxid:9606] UniProtKB canonical accessions cross-referenced to Bgee database accessions/identifiers. The dataset is derived from 2019-09 UniProtKB release. If you use this dataset please provide proper attribution to EMBL-EBI-UniProtKB and GlyGen. \n - Bgee is a database to retrieve and compare gene expression patterns in multiple animal species, produced from multiple data types (RNA-Seq, Affymetrix, in situ hybridization, and EST data) and from multiple data sets.\n\nDescription Domain\n Keywords\n - gene expression\n - Bgee\n - cross-reference\n\n Pipeline Steps\n - Step-1: The script loads the UniProtKB canonical accessions that are cross-referenced to Bgee database accessions/identifiers from the triplestore containing triples from nt file and extracts the data as a csv dataset\n\nExecution Domain\n Scripts - https://github.com/GW-HIVE/glygen-backend-integration/blob/master/pipeline/integrator/make-protein-dataset.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: uniprot-proteome-homo-sapiens.nt\n URI: https://data.glygen.org/ln2data/releases/data/v-1.8.25/source/uniprot-proteome-homo-sapiens.nt\n Name: human_protein_masterlist.csv\n URI: https://data.glygen.org/ln2data/releases/data/v-1.8.25/reviewed/human_protein_masterlist.csv\n Output Subdomain\n Name: human_protein_xref_bgee.csv\n URI: http://data.glygen.org/ln2data/releases/data/v-1.8.25/reviewed/human_protein_xref_bgee.csv\n Name: human_protein_xref_bgee.stat.csv\n URI: http://data.glygen.org/ln2data/releases/data/v-1.8.25/reviewed/human_protein_xref_bgee.stat.csv\n\nFields\n Name: \"src_xref_key\"\n Description: \"Source Xref key\"\n Unique Values: \"1\"\n Name: \"xref_id\"\n Description: \"ID of the X-ref\"\n Unique Values: \"119\"\n Name: \"title\"\n Description: \"Title of the published article in the journal\"\n Unique Values: \"119\"\n Name: \"src_xref_id\"\n Description: \"Source X-ref ID\"\n Unique Values: \"120\"\n Name: \"journal_name\"\n Description: \"The name of the journal in which the article is published\"\n Unique Values: \"49\"\n Name: \"authors\"\n Description: \"NA\"\n Unique Values: \"118\"\n Name: \"publication_date\"\n Description: \"Contains the full date on which the issue of the journal was published. Sourced from MEDLINE/PubMed data element(fields) description.\"\n Unique Values: \"117\"\n Name: \"glytoucan_ac\"\n Description: \"Unique accession assigned to the registered glycan structure in GlyTouCan database\"\n Unique Values: \"115\"\n Name: \"xref_key\"\n Description: \"Source key associated to the xref_id\"\n Unique Values: \"1\"", "downloadurl": "/ln2data/releases/data/v-1.8.25/reviewed/human_protein_xref_bgee.csv" }