{ "bcoid": "GLY_000087", "title": "Human Protein Recommended Names (UniProtKB)", "description": "The Human Protein Recommended Names (UniProtKB) dataset contains UniProtKB recommended names for human ...", "filename": "human_protein_recnames.csv", "filetype": "csv", "categories": { "species": "Homo sapiens", "molecule": "Protein", "tags": "Protein Recommended Names", "file_type": "csv", "status": "Reviewed", "scope": "internal" }, "minitable": { "content": [ [ "Q8TBF5-1...", "Phosphatidyl..." ], [ "Q8TBF4-1...", "Zinc finger ..." ] ], "headers": [ "uniprotkb_ca...", "recommended_..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "uniprotkb_canonical_ac" }, { "type": "string", "label": "recommended_name_full" }, { "type": "string", "label": "recommended_name_short" }, { "type": "string", "label": "ec_name" } ], [ "Q8TBF5-1", "Phosphatidylinositol-glycan biosynthesis class X protein", "PIG-X", "" ], [ "Q8TBF4-1", "Zinc finger CCHC-type and RNA-binding motif-containing protein 1", "", "" ], [ "Q9NRJ4-1", "Tubby-related protein 4", "", "" ], [ "Q9NQ79-1", "Cartilage acidic protein 1", "", "" ], [ "Q9NVL8-1", "Uncharacterized protein CCDC198", "", "" ], [ "Q9NRQ5-1", "Single-pass membrane and coiled-coil domain-containing protein 4", "", "" ], [ "Q8IZF5-1", "Adhesion G-protein coupled receptor F3", "", "" ], [ "P30613-1", "Pyruvate kinase PKLR", "", "2.7.1.40" ], [ "Q5H9L4-1", "Transcription initiation factor TFIID subunit 7-like", "", "" ], [ "Q9BZL4-1", "Protein phosphatase 1 regulatory subunit 12C", "", "" ], [ "Q9NVL1-1", "Putative protein FAM86C1P", "", "2.1.1.-" ], [ "Q5QJ38-1", "Trichohyalin-like protein 1", "", "" ], [ "Q9NQ75-1", "Cas scaffolding protein family member 4", "", "" ], [ "P20930-1", "Filaggrin", "", "" ], [ "P20933-1", "N(4)-(beta-N-acetylglucosaminyl)-L-asparaginase", "", "3.5.1.26" ], [ "P20933-1", "Glycosylasparaginase alpha chain", "", "" ], [ "P20933-1", "Glycosylasparaginase beta chain", "", "" ], [ "P20936-1", "Ras GTPase-activating protein 1", "RasGAP", "" ], [ "P20936-1", "Ras GTPase-activating protein 1", "GAP", "" ], [ "P20936-1", "Ras GTPase-activating protein 1", "GTPase-activating protein", "" ], [ "A0A1W2PQ27-1", "RNA polymerase II subunit A C-terminal domain phosphatase SSU72", "", "3.1.3.16" ], [ "Q8NFX7-1", "Syntaxin-binding protein 6", "", "" ], [ "Q9UM21-1", "Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase A", "", "2.4.1.145" ], [ "Q9UM21-1", "Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase A soluble form", "", "" ], [ "Q496A3-1", "Spermatogenesis-associated serine-rich protein 1", "", "" ], [ "P83859-1", "QRF-amide", "", "" ], [ "P83859-1", "Orexigenic neuropeptide QRFP", "", "" ], [ "P40617-1", "ADP-ribosylation factor-like protein 4A", "", "" ], [ "Q70EL4-1", "Ubiquitin carboxyl-terminal hydrolase 43", "", "3.4.19.12" ], [ "Q8TBF2-1", "Prostamide/prostaglandin F synthase", "Prostamide/PG F synthase", "1.11.1.20" ], [ "Q8TBF2-1", "Prostamide/prostaglandin F synthase", "Prostamide/PGF synthase", "1.11.1.20" ], [ "Q15573-1", "TATA box-binding protein-associated factor RNA polymerase I subunit A", "", "" ], [ "Q15572-1", "TATA box-binding protein-associated factor RNA polymerase I subunit C", "", "" ], [ "Q9BQP9-1", "BPI fold-containing family A member 3", "", "" ], [ "Q9H999-1", "Pantothenate kinase 3", "hPanK3", "2.7.1.33" ], [ "P23919-1", "Thymidylate kinase", "", "2.7.4.9" ], [ "Q8NHX4-1", "Spermatogenesis-associated protein 3", "", "" ], [ "Q8NHX9-1", "Two pore calcium channel protein 2", "", "" ], [ "A8MU46-1", "Smoothelin-like protein 1", "", "" ], [ "Q6ZNW5-1", "GDP-D-glucose phosphorylase 1", "", "2.7.7.78" ], [ "Q9NXR8-1", "Inhibitor of growth protein 3", "", "" ], [ "Q9C0H2-1", "Protein tweety homolog 3", "hTTY3", "" ], [ "Q9C0H5-1", "Rho GTPase-activating protein 39", "", "" ], [ "Q4VXU2-1", "Polyadenylate-binding protein 1-like", "", "" ], [ "Q9C0H6-1", "Kelch-like protein 4", "", "" ], [ "Q9C0H9-5", "SRC kinase signaling inhibitor 1", "", "" ], [ "Q9NXR1-2", "Nuclear distribution protein nudE homolog 1", "NudE", "" ], [ "Q00537-1", "Cyclin-dependent kinase 17", "", "2.7.11.22" ], [ "Q00536-1", "Cyclin-dependent kinase 16", "", "2.7.11.22" ], [ "Q9NXR5-1", "Ankyrin repeat domain-containing protein 10", "", "" ], [ "Q00532-1", "Cyclin-dependent kinase-like 1", "", "2.7.11.22" ], [ "Q96J66-1", "ATP-binding cassette sub-family C member 11", "", "" ], [ "O00244-1", "Copper transport protein ATOX1", "", "" ], [ "Q9UBM8-1", "Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase C", "", "2.4.1.145" ], [ "Q9H2V7-1", "Protein spinster homolog 1", "", "" ], [ "O00241-1", "Signal-regulatory protein beta-1", "SIRP-beta-1", "" ], [ "O00716-1", "Transcription factor E2F3", "E2F-3", "" ], [ "Q8IX01-1", "SURP and G-patch domain-containing protein 2", "", "" ], [ "Q3LI54-1", "Keratin-associated protein 19-8", "", "" ], [ "Q9UBM1-1", "Phosphatidylethanolamine N-methyltransferase", "PEAMT", "2.1.1.17" ], [ "Q9UBM1-1", "Phosphatidylethanolamine N-methyltransferase", "PEMT", "2.1.1.17" ], [ "Q9UBM1-1", "Phosphatidylethanolamine N-methyltransferase", "PEAMT", "2.1.1.71" ], [ "Q9UBM1-1", "Phosphatidylethanolamine N-methyltransferase", "PEMT", "2.1.1.71" ], [ "A8MTA8-1", "Protein FAM166B", "", "" ], [ "Q9UBM4-1", "Opticin", "", "" ], [ "P24522-1", "Growth arrest and DNA damage-inducible protein GADD45 alpha", "", "" ], [ "Q13835-1", "Plakophilin-1", "", "" ], [ "Q7Z3T1-1", "Olfactory receptor 2W3", "", "" ], [ "A0AVF1-1", "Intraflagellar transport protein 56", "", "" ], [ "P40424-1", "Pre-B-cell leukemia transcription factor 1", "", "" ], [ "P40425-1", "Pre-B-cell leukemia transcription factor 2", "", "" ], [ "P40426-1", "Pre-B-cell leukemia transcription factor 3", "", "" ], [ "Q8IZK6-1", "Mucolipin-2", "", "" ], [ "P40429-1", "60S ribosomal protein L13a", "", "" ], [ "P51991-1", "Heterogeneous nuclear ribonucleoprotein A3", "hnRNP A3", "" ], [ "Q13838-1", "Spliceosome RNA helicase DDX39B", "", "3.6.4.13" ], [ "O00337-1", "Sodium/nucleoside cotransporter 1", "", "" ], [ "Q8TDW7-3", "Protocadherin Fat 3", "hFat3", "" ], [ "Q5M775-1", "Cytospin-B", "", "" ], [ "Q8WTV0-1", "Scavenger receptor class B member 1", "SRB1", "" ], [ "Q9H2I8-1", "Leucine-rich melanocyte differentiation-associated protein", "", "" ], [ "A0A075B6S2-1", "Immunoglobulin kappa variable 2D-29", "", "" ], [ "P08842-1", "Steryl-sulfatase", "", "3.1.6.2" ], [ "P03891-1", "NADH-ubiquinone oxidoreductase chain 2", "", "7.1.1.2" ] ] }, "readme": "Name\n - Human Protein Recommended Names (UniProtKB)\n\nVersion\n - 1.8.25\n\nCreated on\n - 2019-01-23T17:21:05.956673\n\nModified on\n - 2020-04-10T11:30:02.137726\n\nCreated by\n - Jeet Vora [jeetvora@gwu.edu], Rahi Navelkar [rsn13@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Xavier Holmes [xavierh@email.gwu.edu]\n\nAuthors\n - Maria Martin [martin@ebi.ac.uk], Preethi Vasudev [pvasudev@ebi.ac.uk]\n\nChecksum\n - \n\nUsability Domain\n - The Human Protein Recommended Names (UniProtKB) dataset contains UniProtKB recommended names for human [taxid:9606] proteins. The dataset is derived from 2019-09 UniProtKB release. If you use this dataset please provide proper attribution to EMBL-EBI-UniProtKB and GlyGen\n\nDescription Domain\n Keywords\n - protein recommended name\n - protein name\n - UniProtKB\n\n Pipeline Steps\n - Step-1: The script loads the UniProtKB recommended names for protein accessions from the triplestore containing triples from nt file and extracts the recommended names into csv dataset file\n\nExecution Domain\n Scripts - https://github.com/glygener/glygen-backend-integration/blob/master/pipeline/extractor/extract-from-endpoint.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: uniprot-proteome-homo-sapiens.nt\n URI: https://data.glygen.org/ln2data/releases/data/v-1.8.25/source/uniprot-proteome-homo-sapiens.nt\n Name: human_protein_masterlist.csv\n URI: https://data.glygen.org/ln2data/releases/data/v-1.8.25/reviewed/human_protein_masterlist.csv\n Output Subdomain\n Name: human_protein_recnames.csv\n URI: http://data.glygen.org/ln2data/releases/data/v-1.8.25/reviewed/human_protein_recnames.csv\n Name: human_protein_recnames.stat.csv\n URI: http://data.glygen.org/ln2data/releases/data/v-1.8.25/reviewed/human_protein_recnames.stat.csv\n\nFields\n Name: \"src_xref_key\"\n Description: \"Source Xref key\"\n Unique Values: \"1\"\n Name: \"xref_id\"\n Description: \"ID of the X-ref\"\n Unique Values: \"119\"\n Name: \"title\"\n Description: \"Title of the published article in the journal\"\n Unique Values: \"119\"\n Name: \"src_xref_id\"\n Description: \"Source X-ref ID\"\n Unique Values: \"120\"\n Name: \"journal_name\"\n Description: \"The name of the journal in which the article is published\"\n Unique Values: \"49\"\n Name: \"authors\"\n Description: \"NA\"\n Unique Values: \"118\"\n Name: \"publication_date\"\n Description: \"Contains the full date on which the issue of the journal was published. Sourced from MEDLINE/PubMed data element(fields) description.\"\n Unique Values: \"117\"\n Name: \"glytoucan_ac\"\n Description: \"Unique accession assigned to the registered glycan structure in GlyTouCan database\"\n Unique Values: \"115\"\n Name: \"xref_key\"\n Description: \"Source key associated to the xref_id\"\n Unique Values: \"1\"", "downloadurl": "/ln2data/releases/data/v-1.8.25/reviewed/human_protein_recnames.csv" }