{ "bcoid": "GLY_000034", "title": "Mouse Protein Information (UniProtKB)", "description": "The Mouse Protein Information dataset contains mouse [taxid:10090] UniProtKB canonical accessions with ...", "filename": "mouse_protein_info_uniprotkb.csv", "filetype": "csv", "categories": { "species": "Mus musculus", "molecule": "Protein", "tags": "Protein Information", "file_type": "csv", "status": "Reviewed", "scope": "internal" }, "minitable": { "content": [ [ "Q8BH24-1...", "TM9S4_MOUSE..." ], [ "Q8BH27-1...", "MEGF9_MOUSE..." ] ], "headers": [ "uniprotkb_ca...", "uniprotkb_id..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "uniprotkb_canonical_ac" }, { "type": "string", "label": "uniprotkb_id" }, { "type": "string", "label": "uniprotkb_protein_mass" }, { "type": "string", "label": "uniprotkb_protein_length" } ], [ "Q8BH24-1", "TM9S4_MOUSE", "74693", "643" ], [ "Q8BH27-1", "MEGF9_MOUSE", "62831", "600" ], [ "Q8BH26-1", "TM251_MOUSE", "18720", "163" ], [ "Q8VF69-1", "Q8VF69_MOUSE", "35557", "319" ], [ "Q9JHR7-1", "IDE_MOUSE", "117772", "1019" ], [ "Q8VF63-1", "Q8VF63_MOUSE", "35508", "314" ], [ "Q8VF62-1", "Q8VF62_MOUSE", "34571", "311" ], [ "Q8VF66-1", "OL469_MOUSE", "34839", "314" ], [ "Q8VF65-1", "OL470_MOUSE", "34840", "314" ], [ "Q8VF64-1", "Q8VF64_MOUSE", "34590", "309" ], [ "B2RXV4-1", "FLVC1_MOUSE", "60469", "560" ], [ "E9Q3P4-1", "E9Q3P4_MOUSE", "342472", "2997" ], [ "A0A087WRQ3-1", "A0A087WRQ3_MOUSE", "12084", "109" ], [ "Q9CXG9-1", "PHF19_MOUSE", "65236", "578" ], [ "Q07968-1", "F13B_MOUSE", "76195", "669" ], [ "A5H0M4-1", "A5H0M4_MOUSE", "53404", "473" ], [ "Q9CXG3-1", "PPIL4_MOUSE", "57230", "492" ], [ "B1AQ89-1", "B1AQ89_MOUSE", "18414", "175" ], [ "A0A1B0GST9-1", "CTXD1_MOUSE", "6734", "59" ], [ "B1AQ87-1", "B1AQ87_MOUSE", "5201", "50" ], [ "B1AQ85-1", "B1AQ85_MOUSE", "17538", "167" ], [ "A0A1B0GST0-1", "A0A1B0GST0_MOUSE", "35814", "319" ], [ "P01942-1", "HBA_MOUSE", "15085", "142" ], [ "P03899-1", "NU3M_MOUSE", "13219", "115" ], [ "O35153-1", "BET1L_MOUSE", "12428", "111" ], [ "P03893-1", "NU2M_MOUSE", "38752", "345" ], [ "Q9QYH9-1", "TNF14_MOUSE", "26338", "239" ], [ "P52479-1", "UBP10_MOUSE", "87022", "792" ], [ "A0A1Y7VJ58-1", "A0A1Y7VJ58_MOUSE", "10226", "118" ], [ "P02762-1", "MUP6_MOUSE", "20649", "180" ], [ "Q9QYH6-1", "MAGD1_MOUSE", "85670", "775" ], [ "Q3SXJ3-1", "Q3SXJ3_MOUSE", "35190", "310" ], [ "O08537-1", "ESR2_MOUSE", "59070", "530" ], [ "Q08AU9-1", "CQ058_MOUSE", "11284", "97" ], [ "Q08AU7-1", "MADL2_MOUSE", "33165", "307" ], [ "Q5EBH1-1", "RASF5_MOUSE", "46714", "413" ], [ "A0A087WSM5-1", "A0A087WSM5_MOUSE", "25896", "227" ], [ "Q61409-1", "PDE3B_MOUSE", "122154", "1100" ], [ "A2AVK5-1", "A2AVK5_MOUSE", "35352", "314" ], [ "Q80YU0-1", "ABHGB_MOUSE", "53297", "474" ], [ "Q61400-1", "CEAMA_MOUSE", "29474", "265" ], [ "Q61406-1", "Q61406_MOUSE", "38443", "343" ], [ "Q5SRT8-1", "CCNJL_MOUSE", "43530", "387" ], [ "P70414-1", "NAC1_MOUSE", "108035", "970" ], [ "P70412-1", "CUZD1_MOUSE", "68082", "606" ], [ "A0A140LIA7-1", "CT204_MOUSE", "20635", "188" ], [ "P70419-1", "GALT3_MOUSE", "72932", "633" ], [ "Q9EP78-1", "CHST7_MOUSE", "54767", "484" ], [ "Q9EP79-1", "V1R52_MOUSE", "35050", "309" ], [ "Q3URK3-1", "TET1_MOUSE", "219261", "2007" ], [ "Q9EP72-1", "EMC7_MOUSE", "26310", "241" ], [ "Q9EP73-1", "PD1L1_MOUSE", "32780", "290" ], [ "Q9EP71-1", "RAI14_MOUSE", "108852", "979" ], [ "Q9EP75-1", "CP4FE_MOUSE", "59800", "524" ], [ "Q3URK1-1", "CC190_MOUSE", "32592", "288" ], [ "S4R213-1", "S4R213_MOUSE", "63879", "581" ], [ "P53702-1", "CCHL_MOUSE", "30978", "272" ], [ "Q8R349-1", "CDC16_MOUSE", "71460", "620" ], [ "Q8R344-1", "CCD12_MOUSE", "18891", "166" ], [ "O08911-1", "MK12_MOUSE", "42043", "367" ], [ "Q80WC9-1", "ACSF4_MOUSE", "121569", "1100" ], [ "O08912-1", "GALT1_MOUSE", "64255", "559" ], [ "O08915-1", "AIP_MOUSE", "37605", "330" ], [ "O08914-1", "FAAH1_MOUSE", "63221", "579" ], [ "O08917-1", "FLOT1_MOUSE", "47513", "428" ], [ "Q80WC3-1", "TNC18_MOUSE", "307635", "2878" ], [ "O08918-1", "CCNG2_MOUSE", "38848", "344" ], [ "Q80WC1-1", "UBN2_MOUSE", "141740", "1314" ], [ "Q80WC7-1", "AGFG2_MOUSE", "48968", "479" ], [ "Q9JHY4-1", "WF15B_MOUSE", "9237", "80" ], [ "Q91ZK4-1", "DMBX1_MOUSE", "41115", "381" ], [ "Q91ZK0-1", "AP2D_MOUSE", "49548", "452" ], [ "Q9D4U7-1", "Q9D4U7_MOUSE", "15810", "146" ], [ "Q9D4U4-1", "Q9D4U4_MOUSE", "14337", "128" ], [ "A0A3Q4EGJ1-1", "A0A3Q4EGJ1_MOUSE", "119794", "1067" ], [ "P19070-1", "CR2_MOUSE", "112995", "1025" ], [ "Q8BZM0-1", "KLH12_MOUSE", "63246", "568" ], [ "Q8BZM1-1", "GLMN_MOUSE", "67756", "596" ], [ "Q4VC33-1", "MAEA_MOUSE", "45336", "396" ], [ "Q66GT5-1", "PTPM1_MOUSE", "21943", "193" ], [ "P50429-1", "ARSB_MOUSE", "59647", "534" ], [ "Q8BTJ4-1", "ENPP4_MOUSE", "51611", "456" ], [ "Q99LV7-1", "PIGX_MOUSE", "28644", "254" ], [ "Q4G5Y1-1", "KLDC2_MOUSE", "45909", "406" ] ] }, "readme": "Name\n - Mouse Protein Information (UniProtKB)\n\nVersion\n - 1.8.25\n\nCreated on\n - 2019-01-23T17:21:05.901631\n\nModified on\n - 2020-04-10T12:34:07.793851\n\nCreated by\n - Jeet Vora [jeetvora@gwu.edu], Rahi Navelkar [rsn13@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Xavier Holmes [xavierh@email.gwu.edu]\n\nAuthors\n - Maria Martin [martin@ebi.ac.uk], Preethi Vasudev [pvasudev@ebi.ac.uk]\n\nChecksum\n - \n\nUsability Domain\n - The Mouse Protein Information dataset contains mouse [taxid:10090] UniProtKB canonical accessions with their UniProtKB entry [id/mnemonic] name and properties such as mass and length. The dataset is derived from 2019_09 UniProtKB release. If you use this dataset please provide proper attribution to EMBL-EBI-UniProtKB and GlyGen\n\nDescription Domain\n Keywords\n - UniProtKB entry id\n - UniProtKB mnemonic name\n - protein length\n - protein mass\n\n Pipeline Steps\n - Step-1: The script loads the UniProtKB entry id/mnemonic name, protein mass and length for all canonical accessions from the triplestore containing triples from nt file and extracts it into a dataset as a csv format\n\nExecution Domain\n Scripts - https://github.com/GW-HIVE/glygen-backend-integration/blob/master/pipeline/integrator/make-protein-dataset.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: uniprot-proteome-mus-musculus.nt\n URI: https://data.glygen.org/ln2data/releases/data/v-1.8.25/source/uniprot-proteome-mus-musculus.nt\n Name: mouse_protein_masterlist.csv\n URI: https://data.glygen.org/ln2data/releases/data/v-1.8.25/reviewed/mouse_protein_masterlist.csv\n Output Subdomain\n Name: mouse_protein_info_uniprotkb.csv\n URI: http://data.glygen.org/ln2data/releases/data/v-1.8.25/reviewed/mouse_protein_info_uniprotkb.csv\n Name: mouse_protein_info_uniprotkb.stat.csv\n URI: http://data.glygen.org/ln2data/releases/data/v-1.8.25/reviewed/mouse_protein_info_uniprotkb.stat.csv\n\nFields\n Name: \"src_xref_key\"\n Description: \"Source Xref key\"\n Unique Values: \"1\"\n Name: \"xref_id\"\n Description: \"ID of the X-ref\"\n Unique Values: \"119\"\n Name: \"title\"\n Description: \"Title of the published article in the journal\"\n Unique Values: \"119\"\n Name: \"src_xref_id\"\n Description: \"Source X-ref ID\"\n Unique Values: \"120\"\n Name: \"journal_name\"\n Description: \"The name of the journal in which the article is published\"\n Unique Values: \"49\"\n Name: \"authors\"\n Description: \"NA\"\n Unique Values: \"118\"\n Name: \"publication_date\"\n Description: \"Contains the full date on which the issue of the journal was published. Sourced from MEDLINE/PubMed data element(fields) description.\"\n Unique Values: \"117\"\n Name: \"glytoucan_ac\"\n Description: \"Unique accession assigned to the registered glycan structure in GlyTouCan database\"\n Unique Values: \"115\"\n Name: \"xref_key\"\n Description: \"Source key associated to the xref_id\"\n Unique Values: \"1\"", "downloadurl": "/ln2data/releases/data/v-1.8.25/reviewed/mouse_protein_info_uniprotkb.csv" }