{ "bcoid": "GLY_000553", "title": "Human Xref The O-GlcNAc Database", "description": "Human Xref The O-GlcNAc Database contains human (taxid:9606) UniProtKB canonical accessions mapped to ...", "filename": "human_protein_xref_oglcnac_db.csv", "filetype": "csv", "categories": { "species": "Homo sapiens", "molecule": "Proteoform", "tags": "The O-GlcNAc Database", "file_type": "csv", "status": "Reviewed", "scope": "internal" }, "minitable": { "content": [ [ "Q9NRJ4-1...", "protein_xref..." ], [ "P30613-1...", "protein_xref..." ] ], "headers": [ "uniprotkb_ca...", "xref_key..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "uniprotkb_canonical_ac" }, { "type": "string", "label": "xref_key" }, { "type": "string", "label": "xref_id" }, { "type": "string", "label": "xref_label" } ], [ "Q9NRJ4-1", "protein_xref_oglcnac_db", "Q9NRJ4", "O-GlcNAc MCW" ], [ "P30613-1", "protein_xref_oglcnac_db", "P30613", "O-GlcNAc MCW" ], [ "Q9NQ75-1", "protein_xref_oglcnac_db", "Q9NQ75", "O-GlcNAc MCW" ], [ "P20930-1", "protein_xref_oglcnac_db", "P20930", "O-GlcNAc MCW" ], [ "Q8NFX7-1", "protein_xref_oglcnac_db", "Q8NFX7", "O-GlcNAc MCW" ], [ "P40617-1", "protein_xref_oglcnac_db", "P40617", "O-GlcNAc MCW" ], [ "Q15572-1", "protein_xref_oglcnac_db", "Q15572", "O-GlcNAc MCW" ], [ "P23919-1", "protein_xref_oglcnac_db", "P23919", "O-GlcNAc MCW" ], [ "Q9C0H9-5", "protein_xref_oglcnac_db", "Q9C0H9", "O-GlcNAc MCW" ], [ "Q9NXR1-2", "protein_xref_oglcnac_db", "Q9NXR1", "O-GlcNAc MCW" ], [ "Q00536-1", "protein_xref_oglcnac_db", "Q00536", "O-GlcNAc MCW" ], [ "Q00532-1", "protein_xref_oglcnac_db", "Q00532", "O-GlcNAc MCW" ], [ "O00244-1", "protein_xref_oglcnac_db", "O00244", "O-GlcNAc MCW" ], [ "Q9H2V7-1", "protein_xref_oglcnac_db", "Q9H2V7", "O-GlcNAc MCW" ], [ "Q8IX01-1", "protein_xref_oglcnac_db", "Q8IX01", "O-GlcNAc MCW" ], [ "Q8IX01-1", "protein_xref_oglcnac_db", "Q8IX01", "O-GlcNAc MCW" ], [ "Q8IX01-1", "protein_xref_oglcnac_db", "Q8IX01", "O-GlcNAc MCW" ], [ "Q13835-1", "protein_xref_oglcnac_db", "Q13835", "O-GlcNAc MCW" ], [ "P40425-1", "protein_xref_oglcnac_db", "P40425", "O-GlcNAc MCW" ], [ "P40429-1", "protein_xref_oglcnac_db", "P40429", "O-GlcNAc MCW" ], [ "P51991-1", "protein_xref_oglcnac_db", "P51991", "O-GlcNAc MCW" ], [ "P51991-1", "protein_xref_oglcnac_db", "P51991", "O-GlcNAc MCW" ], [ "P51991-1", "protein_xref_oglcnac_db", "P51991", "O-GlcNAc MCW" ], [ "Q13838-1", "protein_xref_oglcnac_db", "Q13838", "O-GlcNAc MCW" ], [ "Q5M775-1", "protein_xref_oglcnac_db", "Q5M775", "O-GlcNAc MCW" ], [ "P48960-1", "protein_xref_oglcnac_db", "P48960", "O-GlcNAc MCW" ], [ "P03897-1", "protein_xref_oglcnac_db", "P03897", "O-GlcNAc MCW" ], [ "P02768-1", "protein_xref_oglcnac_db", "P02768", "O-GlcNAc MCW" ], [ "P20645-1", "protein_xref_oglcnac_db", "P20645", "O-GlcNAc MCW" ], [ "P05386-1", "protein_xref_oglcnac_db", "P05386", "O-GlcNAc MCW" ], [ "P05387-1", "protein_xref_oglcnac_db", "P05387", "O-GlcNAc MCW" ], [ "P05387-1", "protein_xref_oglcnac_db", "P05387", "O-GlcNAc MCW" ], [ "P08559-1", "protein_xref_oglcnac_db", "P08559", "O-GlcNAc MCW" ], [ "P02765-1", "protein_xref_oglcnac_db", "P02765", "O-GlcNAc MCW" ], [ "Q15165-2", "protein_xref_oglcnac_db", "Q15165", "O-GlcNAc MCW" ], [ "P35579-1", "protein_xref_oglcnac_db", "P35579", "O-GlcNAc MCW" ], [ "P35579-1", "protein_xref_oglcnac_db", "P35579", "O-GlcNAc MCW" ], [ "P35579-1", "protein_xref_oglcnac_db", "P35579", "O-GlcNAc MCW" ], [ "P35579-1", "protein_xref_oglcnac_db", "P35579", "O-GlcNAc MCW" ], [ "P35579-1", "protein_xref_oglcnac_db", "P35579", "O-GlcNAc MCW" ], [ "P35579-1", "protein_xref_oglcnac_db", "P35579", "O-GlcNAc MCW" ], [ "Q8N1G0-1", "protein_xref_oglcnac_db", "Q8N1G0", "O-GlcNAc MCW" ], [ "Q8N1G0-1", "protein_xref_oglcnac_db", "Q8N1G0", "O-GlcNAc MCW" ], [ "O15258-1", "protein_xref_oglcnac_db", "O15258", "O-GlcNAc MCW" ], [ "P29401-1", "protein_xref_oglcnac_db", "P29401", "O-GlcNAc MCW" ], [ "Q9H0S4-1", "protein_xref_oglcnac_db", "Q9H0S4", "O-GlcNAc MCW" ], [ "P07900-1", "protein_xref_oglcnac_db", "P07900", "O-GlcNAc MCW" ], [ "O14776-1", "protein_xref_oglcnac_db", "O14776", "O-GlcNAc MCW" ], [ "Q5T5X7-1", "protein_xref_oglcnac_db", "Q5T5X7", "O-GlcNAc MCW" ], [ "Q9H9Z2-1", "protein_xref_oglcnac_db", "Q9H9Z2", "O-GlcNAc MCW" ], [ "Q96CS3-1", "protein_xref_oglcnac_db", "Q96CS3", "O-GlcNAc MCW" ], [ "Q9P219-1", "protein_xref_oglcnac_db", "Q9P219", "O-GlcNAc MCW" ], [ "Q9P219-1", "protein_xref_oglcnac_db", "Q9P219", "O-GlcNAc MCW" ], [ "Q9P218-1", "protein_xref_oglcnac_db", "Q9P218", "O-GlcNAc MCW" ], [ "Q9P218-1", "protein_xref_oglcnac_db", "Q9P218", "O-GlcNAc MCW" ], [ "Q9P212-1", "protein_xref_oglcnac_db", "Q9P212", "O-GlcNAc MCW" ], [ "Q9Y6E2-1", "protein_xref_oglcnac_db", "Q9Y6E2", "O-GlcNAc MCW" ], [ "Q9Y6E0-1", "protein_xref_oglcnac_db", "Q9Y6E0", "O-GlcNAc MCW" ], [ "Q9BVC6-1", "protein_xref_oglcnac_db", "Q9BVC6", "O-GlcNAc MCW" ], [ "P16402-1", "protein_xref_oglcnac_db", "P16402", "O-GlcNAc MCW" ], [ "Q6NX49-1", "protein_xref_oglcnac_db", "Q6NX49", "O-GlcNAc MCW" ], [ "P09001-1", "protein_xref_oglcnac_db", "P09001", "O-GlcNAc MCW" ], [ "P53708-1", "protein_xref_oglcnac_db", "P53708", "O-GlcNAc MCW" ], [ "P53708-1", "protein_xref_oglcnac_db", "P53708", "O-GlcNAc MCW" ], [ "P53708-1", "protein_xref_oglcnac_db", "P53708", "O-GlcNAc MCW" ], [ "P53708-1", "protein_xref_oglcnac_db", "P53708", "O-GlcNAc MCW" ], [ "Q9UKZ1-1", "protein_xref_oglcnac_db", "Q9UKZ1", "O-GlcNAc MCW" ], [ "Q9UKZ1-1", "protein_xref_oglcnac_db", "Q9UKZ1", "O-GlcNAc MCW" ], [ "Q14568-1", "protein_xref_oglcnac_db", "Q14568", "O-GlcNAc MCW" ], [ "Q14563-1", "protein_xref_oglcnac_db", "Q14563", "O-GlcNAc MCW" ], [ "Q8WYB5-1", "protein_xref_oglcnac_db", "Q8WYB5", "O-GlcNAc MCW" ], [ "Q14566-1", "protein_xref_oglcnac_db", "Q14566", "O-GlcNAc MCW" ], [ "O60741-1", "protein_xref_oglcnac_db", "O60741", "O-GlcNAc MCW" ], [ "O60741-1", "protein_xref_oglcnac_db", "O60741", "O-GlcNAc MCW" ], [ "O60741-1", "protein_xref_oglcnac_db", "O60741", "O-GlcNAc MCW" ], [ "Q9NRH1-1", "protein_xref_oglcnac_db", "Q9NRH1", "O-GlcNAc MCW" ], [ "P41219-1", "protein_xref_oglcnac_db", "P41219", "O-GlcNAc MCW" ], [ "Q86VP1-1", "protein_xref_oglcnac_db", "Q86VP1", "O-GlcNAc MCW" ], [ "Q92522-1", "protein_xref_oglcnac_db", "Q92522", "O-GlcNAc MCW" ], [ "Q92597-1", "protein_xref_oglcnac_db", "Q92597", "O-GlcNAc MCW" ], [ "Q7L8L6-1", "protein_xref_oglcnac_db", "Q7L8L6", "O-GlcNAc MCW" ], [ "Q8N5F7-1", "protein_xref_oglcnac_db", "Q8N5F7", "O-GlcNAc MCW" ], [ "Q96MC4-1", "protein_xref_oglcnac_db", "Q96MC4", "O-GlcNAc MCW" ], [ "Q5TG92-1", "protein_xref_oglcnac_db", "Q5TG92", "O-GlcNAc MCW" ] ] }, "readme": "Name\n - Human Xref The O-GlcNAc Database\n\nVersion\n - 1.8.24\n\nCreated on\n - 2021-02-22T19:23:09.094102\n\nModified on\n - 2021-03-02T16:04:56.979980\n\nCreated by\n - [jeetvora@gwu.edu], Rahi Navelkar [rsn13@gwu.edu], Robel Kahsay [rykahsay@gwu.edu]\n\nAuthors\n - Stephanie Olivier-Van Stichelen [solivier@mcw.edu], Eugenia Wulff-Fuentes [ewulff@mcw.edu], Rex R. Berendt [rberendt@mcw.edu], Logan Massman [lmassman@mcw.edu], Laura Danner [ldanner@mcw.edu]\n\nChecksum\n - \n\nUsability Domain\n - Human Xref The O-GlcNAc Database contains human (taxid:9606) UniProtKB canonical accessions mapped to the The O-GlcNAc Database accessions.\n\nDescription Domain\n Keywords\n - O-GlcNAc\n\n Pipeline Steps\n - Step-1: The script maps the UniProtKB accesions to the The O-GlcNAc Database accessions.\n\nExecution Domain\n Scripts - https://github.com/glygener/glygen-backend-integration/blob/master/pipeline/integrator/make-proteoform-dataset.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: human_protein_masterlist.csv\n URI: https://data.glygen.org/ln2data/releases/data/v-1.8.24/reviewed/human_protein_masterlist.csv\n Name: human_proteoform_glycosylation_sites_o_glcnac_mcw.csv\n URI: https://data.glygen.org/ln2data/releases/data/v-1.8.24/reviewed/human_proteoform_glycosylation_sites_o_glcnac_mcw.csv\n Output Subdomain\n Name: human_protein_xref_oglcnac_db.csv\n URI: https://data.glygen.org/ln2data/releases/data/v-1.8.24/reviewed/human_protein_xref_oglcnac_db.csv\n Name: human_protein_xref_oglcnac_db.stat.csv\n URI: https://data.glygen.org/ln2data/releases/data/v-1.8.24/reviewed/human_protein_xref_oglcnac_db.stat.csv\n\nFields\n Name: \"src_xref_key\"\n Description: \"Source Xref key\"\n Unique Values: \"1\"\n Name: \"xref_id\"\n Description: \"ID of the X-ref\"\n Unique Values: \"119\"\n Name: \"title\"\n Description: \"Title of the published article in the journal\"\n Unique Values: \"119\"\n Name: \"src_xref_id\"\n Description: \"Source X-ref ID\"\n Unique Values: \"120\"\n Name: \"journal_name\"\n Description: \"The name of the journal in which the article is published\"\n Unique Values: \"49\"\n Name: \"authors\"\n Description: \"NA\"\n Unique Values: \"118\"\n Name: \"publication_date\"\n Description: \"Contains the full date on which the issue of the journal was published. Sourced from MEDLINE/PubMed data element(fields) description.\"\n Unique Values: \"117\"\n Name: \"glytoucan_ac\"\n Description: \"Unique accession assigned to the registered glycan structure in GlyTouCan database\"\n Unique Values: \"115\"\n Name: \"xref_key\"\n Description: \"Source key associated to the xref_id\"\n Unique Values: \"1\"", "downloadurl": "/ln2data/releases/data/v-1.8.24/reviewed/human_protein_xref_oglcnac_db.csv" }