{ "bcoid": "GLY_000527", "title": "Sandbox accessions (GlyTouCan Accession)", "description": "The dataset includes GlyTouCan accessions included in Sandbox application.", "filename": "glycan_xref_sandbox.csv", "filetype": "csv", "categories": { "molecule": "Glycan", "tags": "Sanbox Glycan accessions", "file_type": "csv", "status": "Reviewed", "scope": "internal" }, "minitable": { "content": [ [ "G00012RZ...", "G00012RZ..." ], [ "G00025YC...", "G00025YC..." ] ], "headers": [ "glytoucan_ac...", "xref_id..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "glytoucan_ac" }, { "type": "string", "label": "xref_id" }, { "type": "string", "label": "xref_key" } ], [ "G00012RZ", "G00012RZ", "glycan_xref_sandbox" ], [ "G00025YC", "G00025YC", "glycan_xref_sandbox" ], [ "G00026MO", "G00026MO", "glycan_xref_sandbox" ], [ "G00028MO", "G00028MO", "glycan_xref_sandbox" ], [ "G00029MO", "G00029MO", "glycan_xref_sandbox" ], [ "G00030MO", "G00030MO", "glycan_xref_sandbox" ], [ "G00155YT", "G00155YT", "glycan_xref_sandbox" ], [ "G00171RJ", "G00171RJ", "glycan_xref_sandbox" ], [ "G00176HZ", "G00176HZ", "glycan_xref_sandbox" ], [ "G00186OS", "G00186OS", "glycan_xref_sandbox" ], [ "G00221CZ", "G00221CZ", "glycan_xref_sandbox" ], [ "G00230CO", "G00230CO", "glycan_xref_sandbox" ], [ "G00231WL", "G00231WL", "glycan_xref_sandbox" ], [ "G00247JV", "G00247JV", "glycan_xref_sandbox" ], [ "G00247PL", "G00247PL", "glycan_xref_sandbox" ], [ "G00249IY", "G00249IY", "glycan_xref_sandbox" ], [ "G00279YF", "G00279YF", "glycan_xref_sandbox" ], [ "G00318AV", "G00318AV", "glycan_xref_sandbox" ], [ "G00320ZP", "G00320ZP", "glycan_xref_sandbox" ], [ "G00325UK", "G00325UK", "glycan_xref_sandbox" ], [ "G00328CG", "G00328CG", "glycan_xref_sandbox" ], [ "G00335DM", "G00335DM", "glycan_xref_sandbox" ], [ "G00349CA", "G00349CA", "glycan_xref_sandbox" ], [ "G00361YF", "G00361YF", "glycan_xref_sandbox" ], [ "G00383KP", "G00383KP", "glycan_xref_sandbox" ], [ "G00383YF", "G00383YF", "glycan_xref_sandbox" ], [ "G00396IE", "G00396IE", "glycan_xref_sandbox" ], [ "G00412SV", "G00412SV", "glycan_xref_sandbox" ], [ "G00413UF", "G00413UF", "glycan_xref_sandbox" ], [ "G00432WV", "G00432WV", "glycan_xref_sandbox" ], [ "G00433KW", "G00433KW", "glycan_xref_sandbox" ], [ "G00438EF", "G00438EF", "glycan_xref_sandbox" ], [ "G00451UT", "G00451UT", "glycan_xref_sandbox" ], [ "G00463XD", "G00463XD", "glycan_xref_sandbox" ], [ "G00468KU", "G00468KU", "glycan_xref_sandbox" ], [ "G00470UO", "G00470UO", "glycan_xref_sandbox" ], [ "G00480KJ", "G00480KJ", "glycan_xref_sandbox" ], [ "G00487XO", "G00487XO", "glycan_xref_sandbox" ], [ "G00492CQ", "G00492CQ", "glycan_xref_sandbox" ], [ "G00503EE", "G00503EE", "glycan_xref_sandbox" ], [ "G00504PK", "G00504PK", "glycan_xref_sandbox" ], [ "G00514XC", "G00514XC", "glycan_xref_sandbox" ], [ "G00523YW", "G00523YW", "glycan_xref_sandbox" ], [ "G00531ZU", "G00531ZU", "glycan_xref_sandbox" ], [ "G00536FZ", "G00536FZ", "glycan_xref_sandbox" ], [ "G00545NQ", "G00545NQ", "glycan_xref_sandbox" ], [ "G00553AN", "G00553AN", "glycan_xref_sandbox" ], [ "G00565QJ", "G00565QJ", "glycan_xref_sandbox" ], [ "G00582VL", "G00582VL", "glycan_xref_sandbox" ], [ "G00588HO", "G00588HO", "glycan_xref_sandbox" ], [ "G00591PZ", "G00591PZ", "glycan_xref_sandbox" ], [ "G00594AV", "G00594AV", "glycan_xref_sandbox" ], [ "G00598SQ", "G00598SQ", "glycan_xref_sandbox" ], [ "G00606LX", "G00606LX", "glycan_xref_sandbox" ], [ "G00629YK", "G00629YK", "glycan_xref_sandbox" ], [ "G00662IB", "G00662IB", "glycan_xref_sandbox" ], [ "G00662UH", "G00662UH", "glycan_xref_sandbox" ], [ "G00666EC", "G00666EC", "glycan_xref_sandbox" ], [ "G00670OT", "G00670OT", "glycan_xref_sandbox" ], [ "G00691NS", "G00691NS", "glycan_xref_sandbox" ], [ "G00695JO", "G00695JO", "glycan_xref_sandbox" ], [ "G00706QN", "G00706QN", "glycan_xref_sandbox" ], [ "G00709CF", "G00709CF", "glycan_xref_sandbox" ], [ "G00738BQ", "G00738BQ", "glycan_xref_sandbox" ], [ "G00741NZ", "G00741NZ", "glycan_xref_sandbox" ], [ "G00743WU", "G00743WU", "glycan_xref_sandbox" ], [ "G00797ZX", "G00797ZX", "glycan_xref_sandbox" ], [ "G00798PL", "G00798PL", "glycan_xref_sandbox" ], [ "G00805TZ", "G00805TZ", "glycan_xref_sandbox" ], [ "G00826SV", "G00826SV", "glycan_xref_sandbox" ], [ "G00830CM", "G00830CM", "glycan_xref_sandbox" ], [ "G00842OY", "G00842OY", "glycan_xref_sandbox" ], [ "G00850LT", "G00850LT", "glycan_xref_sandbox" ], [ "G00864TV", "G00864TV", "glycan_xref_sandbox" ], [ "G00868ZN", "G00868ZN", "glycan_xref_sandbox" ], [ "G00876GU", "G00876GU", "glycan_xref_sandbox" ], [ "G00883DO", "G00883DO", "glycan_xref_sandbox" ], [ "G00883ZT", "G00883ZT", "glycan_xref_sandbox" ], [ "G00900AZ", "G00900AZ", "glycan_xref_sandbox" ], [ "G00909GK", "G00909GK", "glycan_xref_sandbox" ], [ "G00909PI", "G00909PI", "glycan_xref_sandbox" ], [ "G00923KH", "G00923KH", "glycan_xref_sandbox" ], [ "G00951UF", "G00951UF", "glycan_xref_sandbox" ], [ "G00955WX", "G00955WX", "glycan_xref_sandbox" ] ] }, "readme": "Name\n - Sandbox accessions (GlyTouCan Accession)\n\nVersion\n - 1.8.24\n\nCreated on\n - 2020-09-10T15:28:11.224030\n\nModified on\n - 2021-03-17T15:26:28.168734\n\nCreated by\n - Rahi Navelkar [rsn13@gwu.edu], Jeet Vora [jeetvora@gwu.edu], Robel Kahsay [rykahsay@gwu.edu]\n\nAuthors\n - \n\nChecksum\n - \n\nUsability Domain\n - The dataset includes GlyTouCan accessions included in Sandbox application.\n\nDescription Domain\n Keywords\n - GlyTouCan accessions\n - Glycans\n - Sandbox\n\n Pipeline Steps\n - Step-1: The dataset was directly downloaded from the provider and a script was used to check if the GlyTouCan Ac is included in the glycan masterlist (https://data.glygen.org/GLY_000281)\n\nExecution Domain\n Scripts - https://github.com/GW-HIVE/glygen-backend-integration/blob/master/pipeline/integrator/\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: sandbox_accessions.csv\n URI: https://data.glygen.org/ln2data/releases/data/v-1.8.24/source/sandbox_accessions.csv\n Output Subdomain\n Name: glycan_xref_sandbox.csv\n URI: http://data.glygen.org/ln2data/releases/data/v-1.8.24/reviewed/glycan_xref_sandbox.csv\n Name: glycan_xref_sandbox.stat.csv\n URI: http://data.glygen.org/ln2data/releases/data/v-1.8.24/reviewed/glycan_xref_sandbox.stat.csv\n\nFields\n Name: \"src_xref_key\"\n Description: \"Source Xref key\"\n Unique Values: \"1\"\n Name: \"xref_id\"\n Description: \"ID of the X-ref\"\n Unique Values: \"119\"\n Name: \"title\"\n Description: \"Title of the published article in the journal\"\n Unique Values: \"119\"\n Name: \"src_xref_id\"\n Description: \"Source X-ref ID\"\n Unique Values: \"120\"\n Name: \"journal_name\"\n Description: \"The name of the journal in which the article is published\"\n Unique Values: \"49\"\n Name: \"authors\"\n Description: \"NA\"\n Unique Values: \"118\"\n Name: \"publication_date\"\n Description: \"Contains the full date on which the issue of the journal was published. Sourced from MEDLINE/PubMed data element(fields) description.\"\n Unique Values: \"117\"\n Name: \"glytoucan_ac\"\n Description: \"Unique accession assigned to the registered glycan structure in GlyTouCan database\"\n Unique Values: \"115\"\n Name: \"xref_key\"\n Description: \"Source key associated to the xref_id\"\n Unique Values: \"1\"", "downloadurl": "/ln2data/releases/data/v-1.8.24/reviewed/glycan_xref_sandbox.csv" }