{ "bcoid": "GLY_000516", "title": "Human Proteoform Citations (Literature Mining)", "description": "The dataset provides citation details corresponding to the PubMed ID (PMID) from file https://data.glygen.org/GLYDS000481. ...", "filename": "human_proteoform_citations_literature_mining.csv", "filetype": "csv", "categories": { "species": "Homo sapiens", "molecule": "Proteoform", "tags": "Protein Citations", "file_type": "csv", "status": "Reviewed", "scope": "internal" }, "minitable": { "content": [ [ "O15431-1...", "..." ], [ "O95255-1...", "..." ] ], "headers": [ "uniprotkb_ca...", "glytoucan_ac..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "uniprotkb_canonical_ac" }, { "type": "string", "label": "glytoucan_ac" }, { "type": "string", "label": "title" }, { "type": "string", "label": "journal_name" }, { "type": "string", "label": "publication_date" }, { "type": "string", "label": "authors" }, { "type": "string", "label": "xref_key" }, { "type": "string", "label": "xref_id" }, { "type": "string", "label": "src_xref_key" }, { "type": "string", "label": "src_xref_id" } ], [ "O15431-1", "", "O-linked glycosylation at threonine 27 protects the copper transporter hCTR1 from proteolytic cleavage in mammalian cells.", "The Journal of biological chemistry", "2007 Jul 13", "Maryon EB, Molloy SA, Kaplan JH", "protein_xref_automatic_literature_mining", "17525160", "protein_xref_automatic_literature_mining", "17525160" ], [ "O95255-1", "", "Subcellular localization and N-glycosylation of human ABCC6, expressed in MDCKII cells.", "Biochemical and biophysical research communications", "2003 Aug 22", "Sinko E, Ilias A, Ujhelly O, Homolya L, Scheffer GL, Bergen AA, Sarkadi B, Varadi A", "protein_xref_automatic_literature_mining", "12901863", "protein_xref_automatic_literature_mining", "12901863" ], [ "P00738-1", "", "Site-specific analysis of N-glycans on haptoglobin in sera of patients with pancreatic cancer: a novel approach for the development of tumor markers.", "International journal of cancer", "2008 May 15", "Nakano M, Nakagawa T, Ito T, Kitada T, Hijioka T, Kasahara A, Tajiri M, Wada Y, Taniguchi N, Miyoshi E", "protein_xref_automatic_literature_mining", "18214858", "protein_xref_automatic_literature_mining", "18214858" ], [ "P01009-1", "", "Comprehensive glyco-proteomic analysis of human alpha1-antitrypsin and its charge isoforms.", "Proteomics", "2006 Jun", "Kolarich D, Weber A, Turecek PL, Schwarz HP, Altmann F", "protein_xref_automatic_literature_mining", "16622833", "protein_xref_automatic_literature_mining", "16622833" ], [ "P01106-1", "", "Dynamic interplay between O-glycosylation and O-phosphorylation of nucleocytoplasmic proteins: alternative glycosylation/phosphorylation of THR-58, a known mutational hot spot of c-Myc in lymphomas, is regulated by mitogens.", "The Journal of biological chemistry", "2002 May 24", "Kamemura K, Hayes BK, Comer FI, Hart GW", "protein_xref_automatic_literature_mining", "11904304", "protein_xref_automatic_literature_mining", "11904304" ], [ "P01106-1", "", "c-Myc is glycosylated at threonine 58, a known phosphorylation site and a mutational hot spot in lymphomas.", "The Journal of biological chemistry", "1995 Aug 11", "Chou TY, Hart GW, Dang CV", "protein_xref_automatic_literature_mining", "7642555", "protein_xref_automatic_literature_mining", "7642555" ], [ "P02730-1", "", "Processing of N-linked oligosaccharide depends on its location in the anion exchanger, AE1, membrane glycoprotein.", "The Biochemical journal", "2000 Jul 1", "Li J, Quilty J, Popov M, Reithmeier RA", "protein_xref_automatic_literature_mining", "10861210", "protein_xref_automatic_literature_mining", "10861210" ], [ "P02786-1", "", "Structure of human transferrin receptor oligosaccharides: conservation of site-specific processing.", "Biochemistry", "1997 Apr 29", "Hayes GR, Williams AM, Lucas JJ, Enns CA", "protein_xref_automatic_literature_mining", "9136890", "protein_xref_automatic_literature_mining", "9136890" ], [ "P02786-1", "", "The critical glycosylation site of human transferrin receptor contains a high-mannose oligosaccharide.", "Glycobiology", "1995 Mar", "Hayes GR, Williams A, Costello CE, Enns CA, Lucas JJ", "protein_xref_automatic_literature_mining", "7780197", "protein_xref_automatic_literature_mining", "7780197" ], [ "P02786-1", "", "Identification of the O-linked glycosylation site of the human transferrin receptor.", "Glycobiology", "1992 Aug", "Hayes GR, Enns CA, Lucas JJ", "protein_xref_automatic_literature_mining", "1421757", "protein_xref_automatic_literature_mining", "1421757" ], [ "P02787-1", "", "Site-specific carbohydrate profiling of human transferrin by nano-flow liquid chromatography/electrospray ionization mass spectrometry.", "Rapid communications in mass spectrometry : RCM", "2004", "Satomi Y, Shimonishi Y, Hase T, Takao T", "protein_xref_automatic_literature_mining", "15536627", "protein_xref_automatic_literature_mining", "15536627" ], [ "P03956-1", "", "N-glycan structures of matrix metalloproteinase-1 derived from human fibroblasts and from HT-1080 fibrosarcoma cells.", "European journal of biochemistry", "1999 Feb", "Saarinen J, Welgus HG, Flizar CA, Kalkkinen N, Helin J", "protein_xref_automatic_literature_mining", "10092871", "protein_xref_automatic_literature_mining", "10092871" ], [ "P07288-1", "", "Glycoproteomics: identifying the glycosylation of prostate specific antigen at normal and high isoelectric points by LC-MS/MS.", "Journal of proteome research", "2014 Dec 5", "Song E, Mayampurath A, Yu CY, Tang H, Mechref Y", "protein_xref_automatic_literature_mining", "25327667", "protein_xref_automatic_literature_mining", "25327667" ], [ "P08473-1", "", "The human CD10 lacking an N-glycan at Asn(628) is deficient in surface expression and neutral endopeptidase activity.", "Biochimica et biophysica acta", "2012 Nov", "Sato B, Katagiri YU, Iijima K, Yamada H, Ito S, Kawasaki N, Okita H, Fujimoto J, Kiyokawa N", "protein_xref_automatic_literature_mining", "22766194", "protein_xref_automatic_literature_mining", "22766194" ], [ "P08842-1", "", "Cloning and expression of human steroid-sulfatase. Membrane topology, glycosylation, and subcellular distribution in BHK-21 cells.", "The Journal of biological chemistry", "1989 Aug 15", "Stein C, Hille A, Seidel J, Rijnbout S, Waheed A, Schmidt B, Geuze H, von Figura K", "protein_xref_automatic_literature_mining", "2668275", "protein_xref_automatic_literature_mining", "2668275" ], [ "P11279-1", "", "Assignment of O-glycan attachment sites to the hinge-like regions of human lysosomal membrane glycoproteins lamp-1 and lamp-2.", "Archives of biochemistry and biophysics", "1993 Jul", "Carlsson SR, Lycksell PO, Fukuda M", "protein_xref_automatic_literature_mining", "8323299", "protein_xref_automatic_literature_mining", "8323299" ], [ "P13497-1", "", "Post-translational modification of bone morphogenetic protein-1 is required for secretion and stability of the protein.", "The Journal of biological chemistry", "2002 Nov 8", "Garrigue-Antar L, Hartigan N, Kadler KE", "protein_xref_automatic_literature_mining", "12218058", "protein_xref_automatic_literature_mining", "12218058" ], [ "P15382-1", "", "O-glycosylation of the cardiac I(Ks) complex.", "The Journal of physiology", "2011 Aug 1", "Chandrasekhar KD, Lvov A, Terrenoire C, Gao GY, Kass RS, Kobertz WR", "protein_xref_automatic_literature_mining", "21669976", "protein_xref_automatic_literature_mining", "21669976" ], [ "P16422-1", "", "Glycosylation is crucial for stability of tumour and cancer stem cell antigen EpCAM.", "Frontiers in bioscience : a journal and virtual library", "2008 May 1", "Munz M, Fellinger K, Hofmann T, Schmitt B, Gires O", "protein_xref_automatic_literature_mining", "18508581", "protein_xref_automatic_literature_mining", "18508581" ], [ "P19634-1", "", "The Na+/H+ exchanger NHE-1 possesses N- and O-linked glycosylation restricted to the first N-terminal extracellular domain.", "Biochemistry", "1994 Aug 30", "Counillon L, Pouyssegur J, Reithmeier RA", "protein_xref_automatic_literature_mining", "8068684", "protein_xref_automatic_literature_mining", "8068684" ], [ "P20827-1", "", "Biological and structural characterization of glycosylation on ephrin-A1, a preferred ligand for EphA2 receptor tyrosine kinase.", "The Journal of biological chemistry", "2013 Jun 21", "Ferluga S, Hantgan R, Goldgur Y, Himanen JP, Nikolov DB, Debinski W", "protein_xref_automatic_literature_mining", "23661698", "protein_xref_automatic_literature_mining", "23661698" ], [ "P20916-1", "", "Identification of the glycosylated sequons of human myelin-associated glycoprotein.", "Biochemical and biophysical research communications", "1993 Dec 15", "Burger D, Pidoux L, Steck AJ", "protein_xref_automatic_literature_mining", "7505568", "protein_xref_automatic_literature_mining", "7505568" ], [ "P22760-1", "", "N-Glycosylation during translation is essential for human arylacetamide deacetylase enzyme activity.", "Biochemical pharmacology", "2014 Jan 15", "Muta K, Fukami T, Nakajima M, Yokoi T", "protein_xref_automatic_literature_mining", "24125761", "protein_xref_automatic_literature_mining", "24125761" ], [ "P25103-1", "", "Functional consequences of alteration of N-linked glycosylation sites on the neurokinin 1 receptor.", "Proceedings of the National Academy of Sciences of the United States of America", "2007 Jun 19", "Tansky MF, Pothoulakis C, Leeman SE", "protein_xref_automatic_literature_mining", "17563389", "protein_xref_automatic_literature_mining", "17563389" ], [ "P25116-1", "", "N-linked glycosylation regulates human proteinase-activated receptor-1 cell surface expression and disarming via neutrophil proteinases and thermolysin.", "The Journal of biological chemistry", "2011 Jul 1", "Xiao YP, Morice AH, Compton SJ, Sadofsky L", "protein_xref_automatic_literature_mining", "21550978", "protein_xref_automatic_literature_mining", "21550978" ], [ "P29965-1", "", "Determination of carbohydrate structures N-linked to soluble CD154 and characterization of the interactions of CD40 with CD154 expressed in Pichia pastoris and Chinese hamster ovary cells.", "Protein expression and purification", "2001 Nov", "Khandekar SS, Silverman C, Wells-Marani J, Bacon AM, Birrell H, Brigham-Burke M, DeMarini DJ, Jonak ZL, Camilleri P, Fishman-Lobell J", "protein_xref_automatic_literature_mining", "11676606", "protein_xref_automatic_literature_mining", "11676606" ], [ "P33527-1", "", "Membrane topology of the multidrug resistance protein (MRP). A study of glycosylation-site mutants reveals an extracytosolic NH2 terminus.", "The Journal of biological chemistry", "1997 Sep 19", "Hipfner DR, Almquist KC, Leslie EM, Gerlach JH, Grant CE, Deeley RG, Cole SP", "protein_xref_automatic_literature_mining", "9295302", "protein_xref_automatic_literature_mining", "9295302" ], [ "P34998-1", "", "N-glycosylation of CRF receptor type 1 is important for its ligand-specific interaction.", "American journal of physiology. Endocrinology and metabolism", "2001 Nov", "Assil IQ, Abou-Samra AB", "protein_xref_automatic_literature_mining", "11595658", "protein_xref_automatic_literature_mining", "11595658" ], [ "P35052-1", "", "The structural role of N-linked glycans on human glypican-1.", "Biochemistry", "2011 Nov 1", "Svensson G, Hyrenius Wittsten A, Linse S, Mani K", "protein_xref_automatic_literature_mining", "21932778", "protein_xref_automatic_literature_mining", "21932778" ], [ "P35354-1", "", "Characterization of the glycosylation sites in cyclooxygenase-2 using mass spectrometry.", "Biochemistry", "2001 Mar 13", "Nemeth JF, Hochgesang GP Jr, Marnett LJ, Caprioli RM", "protein_xref_automatic_literature_mining", "11258925", "protein_xref_automatic_literature_mining", "11258925" ], [ "P35475-1", "", "Human alpha-L-iduronidase uses its own N-glycan as a substrate-binding and catalytic module.", "Proceedings of the National Academy of Sciences of the United States of America", "2013 Sep 3", "Maita N, Tsukimura T, Taniguchi T, Saito S, Ohno K, Taniguchi H, Sakuraba H", "protein_xref_automatic_literature_mining", "23959878", "protein_xref_automatic_literature_mining", "23959878" ], [ "P35575-1", "", "Asparagine-linked oligosaccharides are localized to a luminal hydrophilic loop in human glucose-6-phosphatase.", "The Journal of biological chemistry", "1998 Aug 21", "Pan CJ, Lei KJ, Chou JY", "protein_xref_automatic_literature_mining", "9705299", "protein_xref_automatic_literature_mining", "9705299" ], [ "P40879-1", "", "Role of N-glycosylation in cell surface expression and protection against proteolysis of the intestinal anion exchanger SLC26A3.", "American journal of physiology. Cell physiology", "2012 Mar 1", "Hayashi H, Yamashita Y", "protein_xref_automatic_literature_mining", "22159084", "protein_xref_automatic_literature_mining", "22159084" ], [ "P41221-1", "", "Post-translational palmitoylation and glycosylation of Wnt-5a are necessary for its signalling.", "The Biochemical journal", "2007 Mar 15", "Kurayoshi M, Yamamoto H, Izumi S, Kikuchi A", "protein_xref_automatic_literature_mining", "17117926", "protein_xref_automatic_literature_mining", "17117926" ], [ "P48357-1", "", "Human leptin receptor. Determination of disulfide structure and N-glycosylation sites of the extracellular domain.", "The Journal of biological chemistry", "1998 Oct 30", "Haniu M, Arakawa T, Bures EJ, Young Y, Hui JO, Rohde MF, Welcher AA, Horan T", "protein_xref_automatic_literature_mining", "9786864", "protein_xref_automatic_literature_mining", "9786864" ], [ "P48549-1", "", "Glycosylation of GIRK1 at Asn119 and ROMK1 at Asn117 has different consequences in potassium channel function.", "The Journal of biological chemistry", "2000 Sep 29", "Pabon A, Chan KW, Sui JL, Wu X, Logothetis DE, Thornhill WB", "protein_xref_automatic_literature_mining", "10889209", "protein_xref_automatic_literature_mining", "10889209" ], [ "P51681-1", "", "Sialylated O-glycans and sulfated tyrosines in the NH2-terminal domain of CC chemokine receptor 5 contribute to high affinity binding of chemokines.", "The Journal of experimental medicine", "2001 Dec 3", "Bannert N, Craig S, Farzan M, Sogah D, Santo NV, Choe H, Sodroski J", "protein_xref_automatic_literature_mining", "11733580", "protein_xref_automatic_literature_mining", "11733580" ], [ "P51797-1", "", "Human ClC-6 is a late endosomal glycoprotein that associates with detergent-resistant lipid domains.", "PloS one", "2007 May 30", "Ignoul S, Simaels J, Hermans D, Annaert W, Eggermont J", "protein_xref_automatic_literature_mining", "17534424", "protein_xref_automatic_literature_mining", "17534424" ], [ "P55085-1", "", "Glycosylation of human proteinase-activated receptor-2 (hPAR2): role in cell surface expression and signalling.", "The Biochemical journal", "2002 Dec 1", "Compton SJ, Sandhu S, Wijesuriya SJ, Hollenberg MD", "protein_xref_automatic_literature_mining", "12171601", "protein_xref_automatic_literature_mining", "12171601" ], [ "Q02083-1", "", "Proteolytic activation and glycosylation of N-acylethanolamine-hydrolyzing acid amidase, a lysosomal enzyme involved in the endocannabinoid metabolism.", "Biochimica et biophysica acta", "2007 Nov", "Zhao LY, Tsuboi K, Okamoto Y, Nagahata S, Ueda N", "protein_xref_automatic_literature_mining", "17980170", "protein_xref_automatic_literature_mining", "17980170" ], [ "Q04206-1", "", "NFkappaB activation is associated with its O-GlcNAcylation state under hyperglycemic conditions.", "Proceedings of the National Academy of Sciences of the United States of America", "2008 Nov 11", "Yang WH, Park SY, Nam HW, Kim DH, Kang JG, Kang ES, Kim YS, Lee HC, Kim KS, Cho JW", "protein_xref_automatic_literature_mining", "18988733", "protein_xref_automatic_literature_mining", "18988733" ], [ "Q08345-1", "", "Glycosylation at Asn211 regulates the activation state of the discoidin domain receptor 1 (DDR1).", "The Journal of biological chemistry", "2014 Mar 28", "Fu HL, Valiathan RR, Payne L, Kumarasiri M, Mahasenan KV, Mobashery S, Huang P, Fridman R", "protein_xref_automatic_literature_mining", "24509848", "protein_xref_automatic_literature_mining", "24509848" ], [ "Q08357-1", "", "Transmembrane topology of PiT-2, a phosphate transporter-retrovirus receptor.", "Journal of virology", "2001 Jun", "Salaun C, Rodrigues P, Heard JM", "protein_xref_automatic_literature_mining", "11356966", "protein_xref_automatic_literature_mining", "11356966" ], [ "Q12809-1", "", "Role of glycosylation in cell surface expression and stability of HERG potassium channels.", "American journal of physiology. Heart and circulatory physiology", "2002 Jul", "Gong Q, Anderson CL, January CT, Zhou Z", "protein_xref_automatic_literature_mining", "12063277", "protein_xref_automatic_literature_mining", "12063277" ], [ "Q13087-1", "", "N-linked glycosylation modulates dimerization of protein disulfide isomerase family A member 2 (PDIA2).", "The FEBS journal", "2013 Jan", "Walker AK, Soo KY, Levina V, Talbo GH, Atkin JD", "protein_xref_automatic_literature_mining", "23167757", "protein_xref_automatic_literature_mining", "23167757" ], [ "Q13586-1", "", "Stromal interaction molecule 1 (STIM1), a transmembrane protein with growth suppressor activity, contains an extracellular SAM domain modified by N-linked glycosylation.", "Biochimica et biophysica acta", "2002 Apr 1", "Williams RT, Senior PV, Van Stekelenburg L, Layton JE, Smith PJ, Dziadek MA", "protein_xref_automatic_literature_mining", "11983428", "protein_xref_automatic_literature_mining", "11983428" ], [ "Q14542-1", "", "Functional analysis of site-directed glycosylation mutants of the human equilibrative nucleoside transporter-2.", "Archives of biochemistry and biophysics", "2003 Mar 1", "Ward JL, Leung GP, Toan SV, Tse CM", "protein_xref_automatic_literature_mining", "12590919", "protein_xref_automatic_literature_mining", "12590919" ], [ "Q14624-1", "", "Site-specific glycan microheterogeneity of inter-alpha-trypsin inhibitor heavy chain H4.", "Journal of proteome research", "2014 Jul 3", "Chandler KB, Brnakova Z, Sanda M, Wang S, Stalnaker SH, Bridger R, Zhao P, Wells L, Edwards NJ, Goldman R", "protein_xref_automatic_literature_mining", "24884609", "protein_xref_automatic_literature_mining", "24884609" ], [ "Q15043-1", "", "An iron-regulated and glycosylation-dependent proteasomal degradation pathway for the plasma membrane metal transporter ZIP14.", "Proceedings of the National Academy of Sciences of the United States of America", "2014 Jun 24", "Zhao N, Zhang AS, Worthen C, Knutson MD, Enns CA", "protein_xref_automatic_literature_mining", "24927598", "protein_xref_automatic_literature_mining", "24927598" ], [ "Q2MKA7-1", "", "N-Glycosylation of Human R-Spondin 1 Is Required for Efficient Secretion and Stability but Not for Its Heparin Binding Ability.", "International journal of molecular sciences", "2016 Jun 14", "Chang CF, Hsu LS, Weng CY, Chen CK, Wang SY, Chou YH, Liu YY, Yuan ZX, Huang WY, Lin H, Chen YH, Tsai JN", "protein_xref_automatic_literature_mining", "27314333", "protein_xref_automatic_literature_mining", "27314333" ], [ "Q496J9-1", "", "Only the complex N559-glycan in the synaptic vesicle glycoprotein 2C mediates high affinity binding to botulinum neurotoxin serotype A1.", "The Biochemical journal", "2016 Sep 1", "Mahrhold S, Bergstrom T, Stern D, Dorner BG, Astot C, Rummel A", "protein_xref_automatic_literature_mining", "27313224", "protein_xref_automatic_literature_mining", "27313224" ], [ "Q53GD3-1", "", "The human colonic thiamine pyrophosphate transporter (hTPPT) is a glycoprotein and N-linked glycosylation is important for its function.", "Biochimica et biophysica acta", "2016 Apr", "Nabokina SM, Subramanian VS, Said HM", "protein_xref_automatic_literature_mining", "26828122", "protein_xref_automatic_literature_mining", "26828122" ], [ "Q5VWK5-1", "", "Glycosylation analysis of interleukin-23 receptor: elucidation of glycosylation sites and characterization of attached glycan structures.", "Journal of mass spectrometry : JMS", "2010 Dec", "Zhao J, Liu YH, Reichert P, Pflanz S, Pramanik B", "protein_xref_automatic_literature_mining", "21053369", "protein_xref_automatic_literature_mining", "21053369" ], [ "Q6PIU2-1", "", "Targeting of neutral cholesterol ester hydrolase to the endoplasmic reticulum via its N-terminal sequence.", "Journal of lipid research", "2010 Feb", "Igarashi M, Osuga J, Isshiki M, Sekiya M, Okazaki H, Takase S, Takanashi M, Ohta K, Kumagai M, Nishi M, Fujita T, Nagai R, Kadowaki T, Ishibashi S", "protein_xref_automatic_literature_mining", "19592704", "protein_xref_automatic_literature_mining", "19592704" ], [ "Q8N6C8-1", "", "Glycosylation in a mammalian expression system is critical for the production of functionally active leukocyte immunoglobulin-like receptor A3 protein.", "The Journal of biological chemistry", "2013 Nov 15", "Lee TH, Mitchell A, Liu Lau S, An H, Rajeaskariah P, Wasinger V, Raftery M, Bryant K, Tedla N", "protein_xref_automatic_literature_mining", "24085305", "protein_xref_automatic_literature_mining", "24085305" ], [ "Q8TAV3-1", "", "Colorectal cancer-specific cytochrome P450 2W1: intracellular localization, glycosylation, and catalytic activity.", "Molecular pharmacology", "2010 Dec", "Gomez A, Nekvindova J, Travica S, Lee MY, Johansson I, Edler D, Mkrtchian S, Ingelman-Sundberg M", "protein_xref_automatic_literature_mining", "20805301", "protein_xref_automatic_literature_mining", "20805301" ], [ "Q969I6-1", "", "Membrane topological structure of neutral system N/A amino acid transporter 4 (SNAT4) protein.", "The Journal of biological chemistry", "2011 Nov 4", "Shi Q, Padmanabhan R, Villegas CJ, Gu S, Jiang JX", "protein_xref_automatic_literature_mining", "21917917", "protein_xref_automatic_literature_mining", "21917917" ], [ "Q96RD6-3", "", "N-Glycosylation Regulates Pannexin 2 Localization but Is Not Required for Interacting with Pannexin 1.", "International journal of molecular sciences", "2018 Jun 22", "Sanchez-Pupo RE, Johnston D, Penuela S", "protein_xref_automatic_literature_mining", "29932112", "protein_xref_automatic_literature_mining", "29932112" ], [ "Q99572-1", "", "Mutation of putative N-linked glycosylation sites on the human nucleotide receptor P2X7 reveals a key residue important for receptor function.", "Biochemistry", "2010 Jun 8", "Lenertz LY, Wang Z, Guadarrama A, Hill LM, Gavala ML, Bertics PJ", "protein_xref_automatic_literature_mining", "20450227", "protein_xref_automatic_literature_mining", "20450227" ], [ "Q9BSG0-1", "", "N-glycosylation is required for efficient secretion of a novel human secreted glycoprotein, hPAP21.", "FEBS letters", "2004 Oct 22", "Zhou YB, Liu F, Zhu ZD, Zhu H, Zhang X, Wang ZQ, Liu JH, Han ZG", "protein_xref_automatic_literature_mining", "15498570", "protein_xref_automatic_literature_mining", "15498570" ], [ "Q9BZJ8-1", "", "N-glycosylation and expression in human tissues of the orphan GPR61 receptor.", "FEBS open bio", "2017 Dec", "Kozielewicz P, Alomar H, Yusof S, Grafton G, Cooper AJ, Curnow SJ, Ironside JW, Pall H, Barnes NM", "protein_xref_automatic_literature_mining", "29226084", "protein_xref_automatic_literature_mining", "29226084" ], [ "Q9HCN6-1", "", "The influence of N-linked glycosylation on the function of platelet glycoprotein VI.", "Blood", "2005 Oct 15", "Kunicki TJ, Cheli Y, Moroi M, Furihata K", "protein_xref_automatic_literature_mining", "16014566", "protein_xref_automatic_literature_mining", "16014566" ], [ "Q9UHI7-1", "", "Topological studies of hSVCT1, the human sodium-dependent vitamin C transporter and the influence of N-glycosylation on its intracellular targeting.", "Experimental cell research", "2009 Aug 1", "Velho AM, Jarvis SM", "protein_xref_automatic_literature_mining", "19379732", "protein_xref_automatic_literature_mining", "19379732" ], [ "Q9ULZ9-1", "", "Expression and Characterization of Membrane-Type 4 Matrix Metalloproteinase (MT4-MMP) and its Different Forms in Melanoma.", "Cellular physiology and biochemistry : international journal of experimental cellular physiology, biochemistry, and pharmacology", "2017", "Hieronimus B, Pfohl J, Busch C, Graeve L", "protein_xref_automatic_literature_mining", "28531887", "protein_xref_automatic_literature_mining", "28531887" ], [ "Q9UNQ0-1", "", "N-Linked glycosylation of the human ABC transporter ABCG2 on asparagine 596 is not essential for expression, transport activity, or trafficking to the plasma membrane.", "Biochemistry", "2005 Apr 12", "Diop NK, Hrycyna CA", "protein_xref_automatic_literature_mining", "15807535", "protein_xref_automatic_literature_mining", "15807535" ], [ "Q9Y287-1", "", "Glycosylation of BRI2 on asparagine 170 is involved in its trafficking to the cell surface but not in its processing by furin or ADAM10.", "Glycobiology", "2011 Oct", "Tsachaki M, Serlidaki D, Fetani A, Zarkou V, Rozani I, Ghiso J, Efthimiopoulos S", "protein_xref_automatic_literature_mining", "21752865", "protein_xref_automatic_literature_mining", "21752865" ], [ "Q9Y4K0-1", "", "Post-translational modifications of recombinant human lysyl oxidase-like 2 (rhLOXL2) secreted from Drosophila S2 cells.", "The Journal of biological chemistry", "2013 Feb 22", "Xu L, Go EP, Finney J, Moon H, Lantz M, Rebecchi K, Desaire H, Mure M", "protein_xref_automatic_literature_mining", "23319596", "protein_xref_automatic_literature_mining", "23319596" ], [ "Q9Y5S8-1", "", "N-Linked glycosylation of the superoxide-producing NADPH oxidase Nox1.", "Biochemical and biophysical research communications", "2014 Jan 17", "Miyano K, Sumimoto H", "protein_xref_automatic_literature_mining", "24365146", "protein_xref_automatic_literature_mining", "24365146" ], [ "Q9Y6Y9-1", "", "N-linked glycosylations at Asn(26) and Asn(114) of human MD-2 are required for toll-like receptor 4-mediated activation of NF-kappaB by lipopolysaccharide.", "Journal of immunology (Baltimore, Md. : 1950)", "2001 Sep 15", "Ohnishi T, Muroi M, Tanamoto K", "protein_xref_automatic_literature_mining", "11544325", "protein_xref_automatic_literature_mining", "11544325" ] ] }, "readme": "Name\n - Human Proteoform Citations (Literature Mining)\n\nVersion\n - 1.8.24\n\nCreated on\n - 2020-06-26T15:29:27.375356\n\nModified on\n - 2020-06-26T15:51:32.207997\n\nCreated by\n - Rahi Navelkar [rsn13@gwu.edu], Jeet Vora [jeetvora@gwu.edu], Robel Kahsay [rykahsay@gwu.edu]\n\nAuthors\n - \n\nChecksum\n - \n\nUsability Domain\n - The dataset provides citation details corresponding to the PubMed ID (PMID) from file https://data.glygen.org/GLYDS000481. The script accesses the NCBI ENTREZ infrastructure to retrieve the publication information of the given PMID.\n\nDescription Domain\n Keywords\n - PMID\n - journal\n - citations\n - authors\n - Literature\n - PubMed\n\n Pipeline Steps\n - Step-1: The script parses the input file for PMIDs and accesses the NCBI Entrez infrastructure to download the publication information of the corresponding PMIDs.\n\nExecution Domain\n Scripts - https://github.com/GW-HIVE/glygen-backend-integration/blob/master/pipeline/integrator/make-proteoform-dataset.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: human_proteoform_glycosylation_sites_literature_mining.csv\n URI: https://data.glygen.org/ln2data/releases/data/v-1.8.24/reviewed/human_proteoform_glycosylation_sites_literature_mining.csv\n Output Subdomain\n Name: human_proteoform_citations_literature_mining.csv\n URI: http://data.glygen.org/ln2data/releases/data/v-1.8.24/reviewed/human_proteoform_citations_literature_mining.csv\n Name: human_proteoform_citations_literature_mining.stat.csv\n URI: http://data.glygen.org/ln2data/releases/data/v-1.8.24/reviewed/human_proteoform_citations_literature_mining.stat.csv\n\nFields\n Name: \"src_xref_key\"\n Description: \"Source Xref key\"\n Unique Values: \"1\"\n Name: \"xref_id\"\n Description: \"ID of the X-ref\"\n Unique Values: \"119\"\n Name: \"title\"\n Description: \"Title of the published article in the journal\"\n Unique Values: \"119\"\n Name: \"src_xref_id\"\n Description: \"Source X-ref ID\"\n Unique Values: \"120\"\n Name: \"journal_name\"\n Description: \"The name of the journal in which the article is published\"\n Unique Values: \"49\"\n Name: \"authors\"\n Description: \"NA\"\n Unique Values: \"118\"\n Name: \"publication_date\"\n Description: \"Contains the full date on which the issue of the journal was published. Sourced from MEDLINE/PubMed data element(fields) description.\"\n Unique Values: \"117\"\n Name: \"glytoucan_ac\"\n Description: \"Unique accession assigned to the registered glycan structure in GlyTouCan database\"\n Unique Values: \"115\"\n Name: \"xref_key\"\n Description: \"Source key associated to the xref_id\"\n Unique Values: \"1\"", "downloadurl": "/ln2data/releases/data/v-1.8.24/reviewed/human_proteoform_citations_literature_mining.csv" }