{ "bcoid": "GLY_000506", "title": "SARS-CoV2 Glycosylation Unique to Data sources", "description": "", "filename": "sarscov2_proteoform_glycosylation_unique_sources.csv", "filetype": "csv", "categories": { "species": "SARS coronavirus (SARS-CoV-2 or 2019-nCoV)", "molecule": "Proteoform", "tags": "Unique Glycosylation Sites", "file_type": "csv", "status": "Reviewed", "scope": "internal" }, "minitable": { "content": [ [ "P0DTC2-1...", "1074..." ], [ "P0DTC2-1...", "1074..." ] ], "headers": [ "uniprotkb_ca...", "glycosylatio..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "uniprotkb_canonical_ac" }, { "type": "string", "label": "glycosylation_site_uniprotkb" }, { "type": "string", "label": "saccharide" }, { "type": "string", "label": "glycosylation_type" }, { "type": "string", "label": "xref_key" }, { "type": "string", "label": "xref_id" }, { "type": "string", "label": "src_xref_key" }, { "type": "string", "label": "src_xref_id" }, { "type": "string", "label": "uniqueness_flag" }, { "type": "string", "label": "n_sequon" }, { "type": "string", "label": "n_sequon_type" } ], [ "P0DTC2-1", "1074", "G00194GV", "n-linked", "protein_xref_doi", "10.1101/2020.03.28.013276v2", "protein_xref_unicarbkb", "P0DTC2", "unique-site-with-glycan-to-unicarbkb", "NFT", "NXT" ], [ "P0DTC2-1", "1074", "G00194GV", "n-linked", "protein_xref_unicarbkb", "P0DTC2", "protein_xref_unicarbkb", "P0DTC2", "unique-site-with-glycan-to-unicarbkb", "NFT", "NXT" ], [ "P0DTC2-1", "1074", "G00406II", "n-linked", "protein_xref_glyconnect", "2839", "protein_xref_glyconnect", "2839", "unique-site-with-glycan-to-glyconnect", "NFT", "NXT" ], [ "P0DTC2-1", "1074", "G00406II", "n-linked", "protein_xref_pubmed", "32518941", "protein_xref_glyconnect", "2839", "unique-site-with-glycan-to-glyconnect", "NFT", "NXT" ], [ "P0DTC2-1", "1074", "G01650EU", "n-linked", "protein_xref_pubmed", "32366695", "protein_xref_unicarbkb", "P0DTC2", "unique-site-with-glycan-to-unicarbkb", "NFT", "NXT" ], [ "P0DTC2-1", "1074", "G01650EU", "n-linked", "protein_xref_unicarbkb", "P0DTC2", "protein_xref_unicarbkb", "P0DTC2", "unique-site-with-glycan-to-unicarbkb", "NFT", "NXT" ], [ "P0DTC2-1", "1074", "G02815KT", "n-linked", "protein_xref_doi", "10.1101/2020.03.28.013276v2", "protein_xref_unicarbkb", "P0DTC2", "unique-site-with-glycan-to-unicarbkb", "NFT", "NXT" ], [ "P0DTC2-1", "1074", "G02815KT", "n-linked", "protein_xref_pubmed", "32366695", "protein_xref_unicarbkb", "P0DTC2", "unique-site-with-glycan-to-unicarbkb", "NFT", "NXT" ], [ "P0DTC2-1", "1074", "G02815KT", "n-linked", "protein_xref_unicarbkb", "P0DTC2", "protein_xref_unicarbkb", "P0DTC2", "unique-site-with-glycan-to-unicarbkb", "NFT", "NXT" ], [ "P0DTC2-1", "1074", "G03382KH", "n-linked", "protein_xref_glyconnect", "2838", "protein_xref_glyconnect", "2838", "unique-site-with-glycan-to-glyconnect", "NFT", "NXT" ], [ "P0DTC2-1", "1074", "G03382KH", "n-linked", "protein_xref_glyconnect", "2840", "protein_xref_glyconnect", "2840", "unique-site-with-glycan-to-glyconnect", "NFT", "NXT" ], [ "P0DTC2-1", "1074", "G03382KH", "n-linked", "protein_xref_pubmed", "32363391", "protein_xref_glyconnect", "2838", "unique-site-with-glycan-to-glyconnect", "NFT", "NXT" ], [ "P0DTC2-1", "1074", "G03382KH", "n-linked", "protein_xref_pubmed", "32366695", "protein_xref_glyconnect", "2840", "unique-site-with-glycan-to-glyconnect", "NFT", "NXT" ], [ "P0DTC2-1", "1074", "G03574QJ", "n-linked", "protein_xref_pubmed", "32366695", "protein_xref_unicarbkb", "P0DTC2", "unique-site-with-glycan-to-unicarbkb", "NFT", "NXT" ], [ "P0DTC2-1", "1074", "G03574QJ", "n-linked", "protein_xref_unicarbkb", "P0DTC2", "protein_xref_unicarbkb", "P0DTC2", "unique-site-with-glycan-to-unicarbkb", "NFT", "NXT" ], [ "P0DTC2-1", "1074", "G05460KC", "n-linked", "protein_xref_doi", "10.1101/2020.03.28.013276v2", "protein_xref_unicarbkb", "P0DTC2", "unique-site-with-glycan-to-unicarbkb", "NFT", "NXT" ], [ "P0DTC2-1", "1074", "G05460KC", "n-linked", "protein_xref_unicarbkb", "P0DTC2", "protein_xref_unicarbkb", "P0DTC2", "unique-site-with-glycan-to-unicarbkb", "NFT", "NXT" ], [ "P0DTC2-1", "1074", "G05724UK", "n-linked", "protein_xref_glyconnect", "2839", "protein_xref_glyconnect", "2839", "unique-site-with-glycan-to-glyconnect", "NFT", "NXT" ], [ "P0DTC2-1", "1074", "G05724UK", "n-linked", "protein_xref_glyconnect", "2840", "protein_xref_glyconnect", "2840", "unique-site-with-glycan-to-glyconnect", "NFT", "NXT" ], [ "P0DTC2-1", "1074", "G05724UK", "n-linked", "protein_xref_pubmed", "32366695", "protein_xref_glyconnect", "2840", "unique-site-with-glycan-to-glyconnect", "NFT", "NXT" ], [ "P0DTC2-1", "1074", "G05724UK", "n-linked", "protein_xref_pubmed", "32518941", "protein_xref_glyconnect", "2839", "unique-site-with-glycan-to-glyconnect", "NFT", "NXT" ], [ "P0DTC2-1", "1074", "G06042JP", "n-linked", "protein_xref_doi", "10.1101/2020.03.28.013276v2", "protein_xref_unicarbkb", "P0DTC2", "unique-site-with-glycan-to-unicarbkb", "NFT", "NXT" ], [ "P0DTC2-1", "1074", "G06042JP", "n-linked", "protein_xref_pubmed", "32518941", "protein_xref_unicarbkb", "P0DTC2", "unique-site-with-glycan-to-unicarbkb", "NFT", "NXT" ], [ "P0DTC2-1", "1074", "G06042JP", "n-linked", "protein_xref_unicarbkb", "P0DTC2", "protein_xref_unicarbkb", "P0DTC2", "unique-site-with-glycan-to-unicarbkb", "NFT", "NXT" ], [ "P0DTC2-1", "1074", "G06110VR", "n-linked", "protein_xref_glyconnect", "2839", "protein_xref_glyconnect", "2839", "unique-site-with-glycan-to-glyconnect", "NFT", "NXT" ], [ "P0DTC2-1", "1074", "G06110VR", "n-linked", "protein_xref_glyconnect", "2840", "protein_xref_glyconnect", "2840", "unique-site-with-glycan-to-glyconnect", "NFT", "NXT" ], [ "P0DTC2-1", "1074", "G06110VR", "n-linked", "protein_xref_pubmed", "32366695", "protein_xref_glyconnect", "2840", "unique-site-with-glycan-to-glyconnect", "NFT", "NXT" ], [ "P0DTC2-1", "1074", "G06110VR", "n-linked", "protein_xref_pubmed", "32518941", "protein_xref_glyconnect", "2839", "unique-site-with-glycan-to-glyconnect", "NFT", "NXT" ], [ "P0DTC2-1", "1074", "G06356OH", "n-linked", "protein_xref_glyconnect", "2840", "protein_xref_glyconnect", "2840", "unique-site-with-glycan-to-glyconnect", "NFT", "NXT" ], [ "P0DTC2-1", "1074", "G06356OH", "n-linked", "protein_xref_pubmed", "32366695", "protein_xref_glyconnect", "2840", "unique-site-with-glycan-to-glyconnect", "NFT", "NXT" ], [ "P0DTC2-1", "1074", "G08293MJ", "n-linked", "protein_xref_pubmed", "32366695", "protein_xref_unicarbkb", "P0DTC2", "unique-site-with-glycan-to-unicarbkb", "NFT", "NXT" ], [ "P0DTC2-1", "1074", "G08293MJ", "n-linked", "protein_xref_unicarbkb", "P0DTC2", "protein_xref_unicarbkb", "P0DTC2", "unique-site-with-glycan-to-unicarbkb", "NFT", "NXT" ], [ "P0DTC2-1", "1074", "G09528DL", "n-linked", "protein_xref_pubmed", "32366695", "protein_xref_unicarbkb", "P0DTC2", "unique-site-with-glycan-to-unicarbkb", "NFT", "NXT" ], [ "P0DTC2-1", "1074", "G09528DL", "n-linked", "protein_xref_unicarbkb", "P0DTC2", "protein_xref_unicarbkb", "P0DTC2", "unique-site-with-glycan-to-unicarbkb", "NFT", "NXT" ], [ "P0DTC2-1", "1074", "G10256JP", "n-linked", "protein_xref_glyconnect", "2838", "protein_xref_glyconnect", "2838", "unique-site-with-glycan-to-glyconnect", "NFT", "NXT" ], [ "P0DTC2-1", "1074", "G10256JP", "n-linked", "protein_xref_glyconnect", "2840", "protein_xref_glyconnect", "2840", "unique-site-with-glycan-to-glyconnect", "NFT", "NXT" ], [ "P0DTC2-1", "1074", "G10256JP", "n-linked", "protein_xref_pubmed", "32363391", "protein_xref_glyconnect", "2838", "unique-site-with-glycan-to-glyconnect", "NFT", "NXT" ], [ "P0DTC2-1", "1074", "G10256JP", "n-linked", "protein_xref_pubmed", "32366695", "protein_xref_glyconnect", "2840", "unique-site-with-glycan-to-glyconnect", "NFT", "NXT" ], [ "P0DTC2-1", "1074", "G10339FR", "n-linked", "protein_xref_doi", "10.1101/2020.03.28.013276v2", "protein_xref_unicarbkb", "P0DTC2", "unique-site-with-glycan-to-unicarbkb", "NFT", "NXT" ], [ "P0DTC2-1", "1074", "G10339FR", "n-linked", "protein_xref_pubmed", "32366695", "protein_xref_unicarbkb", "P0DTC2", "unique-site-with-glycan-to-unicarbkb", "NFT", "NXT" ], [ "P0DTC2-1", "1074", "G10339FR", "n-linked", "protein_xref_unicarbkb", "P0DTC2", "protein_xref_unicarbkb", "P0DTC2", "unique-site-with-glycan-to-unicarbkb", "NFT", "NXT" ], [ "P0DTC2-1", "1074", "G10486CT", "n-linked", "protein_xref_pubmed", "32366695", "protein_xref_unicarbkb", "P0DTC2", "unique-site-with-glycan-to-unicarbkb", "NFT", "NXT" ], [ "P0DTC2-1", "1074", "G10486CT", "n-linked", "protein_xref_unicarbkb", "P0DTC2", "protein_xref_unicarbkb", "P0DTC2", "unique-site-with-glycan-to-unicarbkb", "NFT", "NXT" ], [ "P0DTC2-1", "1074", "G10773YW", "n-linked", "protein_xref_glyconnect", "2840", "protein_xref_glyconnect", "2840", "unique-site-with-glycan-to-glyconnect", "NFT", "NXT" ], [ "P0DTC2-1", "1074", "G10773YW", "n-linked", "protein_xref_pubmed", "32366695", "protein_xref_glyconnect", "2840", "unique-site-with-glycan-to-glyconnect", "NFT", "NXT" ], [ "P0DTC2-1", "1074", "G11870QZ", "n-linked", "protein_xref_glyconnect", "2840", "protein_xref_glyconnect", "2840", "unique-site-with-glycan-to-glyconnect", "NFT", "NXT" ], [ "P0DTC2-1", "1074", "G11870QZ", "n-linked", "protein_xref_pubmed", "32366695", "protein_xref_glyconnect", "2840", "unique-site-with-glycan-to-glyconnect", "NFT", "NXT" ], [ "P0DTC2-1", "1074", "G12313PD", "n-linked", "protein_xref_glyconnect", "2839", "protein_xref_glyconnect", "2839", "unique-site-with-glycan-to-glyconnect", "NFT", "NXT" ], [ "P0DTC2-1", "1074", "G12313PD", "n-linked", "protein_xref_pubmed", "32518941", "protein_xref_glyconnect", "2839", "unique-site-with-glycan-to-glyconnect", "NFT", "NXT" ], [ "P0DTC2-1", "1074", "G12849CJ", "n-linked", "protein_xref_glyconnect", "2839", "protein_xref_glyconnect", "2839", "unique-site-with-glycan-to-glyconnect", "NFT", "NXT" ], [ "P0DTC2-1", "1074", "G12849CJ", "n-linked", "protein_xref_pubmed", "32518941", "protein_xref_glyconnect", "2839", "unique-site-with-glycan-to-glyconnect", "NFT", "NXT" ], [ "P0DTC2-1", "1074", "G14669DU", "n-linked", "protein_xref_glyconnect", "2839", "protein_xref_glyconnect", "2839", "unique-site-with-glycan-to-glyconnect", "NFT", "NXT" ], [ "P0DTC2-1", "1074", "G14669DU", "n-linked", "protein_xref_glyconnect", "2840", "protein_xref_glyconnect", "2840", "unique-site-with-glycan-to-glyconnect", "NFT", "NXT" ], [ "P0DTC2-1", "1074", "G14669DU", "n-linked", "protein_xref_pubmed", "32366695", "protein_xref_glyconnect", "2840", "unique-site-with-glycan-to-glyconnect", "NFT", "NXT" ], [ "P0DTC2-1", "1074", "G14669DU", "n-linked", "protein_xref_pubmed", "32518941", "protein_xref_glyconnect", "2839", "unique-site-with-glycan-to-glyconnect", "NFT", "NXT" ], [ "P0DTC2-1", "1074", "G14994KB", "n-linked", "protein_xref_glyconnect", "2838", "protein_xref_glyconnect", "2838", "unique-site-with-glycan-to-glyconnect", "NFT", "NXT" ], [ "P0DTC2-1", "1074", "G14994KB", "n-linked", "protein_xref_glyconnect", "2840", "protein_xref_glyconnect", "2840", "unique-site-with-glycan-to-glyconnect", "NFT", "NXT" ], [ "P0DTC2-1", "1074", "G14994KB", "n-linked", "protein_xref_pubmed", "32363391", "protein_xref_glyconnect", "2838", "unique-site-with-glycan-to-glyconnect", "NFT", "NXT" ], [ "P0DTC2-1", "1074", "G14994KB", "n-linked", "protein_xref_pubmed", "32366695", "protein_xref_glyconnect", "2840", "unique-site-with-glycan-to-glyconnect", "NFT", "NXT" ], [ "P0DTC2-1", "1074", "G15486FH", "n-linked", "protein_xref_doi", "10.1101/2020.03.28.013276v2", "protein_xref_unicarbkb", "P0DTC2", "unique-site-with-glycan-to-unicarbkb", "NFT", "NXT" ], [ "P0DTC2-1", "1074", "G15486FH", "n-linked", "protein_xref_pubmed", "32366695", "protein_xref_unicarbkb", "P0DTC2", "unique-site-with-glycan-to-unicarbkb", "NFT", "NXT" ], [ "P0DTC2-1", "1074", "G15486FH", "n-linked", "protein_xref_unicarbkb", "P0DTC2", "protein_xref_unicarbkb", "P0DTC2", "unique-site-with-glycan-to-unicarbkb", "NFT", "NXT" ], [ "P0DTC2-1", "1074", "G16407EV", "n-linked", "protein_xref_doi", "10.1101/2020.03.28.013276v2", "protein_xref_unicarbkb", "P0DTC2", "unique-site-with-glycan-to-unicarbkb", "NFT", "NXT" ], [ "P0DTC2-1", "1074", "G16407EV", "n-linked", "protein_xref_unicarbkb", "P0DTC2", "protein_xref_unicarbkb", "P0DTC2", "unique-site-with-glycan-to-unicarbkb", "NFT", "NXT" ], [ "P0DTC2-1", "1074", "G20425TQ", "n-linked", "protein_xref_glyconnect", "2840", "protein_xref_glyconnect", "2840", "unique-site-with-glycan-to-glyconnect", "NFT", "NXT" ], [ "P0DTC2-1", "1074", "G20425TQ", "n-linked", "protein_xref_pubmed", "32366695", "protein_xref_glyconnect", "2840", "unique-site-with-glycan-to-glyconnect", "NFT", "NXT" ], [ "P0DTC2-1", "1074", "G20956ZV", "n-linked", "protein_xref_doi", "10.1101/2020.03.28.013276v2", "protein_xref_unicarbkb", "P0DTC2", "unique-site-with-glycan-to-unicarbkb", "NFT", "NXT" ], [ "P0DTC2-1", "1074", "G20956ZV", "n-linked", "protein_xref_pubmed", "32366695", "protein_xref_unicarbkb", "P0DTC2", "unique-site-with-glycan-to-unicarbkb", "NFT", "NXT" ], [ "P0DTC2-1", "1074", "G20956ZV", "n-linked", "protein_xref_unicarbkb", "P0DTC2", "protein_xref_unicarbkb", "P0DTC2", "unique-site-with-glycan-to-unicarbkb", "NFT", "NXT" ], [ "P0DTC2-1", "1074", "G21726WW", "n-linked", "protein_xref_doi", "10.1101/2020.03.28.013276v2", "protein_xref_unicarbkb", "P0DTC2", "unique-site-with-glycan-to-unicarbkb", "NFT", "NXT" ], [ "P0DTC2-1", "1074", "G21726WW", "n-linked", "protein_xref_unicarbkb", "P0DTC2", "protein_xref_unicarbkb", "P0DTC2", "unique-site-with-glycan-to-unicarbkb", "NFT", "NXT" ], [ "P0DTC2-1", "1074", "G23294PN", "n-linked", "protein_xref_glyconnect", "2840", "protein_xref_glyconnect", "2840", "unique-site-with-glycan-to-glyconnect", "NFT", "NXT" ], [ "P0DTC2-1", "1074", "G23294PN", "n-linked", "protein_xref_pubmed", "32366695", "protein_xref_glyconnect", "2840", "unique-site-with-glycan-to-glyconnect", "NFT", "NXT" ], [ "P0DTC2-1", "1074", "G23432EQ", "n-linked", "protein_xref_glyconnect", "2840", "protein_xref_glyconnect", "2840", "unique-site-with-glycan-to-glyconnect", "NFT", "NXT" ], [ "P0DTC2-1", "1074", "G23432EQ", "n-linked", "protein_xref_pubmed", "32366695", "protein_xref_glyconnect", "2840", "unique-site-with-glycan-to-glyconnect", "NFT", "NXT" ], [ "P0DTC2-1", "1074", "G23453IV", "n-linked", "protein_xref_glyconnect", "2839", "protein_xref_glyconnect", "2839", "unique-site-with-glycan-to-glyconnect", "NFT", "NXT" ], [ "P0DTC2-1", "1074", "G23453IV", "n-linked", "protein_xref_glyconnect", "2840", "protein_xref_glyconnect", "2840", "unique-site-with-glycan-to-glyconnect", "NFT", "NXT" ], [ "P0DTC2-1", "1074", "G23453IV", "n-linked", "protein_xref_pubmed", "32366695", "protein_xref_glyconnect", "2840", "unique-site-with-glycan-to-glyconnect", "NFT", "NXT" ], [ "P0DTC2-1", "1074", "G23453IV", "n-linked", "protein_xref_pubmed", "32518941", "protein_xref_glyconnect", "2839", "unique-site-with-glycan-to-glyconnect", "NFT", "NXT" ], [ "P0DTC2-1", "1074", "G23863VK", "n-linked", "protein_xref_glyconnect", "2838", "protein_xref_glyconnect", "2838", "unique-site-with-glycan-to-glyconnect", "NFT", "NXT" ], [ "P0DTC2-1", "1074", "G23863VK", "n-linked", "protein_xref_pubmed", "32363391", "protein_xref_glyconnect", "2838", "unique-site-with-glycan-to-glyconnect", "NFT", "NXT" ], [ "P0DTC2-1", "1074", "G24954UD", "n-linked", "protein_xref_glyconnect", "2838", "protein_xref_glyconnect", "2838", "unique-site-with-glycan-to-glyconnect", "NFT", "NXT" ], [ "P0DTC2-1", "1074", "G24954UD", "n-linked", "protein_xref_glyconnect", "2840", "protein_xref_glyconnect", "2840", "unique-site-with-glycan-to-glyconnect", "NFT", "NXT" ], [ "P0DTC2-1", "1074", "G24954UD", "n-linked", "protein_xref_pubmed", "32363391", "protein_xref_glyconnect", "2838", "unique-site-with-glycan-to-glyconnect", "NFT", "NXT" ] ] }, "readme": "Name\n - SARS-CoV2 Glycosylation Unique to Data sources\n\nVersion\n - 1.8.24\n\nCreated on\n - 2020-06-04T10:46:09.954822\n\nModified on\n - \n\nCreated by\n - [jeetvora@gwu.edu]\n\nAuthors\n - \n\nChecksum\n - \n\nExecution Domain\n Scripts\n\n Software Prerequisites\n\nI/O Domain\n Output Subdomain\n Name: sarscov2_proteoform_glycosylation_unique_sources.csv\n URI: http://data.glygen.org/datasets/reviewed/sarscov2_proteoform_glycosylation_unique_sources.csv\n Name: sarscov2_proteoform_glycosylation_unique_sources.stat.csv\n URI: http://data.glygen.org/datasets/reviewed/sarscov2_proteoform_glycosylation_unique_sources.stat.csv\n\nFields\n Name: \"src_xref_key\"\n Description: \"Source Xref key\"\n Unique Values: \"1\"\n Name: \"xref_id\"\n Description: \"ID of the X-ref\"\n Unique Values: \"119\"\n Name: \"title\"\n Description: \"Title of the published article in the journal\"\n Unique Values: \"119\"\n Name: \"src_xref_id\"\n Description: \"Source X-ref ID\"\n Unique Values: \"120\"\n Name: \"journal_name\"\n Description: \"The name of the journal in which the article is published\"\n Unique Values: \"49\"\n Name: \"authors\"\n Description: \"NA\"\n Unique Values: \"118\"\n Name: \"publication_date\"\n Description: \"Contains the full date on which the issue of the journal was published. Sourced from MEDLINE/PubMed data element(fields) description.\"\n Unique Values: \"117\"\n Name: \"glytoucan_ac\"\n Description: \"Unique accession assigned to the registered glycan structure in GlyTouCan database\"\n Unique Values: \"115\"\n Name: \"xref_key\"\n Description: \"Source key associated to the xref_id\"\n Unique Values: \"1\"", "downloadurl": "/ln2data/releases/data/v-1.8.24/reviewed/sarscov2_proteoform_glycosylation_unique_sources.csv" }