{ "bcoid": "GLY_000485", "title": "Rat Proteoform Citations (GlyConnect)", "description": "The Rat Proteoform Citations (GlyConnect) dataset provides citation details corresponding to the PubMed ...", "filename": "rat_proteoform_citations_glyconnect.csv", "filetype": "csv", "categories": { "species": "Rattus norvegicus", "molecule": "Proteoform", "tags": "Protein Citations", "file_type": "csv", "status": "Reviewed", "scope": "internal" }, "minitable": { "content": [ [ "Q62635-1...", "G20165PS..." ], [ "P08289-1...", "G86357DX..." ] ], "headers": [ "uniprotkb_ca...", "glytoucan_ac..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "uniprotkb_canonical_ac" }, { "type": "string", "label": "glytoucan_ac" }, { "type": "string", "label": "title" }, { "type": "string", "label": "journal_name" }, { "type": "string", "label": "publication_date" }, { "type": "string", "label": "authors" }, { "type": "string", "label": "xref_key" }, { "type": "string", "label": "xref_id" }, { "type": "string", "label": "src_xref_key" }, { "type": "string", "label": "src_xref_id" } ], [ "Q62635-1", "G20165PS", "The glycosylation of rat intestinal Muc2 mucin varies between rat strains and the small and large intestine. 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Occurrence of fucosylated high-mannose-type and hybrid-type sugar chains.", "European journal of biochemistry", "1996 Mar 1", "Endo T, Fujiwara T, Ikehara Y, Kobata A", "protein_xref_pubmed", "8612632", "protein_xref_glyconnect", "12" ], [ "P08289-1", "G20425TQ", "Comparative study of the sugar chains of alkaline phosphatases purified from rat liver and rat AH-130 hepatoma cells. Occurrence of fucosylated high-mannose-type and hybrid-type sugar chains.", "European journal of biochemistry", "1996 Mar 1", "Endo T, Fujiwara T, Ikehara Y, Kobata A", "protein_xref_pubmed", "8612632", "protein_xref_glyconnect", "12" ], [ "P98158-1", "G67381VP", "Characterization of the N-linked oligosaccharides of megalin (gp330) from rat kidney.", "Glycobiology", "2000 Mar", "Morelle W, Haslam SM, Ziak M, Roth J, Morris HR, Dell A", "protein_xref_pubmed", "10704528", "protein_xref_glyconnect", "344" ], [ "P98158-1", "G64527OM", "Characterization of the N-linked oligosaccharides of megalin (gp330) from rat kidney.", "Glycobiology", "2000 Mar", "Morelle W, Haslam SM, Ziak M, Roth J, Morris HR, Dell A", "protein_xref_pubmed", "10704528", "protein_xref_glyconnect", "344" ], [ "P08932-1", "G29130SY", "Comparative study of asparagine-linked glycans of plasma T-kininogen in normal rats and during acute inflammation.", "The Biochemical journal", "1992 Apr 15", "Baussant T, Alonso C, Wieruszeski JM, Strecker G, Montreuil J, Alhenc-Gelas F, Michalski JC", "protein_xref_pubmed", "1575697", "protein_xref_glyconnect", "604" ], [ "P08932-1", "G28916LJ", "Comparative study of asparagine-linked glycans of plasma T-kininogen in normal rats and during acute inflammation.", "The Biochemical journal", "1992 Apr 15", "Baussant T, Alonso C, Wieruszeski JM, Strecker G, Montreuil J, Alhenc-Gelas F, Michalski JC", "protein_xref_pubmed", "1575697", "protein_xref_glyconnect", "604" ], [ "P01048-1", "G29130SY", "Comparative study of asparagine-linked glycans of plasma T-kininogen in normal rats and during acute inflammation.", "The Biochemical journal", "1992 Apr 15", "Baussant T, Alonso C, Wieruszeski JM, Strecker G, Montreuil J, Alhenc-Gelas F, Michalski JC", "protein_xref_pubmed", "1575697", "protein_xref_glyconnect", "604" ], [ "P01048-1", "G28916LJ", "Comparative study of asparagine-linked glycans of plasma T-kininogen in normal rats and during acute inflammation.", "The Biochemical journal", "1992 Apr 15", "Baussant T, Alonso C, Wieruszeski JM, Strecker G, Montreuil J, Alhenc-Gelas F, Michalski JC", "protein_xref_pubmed", "1575697", "protein_xref_glyconnect", "604" ], [ "Q62635-1", "G40778XV", "The glycosylation of rat intestinal Muc2 mucin varies between rat strains and the small and large intestine. A study of O-linked oligosaccharides by a mass spectrometric approach.", "The Journal of biological chemistry", "1997 Oct 24", "Karlsson NG, Herrmann A, Karlsson H, Johansson ME, Carlstedt I, Hansson GC", "protein_xref_pubmed", "9341141", "protein_xref_glyconnect", "380" ], [ "Q62765-1", "G43453KC", "Structural characterization of recombinant soluble rat neuroligin 1: mapping of secondary structure and glycosylation by mass spectrometry.", "Biochemistry", "2004 Feb 17", "Hoffman RC, Jennings LL, Tsigelny I, Comoletti D, Flynn RE, Sudhof TC, Taylor P", "protein_xref_pubmed", "14769026", "protein_xref_glyconnect", "433" ], [ "Q62765-1", "G82592ZH", "Structural characterization of recombinant soluble rat neuroligin 1: mapping of secondary structure and glycosylation by mass spectrometry.", "Biochemistry", "2004 Feb 17", "Hoffman RC, Jennings LL, Tsigelny I, Comoletti D, Flynn RE, Sudhof TC, Taylor P", "protein_xref_pubmed", "14769026", "protein_xref_glyconnect", "433" ], [ "P10252-1", "G00670OT", "Oligosaccharide analysis and molecular modeling of soluble forms of glycoproteins belonging to the Ly-6, scavenger receptor, and immunoglobulin superfamilies expressed in Chinese hamster ovary cells.", "Glycobiology", "1999 May", "Rudd PM, Wormald MR, Harvey DJ, Devasahayam M, McAlister MS, Brown MH, Davis SJ, Barclay AN, Dwek RA", "protein_xref_pubmed", "10207177", "protein_xref_glyconnect", "371" ], [ "P10252-1", "G79568CQ", "Oligosaccharide analysis and molecular modeling of soluble forms of glycoproteins belonging to the Ly-6, scavenger receptor, and immunoglobulin superfamilies expressed in Chinese hamster ovary cells.", "Glycobiology", "1999 May", "Rudd PM, Wormald MR, Harvey DJ, Devasahayam M, McAlister MS, Brown MH, Davis SJ, Barclay AN, Dwek RA", "protein_xref_pubmed", "10207177", "protein_xref_glyconnect", "371" ], [ "P08289-1", "G98719SR", "Comparative study of the sugar chains of alkaline phosphatases purified from rat liver and rat AH-130 hepatoma cells. Occurrence of fucosylated high-mannose-type and hybrid-type sugar chains.", "European journal of biochemistry", "1996 Mar 1", "Endo T, Fujiwara T, Ikehara Y, Kobata A", "protein_xref_pubmed", "8612632", "protein_xref_glyconnect", "12" ], [ "P08289-1", "G70101JE", "Comparative study of the sugar chains of alkaline phosphatases purified from rat liver and rat AH-130 hepatoma cells. Occurrence of fucosylated high-mannose-type and hybrid-type sugar chains.", "European journal of biochemistry", "1996 Mar 1", "Endo T, Fujiwara T, Ikehara Y, Kobata A", "protein_xref_pubmed", "8612632", "protein_xref_glyconnect", "12" ], [ "P08289-1", "G29857RC", "Comparative study of the sugar chains of alkaline phosphatases purified from rat liver and rat AH-130 hepatoma cells. Occurrence of fucosylated high-mannose-type and hybrid-type sugar chains.", "European journal of biochemistry", "1996 Mar 1", "Endo T, Fujiwara T, Ikehara Y, Kobata A", "protein_xref_pubmed", "8612632", "protein_xref_glyconnect", "12" ], [ "Q62635-1", "G17236TT", "Characterization of two different glycosylated domains from the insoluble mucin complex of rat small intestine.", "The Journal of biological chemistry", "1993 Sep 5", "Carlstedt I, Herrmann A, Karlsson H, Sheehan J, Fransson LA, Hansson GC", "protein_xref_pubmed", "8360170", "protein_xref_glyconnect", "381" ], [ "Q62635-1", "G47967RK", "Characterization of two different glycosylated domains from the insoluble mucin complex of rat small intestine.", "The Journal of biological chemistry", "1993 Sep 5", "Carlstedt I, Herrmann A, Karlsson H, Sheehan J, Fransson LA, Hansson GC", "protein_xref_pubmed", "8360170", "protein_xref_glyconnect", "381" ], [ "P02764-1", "G45695EY", "Comparative study of the carbohydrate moieties of rat and human plasma alpha 1-acid glycoproteins.", "The Journal of biological chemistry", "1981 Aug 25", "Yoshima H, Matsumoto A, Mizuochi T, Kawasaki T, Kobata A", "protein_xref_pubmed", "7263664", "protein_xref_glyconnect", "18" ], [ "P02764-1", "G72797UR", "Comparative study of the carbohydrate moieties of rat and human plasma alpha 1-acid glycoproteins.", "The Journal of biological chemistry", "1981 Aug 25", "Yoshima H, Matsumoto A, Mizuochi T, Kawasaki T, Kobata A", "protein_xref_pubmed", "7263664", "protein_xref_glyconnect", "18" ], [ "P12346-1", "G00320ZP", "Carbohydrate microheterogeneity of rat serotransferrin. Determination of glycan primary structures and characterization of a new type of trisialylated diantennary glycan.", "European journal of biochemistry", "1991 Jan 30", "Spik G, Coddeville B, Strecker G, Montreuil J, Regoeczi E, Chindemi PA, Rudolph JR", "protein_xref_pubmed", "1997323", "protein_xref_glyconnect", "557" ], [ "P12346-1", "G28916LJ", "Carbohydrate microheterogeneity of rat serotransferrin. Determination of glycan primary structures and characterization of a new type of trisialylated diantennary glycan.", "European journal of biochemistry", "1991 Jan 30", "Spik G, Coddeville B, Strecker G, Montreuil J, Regoeczi E, Chindemi PA, Rudolph JR", "protein_xref_pubmed", "1997323", "protein_xref_glyconnect", "557" ], [ "Q62765-1", "G14367JE", "Structural characterization of recombinant soluble rat neuroligin 1: mapping of secondary structure and glycosylation by mass spectrometry.", "Biochemistry", "2004 Feb 17", "Hoffman RC, Jennings LL, Tsigelny I, Comoletti D, Flynn RE, Sudhof TC, Taylor P", "protein_xref_pubmed", "14769026", "protein_xref_glyconnect", "433" ], [ "Q62765-1", "G72667IM", "Structural characterization of recombinant soluble rat neuroligin 1: mapping of secondary structure and glycosylation by mass spectrometry.", "Biochemistry", "2004 Feb 17", "Hoffman RC, Jennings LL, Tsigelny I, Comoletti D, Flynn RE, Sudhof TC, Taylor P", "protein_xref_pubmed", "14769026", "protein_xref_glyconnect", "433" ], [ "Q62635-1", "G23990GP", "Characterization of two different glycosylated domains from the insoluble mucin complex of rat small intestine.", "The Journal of biological chemistry", "1993 Sep 5", "Carlstedt I, Herrmann A, Karlsson H, Sheehan J, Fransson LA, Hansson GC", "protein_xref_pubmed", "8360170", "protein_xref_glyconnect", "380" ], [ "P10252-1", "G22768VO", "Oligosaccharide analysis and molecular modeling of soluble forms of glycoproteins belonging to the Ly-6, scavenger receptor, and immunoglobulin superfamilies expressed in Chinese hamster ovary cells.", "Glycobiology", "1999 May", "Rudd PM, Wormald MR, Harvey DJ, Devasahayam M, McAlister MS, Brown MH, Davis SJ, Barclay AN, Dwek RA", "protein_xref_pubmed", "10207177", "protein_xref_glyconnect", "371" ], [ "P10252-1", "G14669DU", "Oligosaccharide analysis and molecular modeling of soluble forms of glycoproteins belonging to the Ly-6, scavenger receptor, and immunoglobulin superfamilies expressed in Chinese hamster ovary cells.", "Glycobiology", "1999 May", "Rudd PM, Wormald MR, Harvey DJ, Devasahayam M, McAlister MS, Brown MH, Davis SJ, Barclay AN, Dwek RA", "protein_xref_pubmed", "10207177", "protein_xref_glyconnect", "371" ], [ "Q62635-1", "G85282JA", "Molecular characterization of the large heavily glycosylated domain glycopeptide from the rat small intestinal Muc2 mucin.", "Glycoconjugate journal", "1996 Oct", "Karlsson NG, Johansson ME, Asker N, Karlsson H, Gendler SJ, Carlstedt I, Hansson GC", "protein_xref_pubmed", "8910009", "protein_xref_glyconnect", "380" ], [ "Q62635-1", "G88908BO", "The glycosylation of rat intestinal Muc2 mucin varies between rat strains and the small and large intestine. A study of O-linked oligosaccharides by a mass spectrometric approach.", "The Journal of biological chemistry", "1997 Oct 24", "Karlsson NG, Herrmann A, Karlsson H, Johansson ME, Carlstedt I, Hansson GC", "protein_xref_pubmed", "9341141", "protein_xref_glyconnect", "380" ], [ "Q62765-1", "G76950LE", "Structural characterization of recombinant soluble rat neuroligin 1: mapping of secondary structure and glycosylation by mass spectrometry.", "Biochemistry", "2004 Feb 17", "Hoffman RC, Jennings LL, Tsigelny I, Comoletti D, Flynn RE, Sudhof TC, Taylor P", "protein_xref_pubmed", "14769026", "protein_xref_glyconnect", "433" ], [ "Q62765-1", "G29931IJ", "Structural characterization of recombinant soluble rat neuroligin 1: mapping of secondary structure and glycosylation by mass spectrometry.", "Biochemistry", "2004 Feb 17", "Hoffman RC, Jennings LL, Tsigelny I, Comoletti D, Flynn RE, Sudhof TC, Taylor P", "protein_xref_pubmed", "14769026", "protein_xref_glyconnect", "433" ] ] }, "readme": "Name\n - Rat Proteoform Citations (GlyConnect)\n\nVersion\n - 1.8.24\n\nCreated on\n - 2020-04-28T11:07:38.533264\n\nModified on\n - 2020-04-28T11:09:38.064805\n\nCreated by\n - Rahi Navelkar [rsn13@gwu.edu], Jeet Vora [jeetvora@gwu.edu], Robel Kahsay [rykahsay@gwu.edu]\n\nAuthors\n - Frederique Lisacek [frederique.lisacek@sib.swiss], Julien Mariethoz [julien.mariethoz@sib.swiss]\n\nChecksum\n - \n\nUsability Domain\n - The Rat Proteoform Citations (GlyConnect) dataset provides citation details corresponding to the PubMed ID (PMID) from file https://data.glygen.org/GLYDS000329. The script accesses the NCBI ENTREZ infrastructure to retrieve the publication information of the given PMID. The dataset is contributed by GlyGen and processed by GlyGen. If you use this dataset please provide proper attribution to GlyConnect (https://glyconnect.expasy.org/).\n\nDescription Domain\n Keywords\n - PMID\n - journal\n - citations\n - authors\n - GlyConnect\n - PubMed\n\n Pipeline Steps\n - Step-1: The script parses the input file for PMIDs and accesses the NCBI Entrez infrastructure to download the publication information of the corresponding PMIDs\n\nExecution Domain\n Scripts - https://github.com/GW-HIVE/glygen-backend-integration/blob/master/pipeline/integrator/make-proteoform-dataset.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: rat_proteoform_glycosylation_sites_glyconnect.csv\n URI: https://data.glygen.org/ln2data/releases/data/v-1.8.24/reviewed/rat_proteoform_glycosylation_sites_glyconnect.csv\n Output Subdomain\n Name: rat_proteoform_citations_glyconnect.csv\n URI: http://data.glygen.org/ln2data/releases/data/v-1.8.24/reviewed/rat_proteoform_citations_glyconnect.csv\n Name: rat_proteoform_citations_glyconnect.stat.csv\n URI: http://data.glygen.org/ln2data/releases/data/v-1.8.24/reviewed/rat_proteoform_citations_glyconnect.stat.csv\n\nFields\n Name: \"src_xref_key\"\n Description: \"Source Xref key\"\n Unique Values: \"1\"\n Name: \"xref_id\"\n Description: \"ID of the X-ref\"\n Unique Values: \"119\"\n Name: \"title\"\n Description: \"Title of the published article in the journal\"\n Unique Values: \"119\"\n Name: \"src_xref_id\"\n Description: \"Source X-ref ID\"\n Unique Values: \"120\"\n Name: \"journal_name\"\n Description: \"The name of the journal in which the article is published\"\n Unique Values: \"49\"\n Name: \"authors\"\n Description: \"NA\"\n Unique Values: \"118\"\n Name: \"publication_date\"\n Description: \"Contains the full date on which the issue of the journal was published. Sourced from MEDLINE/PubMed data element(fields) description.\"\n Unique Values: \"117\"\n Name: \"glytoucan_ac\"\n Description: \"Unique accession assigned to the registered glycan structure in GlyTouCan database\"\n Unique Values: \"115\"\n Name: \"xref_key\"\n Description: \"Source key associated to the xref_id\"\n Unique Values: \"1\"", "downloadurl": "/ln2data/releases/data/v-1.8.24/reviewed/rat_proteoform_citations_glyconnect.csv" }