{ "bcoid": "GLY_000464", "title": "GlyGen-Pharos Crossreferences Mapping", "description": "The GlyGen-Pharos Crossreferences Mapping dataset contains GlyGen's human [taxid:9606] UniProtKB accessions ...", "filename": "protein_glygen_pharos_xref_mapping.csv", "filetype": "csv", "categories": { "species": "Homo sapiens", "molecule": "Protein", "tags": "GlyGen-Pharos Crossreferences", "file_type": "csv", "status": "Reviewed", "scope": "internal" }, "minitable": { "content": [ [ "Q13507...", "https://glyg..." ], [ "Q13506...", "https://glyg..." ] ], "headers": [ "uniprotkb_ac...", "glygen_prote..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "uniprotkb_ac" }, { "type": "string", "label": "glygen_protein_url" } ], [ "Q13507", "https://glygen.org/protein/Q13507" ], [ "Q13506", "https://glygen.org/protein/Q13506" ], [ "Q9HCK8", "https://glygen.org/protein/Q9HCK8" ], [ "Q9HCK5", "https://glygen.org/protein/Q9HCK5" ], [ "A6NFN9", "https://glygen.org/protein/A6NFN9" ], [ "Q9HCK4", "https://glygen.org/protein/Q9HCK4" ], [ "Q9HCK1", "https://glygen.org/protein/Q9HCK1" ], [ "Q9HCK0", "https://glygen.org/protein/Q9HCK0" ], [ "Q9Y3Y4", "https://glygen.org/protein/Q9Y3Y4" ], [ "Q5MIZ7", "https://glygen.org/protein/Q5MIZ7" ], [ "A6NFN3", "https://glygen.org/protein/A6NFN3" ], [ "Q86VB7", "https://glygen.org/protein/Q86VB7" ], [ "Q68G74", "https://glygen.org/protein/Q68G74" ], [ "A0A0J9YWL9", "https://glygen.org/protein/A0A0J9YWL9" ], [ "Q9Y3Y2", "https://glygen.org/protein/Q9Y3Y2" ], [ "Q68G75", "https://glygen.org/protein/Q68G75" ], [ "P28347", "https://glygen.org/protein/P28347" ], [ "Q86V88", "https://glygen.org/protein/Q86V88" ], [ "Q86UW8", "https://glygen.org/protein/Q86UW8" ], [ "Q9Y3Q4", "https://glygen.org/protein/Q9Y3Q4" ], [ "Q9BS34", "https://glygen.org/protein/Q9BS34" ], [ "Q86V87", "https://glygen.org/protein/Q86V87" ], [ "Q9Y3Q3", "https://glygen.org/protein/Q9Y3Q3" ], [ "Q86UW7", "https://glygen.org/protein/Q86UW7" ], [ "Q9Y426", "https://glygen.org/protein/Q9Y426" ], [ "Q86UW6", "https://glygen.org/protein/Q86UW6" ], [ "Q86V86", "https://glygen.org/protein/Q86V86" ], [ "Q9BRR3", "https://glygen.org/protein/Q9BRR3" ], [ "Q86V85", "https://glygen.org/protein/Q86V85" ], [ "Q9Y3Q0", "https://glygen.org/protein/Q9Y3Q0" ], [ "Q9BRR9", "https://glygen.org/protein/Q9BRR9" ], [ "Q9BRR8", "https://glygen.org/protein/Q9BRR8" ], [ "Q86UW2", "https://glygen.org/protein/Q86UW2" ], [ "Q9Y421", "https://glygen.org/protein/Q9Y421" ], [ "Q9BRR6", "https://glygen.org/protein/Q9BRR6" ], [ "Q86UW1", "https://glygen.org/protein/Q86UW1" ], [ "Q86V81", "https://glygen.org/protein/Q86V81" ], [ "Q9HCB6", "https://glygen.org/protein/Q9HCB6" ], [ "Q9BS31", "https://glygen.org/protein/Q9BS31" ], [ "Q9Y3Q8", "https://glygen.org/protein/Q9Y3Q8" ], [ "Q9Y3Q7", "https://glygen.org/protein/Q9Y3Q7" ], [ "Q9BRR0", "https://glygen.org/protein/Q9BRR0" ], [ "Q9NV64", "https://glygen.org/protein/Q9NV64" ], [ "Q9UIH9", "https://glygen.org/protein/Q9UIH9" ], [ "Q86UW9", "https://glygen.org/protein/Q86UW9" ], [ "Q9NUU6", "https://glygen.org/protein/Q9NUU6" ], [ "Q99766", "https://glygen.org/protein/Q99766" ], [ "Q9NV66", "https://glygen.org/protein/Q9NV66" ], [ "Q01523", "https://glygen.org/protein/Q01523" ], [ "Q9NUU7", "https://glygen.org/protein/Q9NUU7" ], [ "Q01524", "https://glygen.org/protein/Q01524" ], [ "Q99767", "https://glygen.org/protein/Q99767" ], [ "Q8WUU4", "https://glygen.org/protein/Q8WUU4" ], [ "Q8WUU5", "https://glygen.org/protein/Q8WUU5" ], [ "Q8WV60", "https://glygen.org/protein/Q8WV60" ], [ "Q8WUU8", "https://glygen.org/protein/Q8WUU8" ], [ "Q96P09", "https://glygen.org/protein/Q96P09" ], [ "Q8N9Y4", "https://glygen.org/protein/Q8N9Y4" ], [ "Q86UV7", "https://glygen.org/protein/Q86UV7" ], [ "Q9BRQ4", "https://glygen.org/protein/Q9BRQ4" ], [ "Q9Y3R5", "https://glygen.org/protein/Q9Y3R5" ], [ "Q86UV6", "https://glygen.org/protein/Q86UV6" ], [ "Q9BRQ3", "https://glygen.org/protein/Q9BRQ3" ], [ "Q9Y3R4", "https://glygen.org/protein/Q9Y3R4" ], [ "Q86UV5", "https://glygen.org/protein/Q86UV5" ], [ "Q9BRQ8", "https://glygen.org/protein/Q9BRQ8" ], [ "Q9UII4", "https://glygen.org/protein/Q9UII4" ], [ "Q6XCG6", "https://glygen.org/protein/Q6XCG6" ], [ "Q9Y3R0", "https://glygen.org/protein/Q9Y3R0" ], [ "Q86V71", "https://glygen.org/protein/Q86V71" ], [ "Q9BS26", "https://glygen.org/protein/Q9BS26" ], [ "Q9BRQ6", "https://glygen.org/protein/Q9BRQ6" ], [ "Q9UII2", "https://glygen.org/protein/Q9UII2" ], [ "Q9BRQ5", "https://glygen.org/protein/Q9BRQ5" ], [ "Q9NV70", "https://glygen.org/protein/Q9NV70" ], [ "Q9UII6", "https://glygen.org/protein/Q9UII6" ], [ "Q9UII5", "https://glygen.org/protein/Q9UII5" ], [ "A0A0J9YX35", "https://glygen.org/protein/A0A0J9YX35" ], [ "Q9NV72", "https://glygen.org/protein/Q9NV72" ], [ "Q9BRQ0", "https://glygen.org/protein/Q9BRQ0" ], [ "Q5MJ09", "https://glygen.org/protein/Q5MJ09" ], [ "Q5MJ08", "https://glygen.org/protein/Q5MJ08" ], [ "Q5MJ07", "https://glygen.org/protein/Q5MJ07" ], [ "Q99755", "https://glygen.org/protein/Q99755" ] ] }, "readme": "Name\n - GlyGen-Pharos Crossreferences Mapping\n\nVersion\n - 1.8.24\n\nCreated on\n - 2020-04-03T22:31:02.233246\n\nModified on\n - 2020-04-09T13:57:48.669044\n\nCreated by\n - Jeet Vora [jeetvora@gwu.edu], Rahi Navelkar [rsn13@gwu.edu], Robel Kahsay [rykahsay@gwu.edu]\n\nAuthors\n - \n\nChecksum\n - \n\nUsability Domain\n - The GlyGen-Pharos Crossreferences Mapping dataset contains GlyGen's human [taxid:9606] UniProtKB accessions and correponding GlyGen URLs. The dataset is derived from 2019-09 UniProtKB release.\n - The dataset is created for Pharos database to crosslink their protein page links to GlyGen protein pages.\n - The log file contains the Pharos protein accessions that could not be mapped to GlyGen protein accessions\n\nDescription Domain\n Keywords\n - Pharos\n - GlyGen\n - crossreferences\n - human\n - mouse\n - rat\n\n Pipeline Steps\n - Step-1: The script loads the human UniProtKB GlyGen accessions that mapped to the Pharos protein accessions along with the GlyGen protein accession URL and extracts it into csv dataset file\n\nExecution Domain\n Scripts - https://github.com/GW-HIVE/glygen-backend-integration/blob/master/pipeline/integrator/make-species-agnostic-dataset.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: human_protein_masterlist.csv\n URI: https://data.glygen.org/ln2data/releases/data/v-1.8.24/reviewed/human_protein_masterlist.csv\n Name: human_protein_xref_pharos.csv\n URI: https://data.glygen.org/ln2data/releases/data/v-1.8.24/reviewed/human_protein_xref_pharos.csv\n Output Subdomain\n Name: protein_glygen_pharos_xref_mapping.csv\n URI: https://data.glygen.org/ln2data/releases/data/v-1.8.24/reviewed/protein_glygen_pharos_xref_mapping.csv\n Name: glygen_pharos_xref_mapping.log\n URI: https://data.glygen.org/ln2data/releases/data/v-1.8.24/logs/glygen_pharos_xref_mapping.log\n Name: protein_glygen_pharos_xref_mapping.stat.csv\n URI: https://data.glygen.org/ln2data/releases/data/v-1.8.24/reviewed/protein_glygen_pharos_xref_mapping.stat.csv\n\nFields\n Name: \"src_xref_key\"\n Description: \"Source Xref key\"\n Unique Values: \"1\"\n Name: \"xref_id\"\n Description: \"ID of the X-ref\"\n Unique Values: \"119\"\n Name: \"title\"\n Description: \"Title of the published article in the journal\"\n Unique Values: \"119\"\n Name: \"src_xref_id\"\n Description: \"Source X-ref ID\"\n Unique Values: \"120\"\n Name: \"journal_name\"\n Description: \"The name of the journal in which the article is published\"\n Unique Values: \"49\"\n Name: \"authors\"\n Description: \"NA\"\n Unique Values: \"118\"\n Name: \"publication_date\"\n Description: \"Contains the full date on which the issue of the journal was published. Sourced from MEDLINE/PubMed data element(fields) description.\"\n Unique Values: \"117\"\n Name: \"glytoucan_ac\"\n Description: \"Unique accession assigned to the registered glycan structure in GlyTouCan database\"\n Unique Values: \"115\"\n Name: \"xref_key\"\n Description: \"Source key associated to the xref_id\"\n Unique Values: \"1\"", "downloadurl": "/ln2data/releases/data/v-1.8.24/reviewed/protein_glygen_pharos_xref_mapping.csv" }