{ "bcoid": "GLY_000436", "title": "SARS-CoV2 EBI-UniProtKB NT file", "description": "The SARS coronavirus (SARS-CoV-2 or 2019-nCov) EBI-UniProtKB NT file contains proteome data for sarscov2 ...", "filename": "sarscov2_protein_ntdata.nt", "filetype": "nt", "categories": { "species": "SARS coronavirus (SARS-CoV-2 or 2019-nCoV)", "molecule": "Protein", "tags": "EMBL-EBI-GlyGen-NT File", "file_type": "nt", "status": "Reviewed", "scope": "internal" }, "iconfilename": "nt_icon_all.png", "sampledata": { "type": "html", "data": "
   .\n  \"5\"^^ .\n  \"2020-04-22\"^^ .\n  \"2020-12-02\"^^ .\n  \"A0A663DJA2_SARS2\" .\n  \"false\"^^ .\n   .\n   .\n   .\n   .\n   .\n   .\n   .\n   .\n   .\n   .\n   .\n   .\n   .\n   .\n   .\n   .\n   .\n   .\n   .\n   .\n   .\n   .\n   .\n   .\n   .\n   .\n   .\n   .\n   .\n   .\n   .\n   .\n   .\n   .\n   .\n   .\n   .\n   .\n   .\n   .\n   .\n   .\n   .\n   .\n   .\n   .\n   .\n   .\n   .\n   .\n   .\n   .\n   .\n   .\n   .\n   .\n   .\n   .\n   .\n   .\n   .\n   .\n   .\n   .\n   .\n   .\n   .\n   .\n   .\n   .\n   .\n   .\n   .\n   .\n   .\n   .\n   .\n   .\n   .\n   .\n   .\n   .\n   .\n   .\n   .\n   .\n   .\n   .\n   .\n   .\n   .\n   .\n   .\n   .\n
" }, "readme": "Name\n - SARS-CoV2 EBI-UniProtKB NT file\n\nVersion\n - 1.8.24\n\nCreated on\n - 2020-04-03T11:46:41.584409\n\nModified on\n - 2020-04-10T12:27:51.924026\n\nCreated by\n - Jeet Vora [jeetvora@gwu.edu], Rahi Navelkar [rsn13@gwu.edu], Robel Kahsay [rykahsay@gwu.edu]\n\nAuthors\n - Maria Martin [martin@ebi.ac.uk], Preethi Vasudev [pvasudev@ebi.ac.uk]\n\nChecksum\n - \n\nUsability Domain\n - The SARS coronavirus (SARS-CoV-2 or 2019-nCov) EBI-UniProtKB NT file contains proteome data for sarscov2 [taxid:2697049] from UniProtKB and other EMBL-EBI resources as per the GlyGen specifications in the NT format The dataset is derived from 2020-01 UniProt release. If you use this dataset please provide proper attribution to EMBL-EBI-UniProtKB and GlyGen\n\nDescription Domain\n Keywords\n - NT\n - proteome\n - EMBL-EBI\n\n Pipeline Steps\n - Step-0: The NT file requires no processing after it is recieved from EMBL-EBI-UniProtKB\n\nExecution Domain\n Scripts - https://github.com/GW-HIVE/glygen-backend-integration/blob/master/pipeline/integrator/make-protein-dataset.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: uniprot-proteome-sars-cov-2.nt\n URI: https://data.glygen.org/ln2data/releases/data/v-1.8.24/source/uniprot-proteome-sars-cov-2.nt\n Output Subdomain\n Name: sarscov2_protein_ntdata.nt\n URI: http://data.glygen.org/ln2data/releases/data/v-1.8.24/reviewed/sarscov2_protein_ntdata.nt\n Name: sarscov2_protein_ntdata.stat.csv\n URI: http://data.glygen.org/ln2data/releases/data/v-1.8.24/reviewed/sarscov2_protein_ntdata.stat.csv\n\nFields\n Name: \"src_xref_key\"\n Description: \"Source Xref key\"\n Unique Values: \"1\"\n Name: \"xref_id\"\n Description: \"ID of the X-ref\"\n Unique Values: \"119\"\n Name: \"title\"\n Description: \"Title of the published article in the journal\"\n Unique Values: \"119\"\n Name: \"src_xref_id\"\n Description: \"Source X-ref ID\"\n Unique Values: \"120\"\n Name: \"journal_name\"\n Description: \"The name of the journal in which the article is published\"\n Unique Values: \"49\"\n Name: \"authors\"\n Description: \"NA\"\n Unique Values: \"118\"\n Name: \"publication_date\"\n Description: \"Contains the full date on which the issue of the journal was published. Sourced from MEDLINE/PubMed data element(fields) description.\"\n Unique Values: \"117\"\n Name: \"glytoucan_ac\"\n Description: \"Unique accession assigned to the registered glycan structure in GlyTouCan database\"\n Unique Values: \"115\"\n Name: \"xref_key\"\n Description: \"Source key associated to the xref_id\"\n Unique Values: \"1\"", "downloadurl": "/ln2data/releases/data/v-1.8.24/reviewed/sarscov2_protein_ntdata.nt" }