{
    "bcoid": "GLY_000378",
    "title": "HCV1a UniProtKB Xref ViPR",
    "description": "The Hepatitis C virus (genotype 1a, isolate H) UniProtKB Xref Virus Pathogen Resource (ViPR) contains ...",
    "filename": "hcv1a_protein_xref_viruspathogenresource.csv",
    "filetype": "csv",
    "categories": {
        "species": "Hepatitis C virus (genotype 1a, isolate H)",
        "molecule": "Protein",
        "tags": "ViPR cross-references",
        "file_type": "csv",
        "status": "Reviewed",
        "scope": "internal"
    },
    "minitable": {
        "content": [
            [
                "P27958-1...",
                "protein_xref..."
            ]
        ],
        "headers": [
            "uniprotkb_ca...",
            "xref_key..."
        ],
        "colwidth": [
            "40%",
            "20%"
        ]
    },
    "sampledata": {
        "type": "table",
        "data": [
            [
                {
                    "type": "string",
                    "label": "uniprotkb_canonical_ac"
                },
                {
                    "type": "string",
                    "label": "xref_key"
                },
                {
                    "type": "string",
                    "label": "xref_id"
                },
                {
                    "type": "string",
                    "label": "xref_label"
                }
            ],
            [
                "P27958-1",
                "protein_xref_viruspathogenresource",
                "hcv",
                ""
            ]
        ]
    },
    "readme": "Name\n   - HCV1a UniProtKB Xref ViPR\n\nVersion\n   - 1.8.24\n\nCreated on\n  - 2020-03-15T11:59:06.096223\n\nModified on\n   - 2020-04-09T17:51:44.919431\n\nCreated by\n   - Jeet Vora [jeetvora@gwu.edu], Rahi Navelkar [rsn13@gwu.edu], Robel Kahsay [rykahsay@gwu.edu]\n\nAuthors\n   - Maria Martin [martin@ebi.ac.uk], Preethi Vasudev [pvasudev@ebi.ac.uk]\n\nChecksum\n   - \n\nUsability Domain\n   - The Hepatitis C virus (genotype 1a, isolate H) UniProtKB Xref Virus Pathogen Resource (ViPR) contains hcv1a [taxid:11108] UniProtKB canonical accessions cross-referenced to Pfam database accessions/identifiers. The dataset is derived from 2019-09 UniProtKB release. If you use this dataset please provide proper attribution to EMBL-EBI-UniProtKB and GlyGen\n   - The Virus Pathogen Database and Analysis Resource (ViPR) is an integrative and comprehensive publicly available database and analysis resource to search, analyze, visualize, save and share data for viral pathogens in the U.S. National Institute of Allergy and Infectious Diseases (NIAID) Category A-C Priority Pathogen lists for biodefense research, and other viral pathogens causing emerging/reemerging infectious diseases.\n\nDescription Domain\n   Keywords\n   - VIrus Pathogen Resource (ViPR)\n   - Hepaptitis C Virus (HCV)\n   - cross-reference\n\n   Pipeline Steps\n   - Step-1: The script loads the UniProtKB canonical accessions that are cross-referenced to VIrus Pathogen Resource (ViPR) database accessions/identifiers from the triplestore containing triples from nt file and extracts the data as a csv dataset\n\nExecution Domain\n   Scripts   - https://github.com/GW-HIVE/glygen-backend-integration/blob/master/pipeline/integrator/make-protein-dataset.py\n\n\n   Software Prerequisites\n      Name: Python\n      Version: 2.7.5\n      URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n   Input Subdomain\n      Name: uniprot-proteome-hepatitis-c-virus-1a.nt\n      URI: https://data.glygen.org/ln2data/releases/data/v-1.8.24/source/uniprot-proteome-hepatitis-c-virus-1a.nt\n   Output Subdomain\n      Name: hcv1a_protein_xref_viruspathogenresource.csv\n      URI: http://data.glygen.org/ln2data/releases/data/v-1.8.24/reviewed/hcv1a_protein_xref_viruspathogenresource.csv\n      Name: hcv1a_protein_xref_viruspathogenresource.stat.csv\n      URI: http://data.glygen.org/ln2data/releases/data/v-1.8.24/reviewed/hcv1a_protein_xref_viruspathogenresource.stat.csv\n\nFields\n      Name: \"src_xref_key\"\n     Description: \"Source Xref  key\"\n      Unique Values: \"1\"\n      Name: \"xref_id\"\n     Description: \"ID of the X-ref\"\n      Unique Values: \"119\"\n      Name: \"title\"\n     Description: \"Title of the published article in the journal\"\n      Unique Values: \"119\"\n      Name: \"src_xref_id\"\n     Description: \"Source X-ref ID\"\n      Unique Values: \"120\"\n      Name: \"journal_name\"\n     Description: \"The name of the journal in which the article is published\"\n      Unique Values: \"49\"\n      Name: \"authors\"\n     Description: \"NA\"\n      Unique Values: \"118\"\n      Name: \"publication_date\"\n     Description: \"Contains the full date on which the issue of the journal was published. Sourced from MEDLINE/PubMed data element(fields) description.\"\n      Unique Values: \"117\"\n      Name: \"glytoucan_ac\"\n     Description: \"Unique accession assigned to the registered glycan structure in GlyTouCan database\"\n      Unique Values: \"115\"\n      Name: \"xref_key\"\n     Description: \"Source key associated to the  xref_id\"\n      Unique Values: \"1\"",
    "downloadurl": "/ln2data/releases/data/v-1.8.24/reviewed/hcv1a_protein_xref_viruspathogenresource.csv"
}