{
    "bcoid": "GLY_000360",
    "title": "HCV1b Protein Alternative Name (UniProtKB)",
    "description": "The Hepatitis C virus (genotype 1b, isolate Japanese) Protein Alternative Name (UniProtKB) dataset contains ...",
    "filename": "hcv1b_protein_altnames.csv",
    "filetype": "csv",
    "categories": {
        "species": "Hepatitis C virus (genotype 1b, isolate Japanese)",
        "molecule": "Protein",
        "tags": "Protein Alternative Names",
        "file_type": "csv",
        "status": "Reviewed",
        "scope": "internal"
    },
    "minitable": {
        "content": [
            [
                "P26662-1...",
                "Non-structur..."
            ],
            [
                "P26662-1...",
                "Viroporin p7..."
            ]
        ],
        "headers": [
            "uniprotkb_ca...",
            "alternative_..."
        ],
        "colwidth": [
            "40%",
            "20%"
        ]
    },
    "sampledata": {
        "type": "table",
        "data": [
            [
                {
                    "type": "string",
                    "label": "uniprotkb_canonical_ac"
                },
                {
                    "type": "string",
                    "label": "alternative_name_full"
                },
                {
                    "type": "string",
                    "label": "alternative_name_short"
                },
                {
                    "type": "string",
                    "label": "ec_name"
                }
            ],
            [
                "P26662-1",
                "Non-structural protein 2",
                "NS2",
                ""
            ],
            [
                "P26662-1",
                "Viroporin p70",
                "",
                ""
            ],
            [
                "P26662-1",
                "NS3 helicase",
                "",
                ""
            ],
            [
                "P26662-1",
                "p56/58",
                "",
                ""
            ],
            [
                "P26662-1",
                "NS3 protease",
                "",
                ""
            ],
            [
                "P26662-1",
                "p23",
                "",
                ""
            ],
            [
                "P26662-1",
                "Hepacivirin",
                "",
                ""
            ],
            [
                "P26662-1",
                "gp68",
                "",
                ""
            ],
            [
                "P26662-1",
                "p27",
                "",
                ""
            ],
            [
                "P26662-1",
                "p8",
                "",
                ""
            ],
            [
                "P26662-1",
                "NS3P",
                "",
                ""
            ],
            [
                "P26662-1",
                "gp35",
                "",
                ""
            ],
            [
                "P26662-1",
                "NS5B",
                "",
                ""
            ],
            [
                "P26662-1",
                "gp32",
                "",
                ""
            ],
            [
                "P26662-1",
                "NS1",
                "",
                ""
            ],
            [
                "P26662-1",
                "p68",
                "",
                ""
            ],
            [
                "P26662-1",
                "Capsid protein C",
                "",
                ""
            ],
            [
                "P26662-1",
                "p21",
                "",
                ""
            ],
            [
                "P26662-1",
                "gp70",
                "",
                ""
            ]
        ]
    },
    "readme": "Name\n   - HCV1b Protein Alternative Name (UniProtKB)\n\nVersion\n   - 1.8.24\n\nCreated on\n  - 2020-03-14T15:10:56.943062\n\nModified on\n   - 2020-04-09T18:04:54.875946\n\nCreated by\n   - Jeet Vora [jeetvora@gwu.edu], Rahi Navelkar [rsn13@gwu.edu], Robel Kahsay [rykahsay@gwu.edu]\n\nAuthors\n   - Maria Martin [martin@ebi.ac.uk], Preethi Vasudev [pvasudev@ebi.ac.uk]\n\nChecksum\n   - \n\nUsability Domain\n   - The Hepatitis C virus (genotype 1b, isolate Japanese) Protein Alternative Name (UniProtKB) dataset contains UniProtKB alternative names for hcv1b [taxid:11116] proteins. The dataset is derived from 2019-09 UniProtKB release. If you use this dataset please provide proper attribution to EMBL-EBI-UniProtKB and GlyGen\n\nDescription Domain\n   Keywords\n   - protein alternative name\n   - UniProtKB\n\n   Pipeline Steps\n   - Step-1: The script loads the UniProtKB alternative names for protein accessions from the triplestore containing triples from nt file and extracts the alternative protein names into csv dataset file\n\nExecution Domain\n   Scripts   - https://github.com/GW-HIVE/glygen-backend-integration/blob/master/pipeline/integrator/make-protein-dataset.py\n\n\n   Software Prerequisites\n      Name: Python\n      Version: 2.7.5\n      URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n   Input Subdomain\n      Name: uniprot-proteome-hepatitis-c-virus-1b.nt\n      URI: https://data.glygen.org/ln2data/releases/data/v-1.8.24/source/uniprot-proteome-hepatitis-c-virus-1b.nt\n      Name: hcv1b_protein_masterlist.csv\n      URI: https://data.glygen.org/ln2data/releases/data/v-1.8.24/reviewed/hcv1b_protein_masterlist.csv\n   Output Subdomain\n      Name: hcv1b_protein_altnames.csv\n      URI: http://data.glygen.org/ln2data/releases/data/v-1.8.24/reviewed/hcv1b_protein_altnames.csv\n      Name: hcv1b_protein_altnames.stat.csv\n      URI: http://data.glygen.org/ln2data/releases/data/v-1.8.24/reviewed/hcv1b_protein_altnames.stat.csv\n\nFields\n      Name: \"src_xref_key\"\n     Description: \"Source Xref  key\"\n      Unique Values: \"1\"\n      Name: \"xref_id\"\n     Description: \"ID of the X-ref\"\n      Unique Values: \"119\"\n      Name: \"title\"\n     Description: \"Title of the published article in the journal\"\n      Unique Values: \"119\"\n      Name: \"src_xref_id\"\n     Description: \"Source X-ref ID\"\n      Unique Values: \"120\"\n      Name: \"journal_name\"\n     Description: \"The name of the journal in which the article is published\"\n      Unique Values: \"49\"\n      Name: \"authors\"\n     Description: \"NA\"\n      Unique Values: \"118\"\n      Name: \"publication_date\"\n     Description: \"Contains the full date on which the issue of the journal was published. Sourced from MEDLINE/PubMed data element(fields) description.\"\n      Unique Values: \"117\"\n      Name: \"glytoucan_ac\"\n     Description: \"Unique accession assigned to the registered glycan structure in GlyTouCan database\"\n      Unique Values: \"115\"\n      Name: \"xref_key\"\n     Description: \"Source key associated to the  xref_id\"\n      Unique Values: \"1\"",
    "downloadurl": "/ln2data/releases/data/v-1.8.24/reviewed/hcv1b_protein_altnames.csv"
}