{ "bcoid": "GLY_000335", "title": "HCV1a Glycosylation Sites (Literature + UniCarbKB)", "description": "The HCV1a [TaxID:1108] glycosylations sites dataset contains glycosylation sites experimentally reported ...", "filename": "hcv1a_proteoform_glycosylation_sites_literature.csv", "filetype": "csv", "categories": { "species": "Hepatitis C virus (genotype 1a, isolate H)", "molecule": "Proteoform", "tags": "Glycosylation Sites", "file_type": "csv", "status": "Reviewed", "scope": "external" }, "minitable": { "content": [ [ "P27958-1...", "448..." ], [ "P27958-1...", "448..." ] ], "headers": [ "uniprotkb_ca...", "glycosylatio..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "uniprotkb_canonical_ac" }, { "type": "string", "label": "glycosylation_site_uniprotkb" }, { "type": "string", "label": "amino_acid" }, { "type": "string", "label": "saccharide" }, { "type": "string", "label": "glycosylation_type" }, { "type": "string", "label": "xref_key" }, { "type": "string", "label": "xref_id" }, { "type": "string", "label": "src_xref_key" }, { "type": "string", "label": "src_xref_id" }, { "type": "string", "label": "uniprotkb_ac" }, { "type": "string", "label": "evidence" }, { "type": "string", "label": "genbank_accession_nucleotide_from_paper" }, { "type": "string", "label": "genbank_accession_nucleotide_version_from_paper" }, { "type": "string", "label": "genbank_accession_protein_version" }, { "type": "string", "label": "protein_name_genbank" }, { "type": "string", "label": "protein_rec_name_uniprot" }, { "type": "string", "label": "tax_id_uniprotkb_ac" }, { "type": "string", "label": "organism" }, { "type": "string", "label": "strain_uniprotkb_ac" }, { "type": "string", "label": "glycosylation_site_in_paper" }, { "type": "string", "label": "link_sugar" }, { "type": "string", "label": "glycan_composition_in_paper" }, { "type": "string", "label": "glycan_composition_format_1" }, { "type": "string", "label": "glycan_composition_format_2" }, { "type": "string", "label": "core_type" }, { "type": "string", "label": "glycoCT" }, { "type": "string", "label": "oxford_notation" }, { "type": "string", "label": "abundance_from_paper" }, { "type": "string", "label": "glycopeptide_sequence" }, { "type": "string", "label": "abundance_normalized" }, { "type": "string", "label": "predominant_glycan_species" }, { "type": "string", "label": "biological_source" }, { "type": "string", "label": "cell_line" }, { "type": "string", "label": "cellosaurus_id" }, { "type": "string", "label": "analyte" }, { "type": "string", "label": "mass_glycopeptide" }, { "type": "string", "label": "chromatography_glycopeptide" }, { "type": "string", "label": "analyzer_glycopeptide" }, { "type": "string", "label": "sample_preparation_glycopeptide" }, { "type": "string", "label": "glycosidase_treatment_glycopeptide" }, { "type": "string", "label": "lectin_characterisation_glycopeptide" }, { "type": "string", "label": "fragmentation_glycopeptide" }, { "type": "string", "label": "ionization_glycopeptide" }, { "type": "string", "label": "notes" }, { "type": "string", "label": "entry_version_uniprot" }, { "type": "string", "label": "entry_modification_date_refseq" }, { "type": "string", "label": "n_sequon" }, { "type": "string", "label": "n_sequon_type" } ], [ "P27958-1", "448", "Asn", "G92050GC", "N-linked", "protein_xref_pubmed", "18187336", "protein_xref_glygen_ds", "GLYDS000335", "", "18187336", "AF009606", "AF009606.1", "AAB66324.1", "polyprotein [Hepatitis C virus subtype 1a]", "Genome polyprotein", "63746", "Hepacivirus C", "Hepatitis C virus subtype 1a (Isolate H)", "66", "GlcNAc", "Man4", "Hex4HexNAc2", "HexNAc2Hex4dHex0NeuAc0NeuGc0Pent0S0P0KDN0HexA0", "High mannose", "", "M4", "0.61", "FNSSGCPER", "14.59", "high mannose glycans", "", "Chinese hamster ovary (CHO) cells", "CVCL_0213", "glycopeptide", "2106.763", "HPLC", "Q-Tof hybrid", "Carboxymethylation | tryptic digest", "", "", "CAD", "MALDI", "The notation ManX, where X ranges from 4 to 9 in the case of the observed tryptic and chymotryptic glycopeptides, indicates that X mannose residues are attached to the chitobiose core (GlcNAc ?(1-4) GlcNAc) | the differences in the number of mannose residues is caused by the slight differences between the E2 glycoprotein batches that were used. The majority of these sites proved to be occupied by high mannose glycans. The relative abundance was determined from deconvoluted mass spectrum over the mass range containing the glycopeptide ions corresponding to glycopeptides with the same amino acid sequence. See glycopeptide sequence reported.", "43509", "39982", "NSS", "NXS" ], [ "P27958-1", "448", "Asn", "G92050GC", "N-linked", "protein_xref_glygen_ds", "GLYDS000335", "protein_xref_glygen_ds", "GLYDS000335", "", "18187336", "AF009606", "AF009606.1", "AAB66324.1", "polyprotein [Hepatitis C virus subtype 1a]", "Genome polyprotein", "63746", "Hepacivirus C", "Hepatitis C virus subtype 1a (Isolate H)", "66", "GlcNAc", "Man4", "Hex4HexNAc2", "HexNAc2Hex4dHex0NeuAc0NeuGc0Pent0S0P0KDN0HexA0", "High mannose", "", "M4", "0.61", "FNSSGCPER", "14.59", "high mannose glycans", "", "Chinese hamster ovary (CHO) cells", "CVCL_0213", "glycopeptide", "2106.763", "HPLC", "Q-Tof hybrid", "Carboxymethylation | tryptic digest", "", "", "CAD", "MALDI", "The notation ManX, where X ranges from 4 to 9 in the case of the observed tryptic and chymotryptic glycopeptides, indicates that X mannose residues are attached to the chitobiose core (GlcNAc ?(1-4) GlcNAc) | the differences in the number of mannose residues is caused by the slight differences between the E2 glycoprotein batches that were used. The majority of these sites proved to be occupied by high mannose glycans. The relative abundance was determined from deconvoluted mass spectrum over the mass range containing the glycopeptide ions corresponding to glycopeptides with the same amino acid sequence. See glycopeptide sequence reported.", "43509", "39982", "NSS", "NXS" ], [ "P27958-1", "448", "Asn", "G92050GC", "N-linked", "protein_xref_unicarbkb", "P27958", "protein_xref_glygen_ds", "GLYDS000335", "", "18187336", "AF009606", "AF009606.1", "AAB66324.1", "polyprotein [Hepatitis C virus subtype 1a]", "Genome polyprotein", "63746", "Hepacivirus C", "Hepatitis C virus subtype 1a (Isolate H)", "66", "GlcNAc", "Man4", "Hex4HexNAc2", "HexNAc2Hex4dHex0NeuAc0NeuGc0Pent0S0P0KDN0HexA0", "High mannose", "", "M4", "0.61", "FNSSGCPER", "14.59", "high mannose glycans", "", "Chinese hamster ovary (CHO) cells", "CVCL_0213", "glycopeptide", "2106.763", "HPLC", "Q-Tof hybrid", "Carboxymethylation | tryptic digest", "", "", "CAD", "MALDI", "The notation ManX, where X ranges from 4 to 9 in the case of the observed tryptic and chymotryptic glycopeptides, indicates that X mannose residues are attached to the chitobiose core (GlcNAc ?(1-4) GlcNAc) | the differences in the number of mannose residues is caused by the slight differences between the E2 glycoprotein batches that were used. The majority of these sites proved to be occupied by high mannose glycans. The relative abundance was determined from deconvoluted mass spectrum over the mass range containing the glycopeptide ions corresponding to glycopeptides with the same amino acid sequence. See glycopeptide sequence reported.", "43509", "39982", "NSS", "NXS" ], [ "P27958-1", "448", "Asn", "G02815KT", "N-linked", "protein_xref_pubmed", "18187336", "protein_xref_glygen_ds", "GLYDS000335", "", "18187336", "AF009606", "AF009606.1", "AAB66324.1", "polyprotein [Hepatitis C virus subtype 1a]", "Genome polyprotein", "63746", "Hepacivirus C", "Hepatitis C virus subtype 1a (Isolate H)", "66", "GlcNAc", "Man5", "Hex5HexNAc2", "HexNAc2Hex5dHex0NeuAc0NeuGc0Pent0S0P0KDN0HexA0", "High mannose", "", "M5", "0.31", "FNSSGCPER", "7.42", "high mannose glycans", "", "Chinese hamster ovary (CHO) cells", "CVCL_0213", "glycopeptide", "2268.8", "HPLC", "Q-Tof hybrid", "Carboxymethylation | tryptic digest", "", "", "CAD", "MALDI", "The notation ManX, where X ranges from 4 to 9 in the case of the observed tryptic and chymotryptic glycopeptides, indicates that X mannose residues are attached to the chitobiose core (GlcNAc ?(1-4) GlcNAc) | the differences in the number of mannose residues is caused by the slight differences between the E2 glycoprotein batches that were used. The majority of these sites proved to be occupied by high mannose glycans. The relative abundance was determined from deconvoluted mass spectrum over the mass range containing the glycopeptide ions corresponding to glycopeptides with the same amino acid sequence. See glycopeptide sequence reported.", "43509", "39982", "NSS", "NXS" ], [ "P27958-1", "448", "Asn", "G02815KT", "N-linked", "protein_xref_glygen_ds", "GLYDS000335", "protein_xref_glygen_ds", "GLYDS000335", "", "18187336", "AF009606", "AF009606.1", "AAB66324.1", "polyprotein [Hepatitis C virus subtype 1a]", "Genome polyprotein", "63746", "Hepacivirus C", "Hepatitis C virus subtype 1a (Isolate H)", "66", "GlcNAc", "Man5", "Hex5HexNAc2", "HexNAc2Hex5dHex0NeuAc0NeuGc0Pent0S0P0KDN0HexA0", "High mannose", "", "M5", "0.31", "FNSSGCPER", "7.42", "high mannose glycans", "", "Chinese hamster ovary (CHO) cells", "CVCL_0213", "glycopeptide", "2268.8", "HPLC", "Q-Tof hybrid", "Carboxymethylation | tryptic digest", "", "", "CAD", "MALDI", "The notation ManX, where X ranges from 4 to 9 in the case of the observed tryptic and chymotryptic glycopeptides, indicates that X mannose residues are attached to the chitobiose core (GlcNAc ?(1-4) GlcNAc) | the differences in the number of mannose residues is caused by the slight differences between the E2 glycoprotein batches that were used. The majority of these sites proved to be occupied by high mannose glycans. The relative abundance was determined from deconvoluted mass spectrum over the mass range containing the glycopeptide ions corresponding to glycopeptides with the same amino acid sequence. See glycopeptide sequence reported.", "43509", "39982", "NSS", "NXS" ], [ "P27958-1", "448", "Asn", "G02815KT", "N-linked", "protein_xref_unicarbkb", "P27958", "protein_xref_glygen_ds", "GLYDS000335", "", "18187336", "AF009606", "AF009606.1", "AAB66324.1", "polyprotein [Hepatitis C virus subtype 1a]", "Genome polyprotein", "63746", "Hepacivirus C", "Hepatitis C virus subtype 1a (Isolate H)", "66", "GlcNAc", "Man5", "Hex5HexNAc2", "HexNAc2Hex5dHex0NeuAc0NeuGc0Pent0S0P0KDN0HexA0", "High mannose", "", "M5", "0.31", "FNSSGCPER", "7.42", "high mannose glycans", "", "Chinese hamster ovary (CHO) cells", "CVCL_0213", "glycopeptide", "2268.8", "HPLC", "Q-Tof hybrid", "Carboxymethylation | tryptic digest", "", "", "CAD", "MALDI", "The notation ManX, where X ranges from 4 to 9 in the case of the observed tryptic and chymotryptic glycopeptides, indicates that X mannose residues are attached to the chitobiose core (GlcNAc ?(1-4) GlcNAc) | the differences in the number of mannose residues is caused by the slight differences between the E2 glycoprotein batches that were used. The majority of these sites proved to be occupied by high mannose glycans. The relative abundance was determined from deconvoluted mass spectrum over the mass range containing the glycopeptide ions corresponding to glycopeptides with the same amino acid sequence. See glycopeptide sequence reported.", "43509", "39982", "NSS", "NXS" ], [ "P27958-1", "448", "Asn", "G41247ZX", "N-linked", "protein_xref_pubmed", "18187336", "protein_xref_glygen_ds", "GLYDS000335", "", "18187336", "AF009606", "AF009606.1", "AAB66324.1", "polyprotein [Hepatitis C virus subtype 1a]", "Genome polyprotein", "63746", "Hepacivirus C", "Hepatitis C virus subtype 1a (Isolate H)", "66", "GlcNAc", "Man6", "Hex6HexNAc2", "HexNAc2Hex6dHex0NeuAc0NeuGc0Pent0S0P0KDN0HexA0", "High mannose", "", "M6", "1", "FNSSGCPER", "23.92", "high mannose glycans", "", "Chinese hamster ovary (CHO) cells", "CVCL_0213", "glycopeptide", "2430.855", "HPLC", "Q-Tof hybrid", "Carboxymethylation | tryptic digest", "", "", "CAD", "MALDI", "The notation ManX, where X ranges from 4 to 9 in the case of the observed tryptic and chymotryptic glycopeptides, indicates that X mannose residues are attached to the chitobiose core (GlcNAc ?(1-4) GlcNAc) | the differences in the number of mannose residues is caused by the slight differences between the E2 glycoprotein batches that were used. The majority of these sites proved to be occupied by high mannose glycans. The relative abundance was determined from deconvoluted mass spectrum over the mass range containing the glycopeptide ions corresponding to glycopeptides with the same amino acid sequence. See glycopeptide sequence reported.", "43509", "39982", "NSS", "NXS" ], [ "P27958-1", "448", "Asn", "G41247ZX", "N-linked", "protein_xref_glygen_ds", "GLYDS000335", "protein_xref_glygen_ds", "GLYDS000335", "", "18187336", "AF009606", "AF009606.1", "AAB66324.1", "polyprotein [Hepatitis C virus subtype 1a]", "Genome polyprotein", "63746", "Hepacivirus C", "Hepatitis C virus subtype 1a (Isolate H)", "66", "GlcNAc", "Man6", "Hex6HexNAc2", "HexNAc2Hex6dHex0NeuAc0NeuGc0Pent0S0P0KDN0HexA0", "High mannose", "", "M6", "1", "FNSSGCPER", "23.92", "high mannose glycans", "", "Chinese hamster ovary (CHO) cells", "CVCL_0213", "glycopeptide", "2430.855", "HPLC", "Q-Tof hybrid", "Carboxymethylation | tryptic digest", "", "", "CAD", "MALDI", "The notation ManX, where X ranges from 4 to 9 in the case of the observed tryptic and chymotryptic glycopeptides, indicates that X mannose residues are attached to the chitobiose core (GlcNAc ?(1-4) GlcNAc) | the differences in the number of mannose residues is caused by the slight differences between the E2 glycoprotein batches that were used. The majority of these sites proved to be occupied by high mannose glycans. The relative abundance was determined from deconvoluted mass spectrum over the mass range containing the glycopeptide ions corresponding to glycopeptides with the same amino acid sequence. See glycopeptide sequence reported.", "43509", "39982", "NSS", "NXS" ], [ "P27958-1", "448", "Asn", "G41247ZX", "N-linked", "protein_xref_unicarbkb", "P27958", "protein_xref_glygen_ds", "GLYDS000335", "", "18187336", "AF009606", "AF009606.1", "AAB66324.1", "polyprotein [Hepatitis C virus subtype 1a]", "Genome polyprotein", "63746", "Hepacivirus C", "Hepatitis C virus subtype 1a (Isolate H)", "66", "GlcNAc", "Man6", "Hex6HexNAc2", "HexNAc2Hex6dHex0NeuAc0NeuGc0Pent0S0P0KDN0HexA0", "High mannose", "", "M6", "1", "FNSSGCPER", "23.92", "high mannose glycans", "", "Chinese hamster ovary (CHO) cells", "CVCL_0213", "glycopeptide", "2430.855", "HPLC", "Q-Tof hybrid", "Carboxymethylation | tryptic digest", "", "", "CAD", "MALDI", "The notation ManX, where X ranges from 4 to 9 in the case of the observed tryptic and chymotryptic glycopeptides, indicates that X mannose residues are attached to the chitobiose core (GlcNAc ?(1-4) GlcNAc) | the differences in the number of mannose residues is caused by the slight differences between the E2 glycoprotein batches that were used. The majority of these sites proved to be occupied by high mannose glycans. The relative abundance was determined from deconvoluted mass spectrum over the mass range containing the glycopeptide ions corresponding to glycopeptides with the same amino acid sequence. See glycopeptide sequence reported.", "43509", "39982", "NSS", "NXS" ], [ "P27958-1", "448", "Asn", "G31852PQ", "N-linked", "protein_xref_pubmed", "18187336", "protein_xref_glygen_ds", "GLYDS000335", "", "18187336", "AF009606", "AF009606.1", "AAB66324.1", "polyprotein [Hepatitis C virus subtype 1a]", "Genome polyprotein", "63746", "Hepacivirus C", "Hepatitis C virus subtype 1a (Isolate H)", "66", "GlcNAc", "Man7", "Hex7HexNAc2", "HexNAc2Hex7dHex0NeuAc0NeuGc0Pent0S0P0KDN0HexA0", "High mannose", "", "M7", "0.57", "FNSSGCPER", "13.64", "high mannose glycans", "", "Chinese hamster ovary (CHO) cells", "CVCL_0213", "glycopeptide", "2592.91", "HPLC", "Q-Tof hybrid", "Carboxymethylation | tryptic digest", "", "", "CAD", "MALDI", "The notation ManX, where X ranges from 4 to 9 in the case of the observed tryptic and chymotryptic glycopeptides, indicates that X mannose residues are attached to the chitobiose core (GlcNAc ?(1-4) GlcNAc) | the differences in the number of mannose residues is caused by the slight differences between the E2 glycoprotein batches that were used. The majority of these sites proved to be occupied by high mannose glycans. The relative abundance was determined from deconvoluted mass spectrum over the mass range containing the glycopeptide ions corresponding to glycopeptides with the same amino acid sequence. See glycopeptide sequence reported.", "43509", "39982", "NSS", "NXS" ], [ "P27958-1", "448", "Asn", "G31852PQ", "N-linked", "protein_xref_glygen_ds", "GLYDS000335", "protein_xref_glygen_ds", "GLYDS000335", "", "18187336", "AF009606", "AF009606.1", "AAB66324.1", "polyprotein [Hepatitis C virus subtype 1a]", "Genome polyprotein", "63746", "Hepacivirus C", "Hepatitis C virus subtype 1a (Isolate H)", "66", "GlcNAc", "Man7", "Hex7HexNAc2", "HexNAc2Hex7dHex0NeuAc0NeuGc0Pent0S0P0KDN0HexA0", "High mannose", "", "M7", "0.57", "FNSSGCPER", "13.64", "high mannose glycans", "", "Chinese hamster ovary (CHO) cells", "CVCL_0213", "glycopeptide", "2592.91", "HPLC", "Q-Tof hybrid", "Carboxymethylation | tryptic digest", "", "", "CAD", "MALDI", "The notation ManX, where X ranges from 4 to 9 in the case of the observed tryptic and chymotryptic glycopeptides, indicates that X mannose residues are attached to the chitobiose core (GlcNAc ?(1-4) GlcNAc) | the differences in the number of mannose residues is caused by the slight differences between the E2 glycoprotein batches that were used. The majority of these sites proved to be occupied by high mannose glycans. The relative abundance was determined from deconvoluted mass spectrum over the mass range containing the glycopeptide ions corresponding to glycopeptides with the same amino acid sequence. See glycopeptide sequence reported.", "43509", "39982", "NSS", "NXS" ], [ "P27958-1", "448", "Asn", "G31852PQ", "N-linked", "protein_xref_unicarbkb", "P27958", "protein_xref_glygen_ds", "GLYDS000335", "", "18187336", "AF009606", "AF009606.1", "AAB66324.1", "polyprotein [Hepatitis C virus subtype 1a]", "Genome polyprotein", "63746", "Hepacivirus C", "Hepatitis C virus subtype 1a (Isolate H)", "66", "GlcNAc", "Man7", "Hex7HexNAc2", "HexNAc2Hex7dHex0NeuAc0NeuGc0Pent0S0P0KDN0HexA0", "High mannose", "", "M7", "0.57", "FNSSGCPER", "13.64", "high mannose glycans", "", "Chinese hamster ovary (CHO) cells", "CVCL_0213", "glycopeptide", "2592.91", "HPLC", "Q-Tof hybrid", "Carboxymethylation | tryptic digest", "", "", "CAD", "MALDI", "The notation ManX, where X ranges from 4 to 9 in the case of the observed tryptic and chymotryptic glycopeptides, indicates that X mannose residues are attached to the chitobiose core (GlcNAc ?(1-4) GlcNAc) | the differences in the number of mannose residues is caused by the slight differences between the E2 glycoprotein batches that were used. The majority of these sites proved to be occupied by high mannose glycans. The relative abundance was determined from deconvoluted mass spectrum over the mass range containing the glycopeptide ions corresponding to glycopeptides with the same amino acid sequence. See glycopeptide sequence reported.", "43509", "39982", "NSS", "NXS" ], [ "P27958-1", "448", "Asn", "G62765YT", "N-linked", "protein_xref_pubmed", "18187336", "protein_xref_glygen_ds", "GLYDS000335", "", "18187336", "AF009606", "AF009606.1", "AAB66324.1", "polyprotein [Hepatitis C virus subtype 1a]", "Genome polyprotein", "63746", "Hepacivirus C", "Hepatitis C virus subtype 1a (Isolate H)", "66", "GlcNAc", "Man8", "Hex8HexNAc2", "HexNAc2Hex8dHex0NeuAc0NeuGc0Pent0S0P0KDN0HexA0", "High mannose", "", "M8", "0.54", "FNSSGCPER", "12.92", "high mannose glycans", "", "Chinese hamster ovary (CHO) cells", "CVCL_0213", "glycopeptide", "2754.98", "HPLC", "Q-Tof hybrid", "Carboxymethylation | tryptic digest", "", "", "CAD", "MALDI", "The notation ManX, where X ranges from 4 to 9 in the case of the observed tryptic and chymotryptic glycopeptides, indicates that X mannose residues are attached to the chitobiose core (GlcNAc ?(1-4) GlcNAc) | the differences in the number of mannose residues is caused by the slight differences between the E2 glycoprotein batches that were used. The majority of these sites proved to be occupied by high mannose glycans. The relative abundance was determined from deconvoluted mass spectrum over the mass range containing the glycopeptide ions corresponding to glycopeptides with the same amino acid sequence. See glycopeptide sequence reported.", "43509", "39982", "NSS", "NXS" ], [ "P27958-1", "448", "Asn", "G62765YT", "N-linked", "protein_xref_glygen_ds", "GLYDS000335", "protein_xref_glygen_ds", "GLYDS000335", "", "18187336", "AF009606", "AF009606.1", "AAB66324.1", "polyprotein [Hepatitis C virus subtype 1a]", "Genome polyprotein", "63746", "Hepacivirus C", "Hepatitis C virus subtype 1a (Isolate H)", "66", "GlcNAc", "Man8", "Hex8HexNAc2", "HexNAc2Hex8dHex0NeuAc0NeuGc0Pent0S0P0KDN0HexA0", "High mannose", "", "M8", "0.54", "FNSSGCPER", "12.92", "high mannose glycans", "", "Chinese hamster ovary (CHO) cells", "CVCL_0213", "glycopeptide", "2754.98", "HPLC", "Q-Tof hybrid", "Carboxymethylation | tryptic digest", "", "", "CAD", "MALDI", "The notation ManX, where X ranges from 4 to 9 in the case of the observed tryptic and chymotryptic glycopeptides, indicates that X mannose residues are attached to the chitobiose core (GlcNAc ?(1-4) GlcNAc) | the differences in the number of mannose residues is caused by the slight differences between the E2 glycoprotein batches that were used. The majority of these sites proved to be occupied by high mannose glycans. The relative abundance was determined from deconvoluted mass spectrum over the mass range containing the glycopeptide ions corresponding to glycopeptides with the same amino acid sequence. See glycopeptide sequence reported.", "43509", "39982", "NSS", "NXS" ], [ "P27958-1", "448", "Asn", "G62765YT", "N-linked", "protein_xref_unicarbkb", "P27958", "protein_xref_glygen_ds", "GLYDS000335", "", "18187336", "AF009606", "AF009606.1", "AAB66324.1", "polyprotein [Hepatitis C virus subtype 1a]", "Genome polyprotein", "63746", "Hepacivirus C", "Hepatitis C virus subtype 1a (Isolate H)", "66", "GlcNAc", "Man8", "Hex8HexNAc2", "HexNAc2Hex8dHex0NeuAc0NeuGc0Pent0S0P0KDN0HexA0", "High mannose", "", "M8", "0.54", "FNSSGCPER", "12.92", "high mannose glycans", "", "Chinese hamster ovary (CHO) cells", "CVCL_0213", "glycopeptide", "2754.98", "HPLC", "Q-Tof hybrid", "Carboxymethylation | tryptic digest", "", "", "CAD", "MALDI", "The notation ManX, where X ranges from 4 to 9 in the case of the observed tryptic and chymotryptic glycopeptides, indicates that X mannose residues are attached to the chitobiose core (GlcNAc ?(1-4) GlcNAc) | the differences in the number of mannose residues is caused by the slight differences between the E2 glycoprotein batches that were used. The majority of these sites proved to be occupied by high mannose glycans. The relative abundance was determined from deconvoluted mass spectrum over the mass range containing the glycopeptide ions corresponding to glycopeptides with the same amino acid sequence. See glycopeptide sequence reported.", "43509", "39982", "NSS", "NXS" ], [ "P27958-1", "448", "Asn", "G80920RR", "N-linked", "protein_xref_pubmed", "18187336", "protein_xref_glygen_ds", "GLYDS000335", "", "18187336", "AF009606", "AF009606.1", "AAB66324.1", "polyprotein [Hepatitis C virus subtype 1a]", "Genome polyprotein", "63746", "Hepacivirus C", "Hepatitis C virus subtype 1a (Isolate H)", "66", "GlcNAc", "Man9", "Hex9HexNAc2", "HexNAc2Hex9dHex0NeuAc0NeuGc0Pent0S0P0KDN0HexA0", "High mannose", "", "M9", "0.42", "FNSSGCPER", "10.05", "high mannose glycans", "", "Chinese hamster ovary (CHO) cells", "CVCL_0213", "glycopeptide", "2917.015", "HPLC", "Q-Tof hybrid", "Carboxymethylation | tryptic digest", "", "", "CAD", "MALDI", "The notation ManX, where X ranges from 4 to 9 in the case of the observed tryptic and chymotryptic glycopeptides, indicates that X mannose residues are attached to the chitobiose core (GlcNAc ?(1-4) GlcNAc) | the differences in the number of mannose residues is caused by the slight differences between the E2 glycoprotein batches that were used. The majority of these sites proved to be occupied by high mannose glycans. The relative abundance was determined from deconvoluted mass spectrum over the mass range containing the glycopeptide ions corresponding to glycopeptides with the same amino acid sequence. See glycopeptide sequence reported.", "43509", "39982", "NSS", "NXS" ], [ "P27958-1", "448", "Asn", "G80920RR", "N-linked", "protein_xref_glygen_ds", "GLYDS000335", "protein_xref_glygen_ds", "GLYDS000335", "", "18187336", "AF009606", "AF009606.1", "AAB66324.1", "polyprotein [Hepatitis C virus subtype 1a]", "Genome polyprotein", "63746", "Hepacivirus C", "Hepatitis C virus subtype 1a (Isolate H)", "66", "GlcNAc", "Man9", "Hex9HexNAc2", "HexNAc2Hex9dHex0NeuAc0NeuGc0Pent0S0P0KDN0HexA0", "High mannose", "", "M9", "0.42", "FNSSGCPER", "10.05", "high mannose glycans", "", "Chinese hamster ovary (CHO) cells", "CVCL_0213", "glycopeptide", "2917.015", "HPLC", "Q-Tof hybrid", "Carboxymethylation | tryptic digest", "", "", "CAD", "MALDI", "The notation ManX, where X ranges from 4 to 9 in the case of the observed tryptic and chymotryptic glycopeptides, indicates that X mannose residues are attached to the chitobiose core (GlcNAc ?(1-4) GlcNAc) | the differences in the number of mannose residues is caused by the slight differences between the E2 glycoprotein batches that were used. The majority of these sites proved to be occupied by high mannose glycans. The relative abundance was determined from deconvoluted mass spectrum over the mass range containing the glycopeptide ions corresponding to glycopeptides with the same amino acid sequence. See glycopeptide sequence reported.", "43509", "39982", "NSS", "NXS" ], [ "P27958-1", "448", "Asn", "G80920RR", "N-linked", "protein_xref_unicarbkb", "P27958", "protein_xref_glygen_ds", "GLYDS000335", "", "18187336", "AF009606", "AF009606.1", "AAB66324.1", "polyprotein [Hepatitis C virus subtype 1a]", "Genome polyprotein", "63746", "Hepacivirus C", "Hepatitis C virus subtype 1a (Isolate H)", "66", "GlcNAc", "Man9", "Hex9HexNAc2", "HexNAc2Hex9dHex0NeuAc0NeuGc0Pent0S0P0KDN0HexA0", "High mannose", "", "M9", "0.42", "FNSSGCPER", "10.05", "high mannose glycans", "", "Chinese hamster ovary (CHO) cells", "CVCL_0213", "glycopeptide", "2917.015", "HPLC", "Q-Tof hybrid", "Carboxymethylation | tryptic digest", "", "", "CAD", "MALDI", "The notation ManX, where X ranges from 4 to 9 in the case of the observed tryptic and chymotryptic glycopeptides, indicates that X mannose residues are attached to the chitobiose core (GlcNAc ?(1-4) GlcNAc) | the differences in the number of mannose residues is caused by the slight differences between the E2 glycoprotein batches that were used. The majority of these sites proved to be occupied by high mannose glycans. The relative abundance was determined from deconvoluted mass spectrum over the mass range containing the glycopeptide ions corresponding to glycopeptides with the same amino acid sequence. See glycopeptide sequence reported.", "43509", "39982", "NSS", "NXS" ], [ "P27958-1", "448", "Asn", "G83460ZZ", "N-linked", "protein_xref_pubmed", "18187336", "protein_xref_glygen_ds", "GLYDS000335", "", "18187336", "AF009606", "AF009606.1", "AAB66324.1", "polyprotein [Hepatitis C virus subtype 1a]", "Genome polyprotein", "63746", "Hepacivirus C", "Hepatitis C virus subtype 1a (Isolate H)", "66", "GlcNAc", "Hex1Man9", "Hex10HexNAc2", "HexNAc2Hex10dHex0NeuAc0NeuGc0Pent0S0P0KDN0HexA0", "High mannose", "", "M9Glc1", "0.38", "FNSSGCPER", "9.09", "high mannose glycans", "", "Chinese hamster ovary (CHO) cells", "CVCL_0213", "glycopeptide", "3079.045", "HPLC", "Q-Tof hybrid", "Carboxymethylation | tryptic digest", "", "", "CAD", "MALDI", "The notation ManX, where X ranges from 4 to 9 in the case of the observed tryptic and chymotryptic glycopeptides, indicates that X mannose residues are attached to the chitobiose core (GlcNAc ?(1-4) GlcNAc) | the differences in the number of mannose residues is caused by the slight differences between the E2 glycoprotein batches that were used. The majority of these sites proved to be occupied by high mannose glycans. The relative abundance was determined from deconvoluted mass spectrum over the mass range containing the glycopeptide ions corresponding to glycopeptides with the same amino acid sequence. See glycopeptide sequence reported.", "43509", "39982", "NSS", "NXS" ], [ "P27958-1", "448", "Asn", "G83460ZZ", "N-linked", "protein_xref_glygen_ds", "GLYDS000335", "protein_xref_glygen_ds", "GLYDS000335", "", "18187336", "AF009606", "AF009606.1", "AAB66324.1", "polyprotein [Hepatitis C virus subtype 1a]", "Genome polyprotein", "63746", "Hepacivirus C", "Hepatitis C virus subtype 1a (Isolate H)", "66", "GlcNAc", "Hex1Man9", "Hex10HexNAc2", "HexNAc2Hex10dHex0NeuAc0NeuGc0Pent0S0P0KDN0HexA0", "High mannose", "", "M9Glc1", "0.38", "FNSSGCPER", "9.09", "high mannose glycans", "", "Chinese hamster ovary (CHO) cells", "CVCL_0213", "glycopeptide", "3079.045", "HPLC", "Q-Tof hybrid", "Carboxymethylation | tryptic digest", "", "", "CAD", "MALDI", "The notation ManX, where X ranges from 4 to 9 in the case of the observed tryptic and chymotryptic glycopeptides, indicates that X mannose residues are attached to the chitobiose core (GlcNAc ?(1-4) GlcNAc) | the differences in the number of mannose residues is caused by the slight differences between the E2 glycoprotein batches that were used. The majority of these sites proved to be occupied by high mannose glycans. The relative abundance was determined from deconvoluted mass spectrum over the mass range containing the glycopeptide ions corresponding to glycopeptides with the same amino acid sequence. See glycopeptide sequence reported.", "43509", "39982", "NSS", "NXS" ], [ "P27958-1", "448", "Asn", "G83460ZZ", "N-linked", "protein_xref_unicarbkb", "P27958", "protein_xref_glygen_ds", "GLYDS000335", "", "18187336", "AF009606", "AF009606.1", "AAB66324.1", "polyprotein [Hepatitis C virus subtype 1a]", "Genome polyprotein", "63746", "Hepacivirus C", "Hepatitis C virus subtype 1a (Isolate H)", "66", "GlcNAc", "Hex1Man9", "Hex10HexNAc2", "HexNAc2Hex10dHex0NeuAc0NeuGc0Pent0S0P0KDN0HexA0", "High mannose", "", "M9Glc1", "0.38", "FNSSGCPER", "9.09", "high mannose glycans", "", "Chinese hamster ovary (CHO) cells", "CVCL_0213", "glycopeptide", "3079.045", "HPLC", "Q-Tof hybrid", "Carboxymethylation | tryptic digest", "", "", "CAD", "MALDI", "The notation ManX, where X ranges from 4 to 9 in the case of the observed tryptic and chymotryptic glycopeptides, indicates that X mannose residues are attached to the chitobiose core (GlcNAc ?(1-4) GlcNAc) | the differences in the number of mannose residues is caused by the slight differences between the E2 glycoprotein batches that were used. The majority of these sites proved to be occupied by high mannose glycans. The relative abundance was determined from deconvoluted mass spectrum over the mass range containing the glycopeptide ions corresponding to glycopeptides with the same amino acid sequence. See glycopeptide sequence reported.", "43509", "39982", "NSS", "NXS" ], [ "P27958-1", "448", "Asn", "G58087IP", "N-linked", "protein_xref_pubmed", "18187336", "protein_xref_glygen_ds", "GLYDS000335", "", "18187336", "AF009606", "AF009606.1", "AAB66324.1", "polyprotein [Hepatitis C virus subtype 1a]", "Genome polyprotein", "63746", "Hepacivirus C", "Hepatitis C virus subtype 1a (Isolate H)", "66", "GlcNAc", "Hex2Man9", "Hex11HexNAc2", "HexNAc2Hex11dHex0NeuAc0NeuGc0Pent0S0P0KDN0HexA0", "High mannose", "", "M9Glc2", "0.2", "FNSSGCPER", "4.78", "high mannose glycans", "", "Chinese hamster ovary (CHO) cells", "CVCL_0213", "glycopeptide", "3241.115", "HPLC", "Q-Tof hybrid", "Carboxymethylation | tryptic digest", "", "", "CAD", "MALDI", "The notation ManX, where X ranges from 4 to 9 in the case of the observed tryptic and chymotryptic glycopeptides, indicates that X mannose residues are attached to the chitobiose core (GlcNAc ?(1-4) GlcNAc) | the differences in the number of mannose residues is caused by the slight differences between the E2 glycoprotein batches that were used. The majority of these sites proved to be occupied by high mannose glycans. The relative abundance was determined from deconvoluted mass spectrum over the mass range containing the glycopeptide ions corresponding to glycopeptides with the same amino acid sequence. See glycopeptide sequence reported.", "43509", "39982", "NSS", "NXS" ], [ "P27958-1", "448", "Asn", "G58087IP", "N-linked", "protein_xref_glygen_ds", "GLYDS000335", "protein_xref_glygen_ds", "GLYDS000335", "", "18187336", "AF009606", "AF009606.1", "AAB66324.1", "polyprotein [Hepatitis C virus subtype 1a]", "Genome polyprotein", "63746", "Hepacivirus C", "Hepatitis C virus subtype 1a (Isolate H)", "66", "GlcNAc", "Hex2Man9", "Hex11HexNAc2", "HexNAc2Hex11dHex0NeuAc0NeuGc0Pent0S0P0KDN0HexA0", "High mannose", "", "M9Glc2", "0.2", "FNSSGCPER", "4.78", "high mannose glycans", "", "Chinese hamster ovary (CHO) cells", "CVCL_0213", "glycopeptide", "3241.115", "HPLC", "Q-Tof hybrid", "Carboxymethylation | tryptic digest", "", "", "CAD", "MALDI", "The notation ManX, where X ranges from 4 to 9 in the case of the observed tryptic and chymotryptic glycopeptides, indicates that X mannose residues are attached to the chitobiose core (GlcNAc ?(1-4) GlcNAc) | the differences in the number of mannose residues is caused by the slight differences between the E2 glycoprotein batches that were used. The majority of these sites proved to be occupied by high mannose glycans. The relative abundance was determined from deconvoluted mass spectrum over the mass range containing the glycopeptide ions corresponding to glycopeptides with the same amino acid sequence. See glycopeptide sequence reported.", "43509", "39982", "NSS", "NXS" ], [ "P27958-1", "448", "Asn", "G58087IP", "N-linked", "protein_xref_unicarbkb", "P27958", "protein_xref_glygen_ds", "GLYDS000335", "", "18187336", "AF009606", "AF009606.1", "AAB66324.1", "polyprotein [Hepatitis C virus subtype 1a]", "Genome polyprotein", "63746", "Hepacivirus C", "Hepatitis C virus subtype 1a (Isolate H)", "66", "GlcNAc", "Hex2Man9", "Hex11HexNAc2", "HexNAc2Hex11dHex0NeuAc0NeuGc0Pent0S0P0KDN0HexA0", "High mannose", "", "M9Glc2", "0.2", "FNSSGCPER", "4.78", "high mannose glycans", "", "Chinese hamster ovary (CHO) cells", "CVCL_0213", "glycopeptide", "3241.115", "HPLC", "Q-Tof hybrid", "Carboxymethylation | tryptic digest", "", "", "CAD", "MALDI", "The notation ManX, where X ranges from 4 to 9 in the case of the observed tryptic and chymotryptic glycopeptides, indicates that X mannose residues are attached to the chitobiose core (GlcNAc ?(1-4) GlcNAc) | the differences in the number of mannose residues is caused by the slight differences between the E2 glycoprotein batches that were used. The majority of these sites proved to be occupied by high mannose glycans. The relative abundance was determined from deconvoluted mass spectrum over the mass range containing the glycopeptide ions corresponding to glycopeptides with the same amino acid sequence. See glycopeptide sequence reported.", "43509", "39982", "NSS", "NXS" ], [ "P27958-1", "448", "Asn", "G59324HL", "N-linked", "protein_xref_pubmed", "18187336", "protein_xref_glygen_ds", "GLYDS000335", "", "18187336", "AF009606", "AF009606.1", "AAB66324.1", "polyprotein [Hepatitis C virus subtype 1a]", "Genome polyprotein", "63746", "Hepacivirus C", "Hepatitis C virus subtype 1a (Isolate H)", "66", "GlcNAc", "Hex3Man9", "Hex12HexNAc2", "HexNAc2Hex12dHex0NeuAc0NeuGc0Pent0S0P0KDN0HexA0", "High mannose", "", "M9Glc3", "0.15", "FNSSGCPER", "3.59", "high mannose glycans", "", "Chinese hamster ovary (CHO) cells", "CVCL_0213", "glycopeptide", "3403.181", "HPLC", "Q-Tof hybrid", "Carboxymethylation | tryptic digest", "", "", "CAD", "MALDI", "The notation ManX, where X ranges from 4 to 9 in the case of the observed tryptic and chymotryptic glycopeptides, indicates that X mannose residues are attached to the chitobiose core (GlcNAc ?(1-4) GlcNAc) | the differences in the number of mannose residues is caused by the slight differences between the E2 glycoprotein batches that were used. The majority of these sites proved to be occupied by high mannose glycans. The relative abundance was determined from deconvoluted mass spectrum over the mass range containing the glycopeptide ions corresponding to glycopeptides with the same amino acid sequence. See glycopeptide sequence reported.", "43509", "39982", "NSS", "NXS" ], [ "P27958-1", "448", "Asn", "G59324HL", "N-linked", "protein_xref_glygen_ds", "GLYDS000335", "protein_xref_glygen_ds", "GLYDS000335", "", "18187336", "AF009606", "AF009606.1", "AAB66324.1", "polyprotein [Hepatitis C virus subtype 1a]", "Genome polyprotein", "63746", "Hepacivirus C", "Hepatitis C virus subtype 1a (Isolate H)", "66", "GlcNAc", "Hex3Man9", "Hex12HexNAc2", "HexNAc2Hex12dHex0NeuAc0NeuGc0Pent0S0P0KDN0HexA0", "High mannose", "", "M9Glc3", "0.15", "FNSSGCPER", "3.59", "high mannose glycans", "", "Chinese hamster ovary (CHO) cells", "CVCL_0213", "glycopeptide", "3403.181", "HPLC", "Q-Tof hybrid", "Carboxymethylation | tryptic digest", "", "", "CAD", "MALDI", "The notation ManX, where X ranges from 4 to 9 in the case of the observed tryptic and chymotryptic glycopeptides, indicates that X mannose residues are attached to the chitobiose core (GlcNAc ?(1-4) GlcNAc) | the differences in the number of mannose residues is caused by the slight differences between the E2 glycoprotein batches that were used. The majority of these sites proved to be occupied by high mannose glycans. The relative abundance was determined from deconvoluted mass spectrum over the mass range containing the glycopeptide ions corresponding to glycopeptides with the same amino acid sequence. See glycopeptide sequence reported.", "43509", "39982", "NSS", "NXS" ], [ "P27958-1", "448", "Asn", "G59324HL", "N-linked", "protein_xref_unicarbkb", "P27958", "protein_xref_glygen_ds", "GLYDS000335", "", "18187336", "AF009606", "AF009606.1", "AAB66324.1", "polyprotein [Hepatitis C virus subtype 1a]", "Genome polyprotein", "63746", "Hepacivirus C", "Hepatitis C virus subtype 1a (Isolate H)", "66", "GlcNAc", "Hex3Man9", "Hex12HexNAc2", "HexNAc2Hex12dHex0NeuAc0NeuGc0Pent0S0P0KDN0HexA0", "High mannose", "", "M9Glc3", "0.15", "FNSSGCPER", "3.59", "high mannose glycans", "", "Chinese hamster ovary (CHO) cells", "CVCL_0213", "glycopeptide", "3403.181", "HPLC", "Q-Tof hybrid", "Carboxymethylation | tryptic digest", "", "", "CAD", "MALDI", "The notation ManX, where X ranges from 4 to 9 in the case of the observed tryptic and chymotryptic glycopeptides, indicates that X mannose residues are attached to the chitobiose core (GlcNAc ?(1-4) GlcNAc) | the differences in the number of mannose residues is caused by the slight differences between the E2 glycoprotein batches that were used. The majority of these sites proved to be occupied by high mannose glycans. The relative abundance was determined from deconvoluted mass spectrum over the mass range containing the glycopeptide ions corresponding to glycopeptides with the same amino acid sequence. See glycopeptide sequence reported.", "43509", "39982", "NSS", "NXS" ], [ "P27958-1", "576", "Asn", "G31852PQ", "N-linked", "protein_xref_pubmed", "18187336", "protein_xref_glygen_ds", "GLYDS000335", "", "18187336", "AF009606", "AF009606.1", "AAB66324.1", "polyprotein [Hepatitis C virus subtype 1a]", "Genome polyprotein", "63746", "Hepacivirus C", "Hepatitis C virus subtype 1a (Isolate H)", "194", "GlcNAc", "Man7", "Hex7HexNAc2", "HexNAc2Hex7dHex0NeuAc0NeuGc0Pent0S0P0KDN0HexA0", "High mannose", "", "M7", "0.6", "VCGAPPCVIGGVGNNTLLCPTDCFRK", "29.41", "high mannose glycans", "", "Chinese hamster ovary (CHO) cells", "CVCL_0213", "glycopeptide", "4401.825", "HPLC", "Q-Tof hybrid", "Carboxymethylation | tryptic digest", "", "", "CAD", "MALDI", "The notation ManX, where X ranges from 4 to 9 in the case of the observed tryptic and chymotryptic glycopeptides, indicates that X mannose residues are attached to the chitobiose core (GlcNAc ?(1-4) GlcNAc) | the differences in the number of mannose residues is caused by the slight differences between the E2 glycoprotein batches that were used. The majority of these sites proved to be occupied by high mannose glycans. The relative abundance was determined from deconvoluted mass spectrum over the mass range containing the glycopeptide ions corresponding to glycopeptides with the same amino acid sequence. See glycopeptide sequence reported.", "43509", "39982", "NNT", "NXT" ], [ "P27958-1", "576", "Asn", "G31852PQ", "N-linked", "protein_xref_glygen_ds", "GLYDS000335", "protein_xref_glygen_ds", "GLYDS000335", "", "18187336", "AF009606", "AF009606.1", "AAB66324.1", "polyprotein [Hepatitis C virus subtype 1a]", "Genome polyprotein", "63746", "Hepacivirus C", "Hepatitis C virus subtype 1a (Isolate H)", "194", "GlcNAc", "Man7", "Hex7HexNAc2", "HexNAc2Hex7dHex0NeuAc0NeuGc0Pent0S0P0KDN0HexA0", "High mannose", "", "M7", "0.6", "VCGAPPCVIGGVGNNTLLCPTDCFRK", "29.41", "high mannose glycans", "", "Chinese hamster ovary (CHO) cells", "CVCL_0213", "glycopeptide", "4401.825", "HPLC", "Q-Tof hybrid", "Carboxymethylation | tryptic digest", "", "", "CAD", "MALDI", "The notation ManX, where X ranges from 4 to 9 in the case of the observed tryptic and chymotryptic glycopeptides, indicates that X mannose residues are attached to the chitobiose core (GlcNAc ?(1-4) GlcNAc) | the differences in the number of mannose residues is caused by the slight differences between the E2 glycoprotein batches that were used. The majority of these sites proved to be occupied by high mannose glycans. The relative abundance was determined from deconvoluted mass spectrum over the mass range containing the glycopeptide ions corresponding to glycopeptides with the same amino acid sequence. See glycopeptide sequence reported.", "43509", "39982", "NNT", "NXT" ], [ "P27958-1", "576", "Asn", "G31852PQ", "N-linked", "protein_xref_unicarbkb", "P27958", "protein_xref_glygen_ds", "GLYDS000335", "", "18187336", "AF009606", "AF009606.1", "AAB66324.1", "polyprotein [Hepatitis C virus subtype 1a]", "Genome polyprotein", "63746", "Hepacivirus C", "Hepatitis C virus subtype 1a (Isolate H)", "194", "GlcNAc", "Man7", "Hex7HexNAc2", "HexNAc2Hex7dHex0NeuAc0NeuGc0Pent0S0P0KDN0HexA0", "High mannose", "", "M7", "0.6", "VCGAPPCVIGGVGNNTLLCPTDCFRK", "29.41", "high mannose glycans", "", "Chinese hamster ovary (CHO) cells", "CVCL_0213", "glycopeptide", "4401.825", "HPLC", "Q-Tof hybrid", "Carboxymethylation | tryptic digest", "", "", "CAD", "MALDI", "The notation ManX, where X ranges from 4 to 9 in the case of the observed tryptic and chymotryptic glycopeptides, indicates that X mannose residues are attached to the chitobiose core (GlcNAc ?(1-4) GlcNAc) | the differences in the number of mannose residues is caused by the slight differences between the E2 glycoprotein batches that were used. The majority of these sites proved to be occupied by high mannose glycans. The relative abundance was determined from deconvoluted mass spectrum over the mass range containing the glycopeptide ions corresponding to glycopeptides with the same amino acid sequence. See glycopeptide sequence reported.", "43509", "39982", "NNT", "NXT" ], [ "P27958-1", "576", "Asn", "G62765YT", "N-linked", "protein_xref_pubmed", "18187336", "protein_xref_glygen_ds", "GLYDS000335", "", "18187336", "AF009606", "AF009606.1", "AAB66324.1", "polyprotein [Hepatitis C virus subtype 1a]", "Genome polyprotein", "63746", "Hepacivirus C", "Hepatitis C virus subtype 1a (Isolate H)", "194", "GlcNAc", "Man8", "Hex8HexNAc2", "HexNAc2Hex8dHex0NeuAc0NeuGc0Pent0S0P0KDN0HexA0", "High mannose", "", "M8", "1", "VCGAPPCVIGGVGNNTLLCPTDCFRK", "49.02", "high mannose glycans", "", "Chinese hamster ovary (CHO) cells", "CVCL_0213", "glycopeptide", "4563.867", "HPLC", "Q-Tof hybrid", "Carboxymethylation | tryptic digest", "", "", "CAD", "MALDI", "The notation ManX, where X ranges from 4 to 9 in the case of the observed tryptic and chymotryptic glycopeptides, indicates that X mannose residues are attached to the chitobiose core (GlcNAc ?(1-4) GlcNAc) | the differences in the number of mannose residues is caused by the slight differences between the E2 glycoprotein batches that were used. The majority of these sites proved to be occupied by high mannose glycans. The relative abundance was determined from deconvoluted mass spectrum over the mass range containing the glycopeptide ions corresponding to glycopeptides with the same amino acid sequence. See glycopeptide sequence reported.", "43509", "39982", "NNT", "NXT" ], [ "P27958-1", "576", "Asn", "G62765YT", "N-linked", "protein_xref_glygen_ds", "GLYDS000335", "protein_xref_glygen_ds", "GLYDS000335", "", "18187336", "AF009606", "AF009606.1", "AAB66324.1", "polyprotein [Hepatitis C virus subtype 1a]", "Genome polyprotein", "63746", "Hepacivirus C", "Hepatitis C virus subtype 1a (Isolate H)", "194", "GlcNAc", "Man8", "Hex8HexNAc2", "HexNAc2Hex8dHex0NeuAc0NeuGc0Pent0S0P0KDN0HexA0", "High mannose", "", "M8", "1", "VCGAPPCVIGGVGNNTLLCPTDCFRK", "49.02", "high mannose glycans", "", "Chinese hamster ovary (CHO) cells", "CVCL_0213", "glycopeptide", "4563.867", "HPLC", "Q-Tof hybrid", "Carboxymethylation | tryptic digest", "", "", "CAD", "MALDI", "The notation ManX, where X ranges from 4 to 9 in the case of the observed tryptic and chymotryptic glycopeptides, indicates that X mannose residues are attached to the chitobiose core (GlcNAc ?(1-4) GlcNAc) | the differences in the number of mannose residues is caused by the slight differences between the E2 glycoprotein batches that were used. The majority of these sites proved to be occupied by high mannose glycans. The relative abundance was determined from deconvoluted mass spectrum over the mass range containing the glycopeptide ions corresponding to glycopeptides with the same amino acid sequence. See glycopeptide sequence reported.", "43509", "39982", "NNT", "NXT" ], [ "P27958-1", "576", "Asn", "G62765YT", "N-linked", "protein_xref_unicarbkb", "P27958", "protein_xref_glygen_ds", "GLYDS000335", "", "18187336", "AF009606", "AF009606.1", "AAB66324.1", "polyprotein [Hepatitis C virus subtype 1a]", "Genome polyprotein", "63746", "Hepacivirus C", "Hepatitis C virus subtype 1a (Isolate H)", "194", "GlcNAc", "Man8", "Hex8HexNAc2", "HexNAc2Hex8dHex0NeuAc0NeuGc0Pent0S0P0KDN0HexA0", "High mannose", "", "M8", "1", "VCGAPPCVIGGVGNNTLLCPTDCFRK", "49.02", "high mannose glycans", "", "Chinese hamster ovary (CHO) cells", "CVCL_0213", "glycopeptide", "4563.867", "HPLC", "Q-Tof hybrid", "Carboxymethylation | tryptic digest", "", "", "CAD", "MALDI", "The notation ManX, where X ranges from 4 to 9 in the case of the observed tryptic and chymotryptic glycopeptides, indicates that X mannose residues are attached to the chitobiose core (GlcNAc ?(1-4) GlcNAc) | the differences in the number of mannose residues is caused by the slight differences between the E2 glycoprotein batches that were used. The majority of these sites proved to be occupied by high mannose glycans. The relative abundance was determined from deconvoluted mass spectrum over the mass range containing the glycopeptide ions corresponding to glycopeptides with the same amino acid sequence. See glycopeptide sequence reported.", "43509", "39982", "NNT", "NXT" ], [ "P27958-1", "576", "Asn", "G80920RR", "N-linked", "protein_xref_pubmed", "18187336", "protein_xref_glygen_ds", "GLYDS000335", "", "18187336", "AF009606", "AF009606.1", "AAB66324.1", "polyprotein [Hepatitis C virus subtype 1a]", "Genome polyprotein", "63746", "Hepacivirus C", "Hepatitis C virus subtype 1a (Isolate H)", "194", "GlcNAc", "Man9", "Hex9HexNAc2", "HexNAc2Hex9dHex0NeuAc0NeuGc0Pent0S0P0KDN0HexA0", "High mannose", "", "M9", "0.44", "VCGAPPCVIGGVGNNTLLCPTDCFRK", "21.57", "high mannose glycans", "", "Chinese hamster ovary (CHO) cells", "CVCL_0213", "glycopeptide", "4725.93", "HPLC", "Q-Tof hybrid", "Carboxymethylation | tryptic digest", "", "", "CAD", "MALDI", "The notation ManX, where X ranges from 4 to 9 in the case of the observed tryptic and chymotryptic glycopeptides, indicates that X mannose residues are attached to the chitobiose core (GlcNAc ?(1-4) GlcNAc) | the differences in the number of mannose residues is caused by the slight differences between the E2 glycoprotein batches that were used. The majority of these sites proved to be occupied by high mannose glycans. The relative abundance was determined from deconvoluted mass spectrum over the mass range containing the glycopeptide ions corresponding to glycopeptides with the same amino acid sequence. See glycopeptide sequence reported.", "43509", "39982", "NNT", "NXT" ], [ "P27958-1", "576", "Asn", "G80920RR", "N-linked", "protein_xref_glygen_ds", "GLYDS000335", "protein_xref_glygen_ds", "GLYDS000335", "", "18187336", "AF009606", "AF009606.1", "AAB66324.1", "polyprotein [Hepatitis C virus subtype 1a]", "Genome polyprotein", "63746", "Hepacivirus C", "Hepatitis C virus subtype 1a (Isolate H)", "194", "GlcNAc", "Man9", "Hex9HexNAc2", "HexNAc2Hex9dHex0NeuAc0NeuGc0Pent0S0P0KDN0HexA0", "High mannose", "", "M9", "0.44", "VCGAPPCVIGGVGNNTLLCPTDCFRK", "21.57", "high mannose glycans", "", "Chinese hamster ovary (CHO) cells", "CVCL_0213", "glycopeptide", "4725.93", "HPLC", "Q-Tof hybrid", "Carboxymethylation | tryptic digest", "", "", "CAD", "MALDI", "The notation ManX, where X ranges from 4 to 9 in the case of the observed tryptic and chymotryptic glycopeptides, indicates that X mannose residues are attached to the chitobiose core (GlcNAc ?(1-4) GlcNAc) | the differences in the number of mannose residues is caused by the slight differences between the E2 glycoprotein batches that were used. The majority of these sites proved to be occupied by high mannose glycans. The relative abundance was determined from deconvoluted mass spectrum over the mass range containing the glycopeptide ions corresponding to glycopeptides with the same amino acid sequence. See glycopeptide sequence reported.", "43509", "39982", "NNT", "NXT" ], [ "P27958-1", "576", "Asn", "G80920RR", "N-linked", "protein_xref_unicarbkb", "P27958", "protein_xref_glygen_ds", "GLYDS000335", "", "18187336", "AF009606", "AF009606.1", "AAB66324.1", "polyprotein [Hepatitis C virus subtype 1a]", "Genome polyprotein", "63746", "Hepacivirus C", "Hepatitis C virus subtype 1a (Isolate H)", "194", "GlcNAc", "Man9", "Hex9HexNAc2", "HexNAc2Hex9dHex0NeuAc0NeuGc0Pent0S0P0KDN0HexA0", "High mannose", "", "M9", "0.44", "VCGAPPCVIGGVGNNTLLCPTDCFRK", "21.57", "high mannose glycans", "", "Chinese hamster ovary (CHO) cells", "CVCL_0213", "glycopeptide", "4725.93", "HPLC", "Q-Tof hybrid", "Carboxymethylation | tryptic digest", "", "", "CAD", "MALDI", "The notation ManX, where X ranges from 4 to 9 in the case of the observed tryptic and chymotryptic glycopeptides, indicates that X mannose residues are attached to the chitobiose core (GlcNAc ?(1-4) GlcNAc) | the differences in the number of mannose residues is caused by the slight differences between the E2 glycoprotein batches that were used. The majority of these sites proved to be occupied by high mannose glycans. The relative abundance was determined from deconvoluted mass spectrum over the mass range containing the glycopeptide ions corresponding to glycopeptides with the same amino acid sequence. See glycopeptide sequence reported.", "43509", "39982", "NNT", "NXT" ], [ "P27958-1", "623", "Asn", "G02815KT", "N-linked", "protein_xref_pubmed", "18187336", "protein_xref_glygen_ds", "GLYDS000335", "", "18187336", "AF009606", "AF009606.1", "AAB66324.1", "polyprotein [Hepatitis C virus subtype 1a]", "Genome polyprotein", "63746", "Hepacivirus C", "Hepatitis C virus subtype 1a (Isolate H)", "241", "GlcNAc", "Man5", "Hex5HexNAc2", "HexNAc2Hex5dHex0NeuAc0NeuGc0Pent0S0P0KDN0HexA0", "High mannose", "", "M5", "0.54", "LWHYPCTINYTIFK", "11.49", "high mannose glycans", "", "Chinese hamster ovary (CHO) cells", "CVCL_0213", "glycopeptide", "3071.46", "HPLC", "Q-Tof hybrid", "Carboxymethylation | tryptic digest", "", "", "CAD", "MALDI", "The notation ManX, where X ranges from 4 to 9 in the case of the observed tryptic and chymotryptic glycopeptides, indicates that X mannose residues are attached to the chitobiose core (GlcNAc ?(1-4) GlcNAc) | the differences in the number of mannose residues is caused by the slight differences between the E2 glycoprotein batches that were used. The majority of these sites proved to be occupied by high mannose glycans. The relative abundance was determined from deconvoluted mass spectrum over the mass range containing the glycopeptide ions corresponding to glycopeptides with the same amino acid sequence. See glycopeptide sequence reported.", "43509", "39982", "NYT", "NXT" ], [ "P27958-1", "623", "Asn", "G02815KT", "N-linked", "protein_xref_glygen_ds", "GLYDS000335", "protein_xref_glygen_ds", "GLYDS000335", "", "18187336", "AF009606", "AF009606.1", "AAB66324.1", "polyprotein [Hepatitis C virus subtype 1a]", "Genome polyprotein", "63746", "Hepacivirus C", "Hepatitis C virus subtype 1a (Isolate H)", "241", "GlcNAc", "Man5", "Hex5HexNAc2", "HexNAc2Hex5dHex0NeuAc0NeuGc0Pent0S0P0KDN0HexA0", "High mannose", "", "M5", "0.54", "LWHYPCTINYTIFK", "11.49", "high mannose glycans", "", "Chinese hamster ovary (CHO) cells", "CVCL_0213", "glycopeptide", "3071.46", "HPLC", "Q-Tof hybrid", "Carboxymethylation | tryptic digest", "", "", "CAD", "MALDI", "The notation ManX, where X ranges from 4 to 9 in the case of the observed tryptic and chymotryptic glycopeptides, indicates that X mannose residues are attached to the chitobiose core (GlcNAc ?(1-4) GlcNAc) | the differences in the number of mannose residues is caused by the slight differences between the E2 glycoprotein batches that were used. The majority of these sites proved to be occupied by high mannose glycans. The relative abundance was determined from deconvoluted mass spectrum over the mass range containing the glycopeptide ions corresponding to glycopeptides with the same amino acid sequence. See glycopeptide sequence reported.", "43509", "39982", "NYT", "NXT" ], [ "P27958-1", "623", "Asn", "G02815KT", "N-linked", "protein_xref_unicarbkb", "P27958", "protein_xref_glygen_ds", "GLYDS000335", "", "18187336", "AF009606", "AF009606.1", "AAB66324.1", "polyprotein [Hepatitis C virus subtype 1a]", "Genome polyprotein", "63746", "Hepacivirus C", "Hepatitis C virus subtype 1a (Isolate H)", "241", "GlcNAc", "Man5", "Hex5HexNAc2", "HexNAc2Hex5dHex0NeuAc0NeuGc0Pent0S0P0KDN0HexA0", "High mannose", "", "M5", "0.54", "LWHYPCTINYTIFK", "11.49", "high mannose glycans", "", "Chinese hamster ovary (CHO) cells", "CVCL_0213", "glycopeptide", "3071.46", "HPLC", "Q-Tof hybrid", "Carboxymethylation | tryptic digest", "", "", "CAD", "MALDI", "The notation ManX, where X ranges from 4 to 9 in the case of the observed tryptic and chymotryptic glycopeptides, indicates that X mannose residues are attached to the chitobiose core (GlcNAc ?(1-4) GlcNAc) | the differences in the number of mannose residues is caused by the slight differences between the E2 glycoprotein batches that were used. The majority of these sites proved to be occupied by high mannose glycans. The relative abundance was determined from deconvoluted mass spectrum over the mass range containing the glycopeptide ions corresponding to glycopeptides with the same amino acid sequence. See glycopeptide sequence reported.", "43509", "39982", "NYT", "NXT" ], [ "P27958-1", "623", "Asn", "G41247ZX", "N-linked", "protein_xref_pubmed", "18187336", "protein_xref_glygen_ds", "GLYDS000335", "", "18187336", "AF009606", "AF009606.1", "AAB66324.1", "polyprotein [Hepatitis C virus subtype 1a]", "Genome polyprotein", "63746", "Hepacivirus C", "Hepatitis C virus subtype 1a (Isolate H)", "241", "GlcNAc", "Man6", "Hex6HexNAc2", "HexNAc2Hex6dHex0NeuAc0NeuGc0Pent0S0P0KDN0HexA0", "High mannose", "", "M6", "1", "LWHYPCTINYTIFK", "21.28", "high mannose glycans", "", "Chinese hamster ovary (CHO) cells", "CVCL_0213", "glycopeptide", "3233.523", "HPLC", "Q-Tof hybrid", "Carboxymethylation | tryptic digest", "", "", "CAD", "MALDI", "The notation ManX, where X ranges from 4 to 9 in the case of the observed tryptic and chymotryptic glycopeptides, indicates that X mannose residues are attached to the chitobiose core (GlcNAc ?(1-4) GlcNAc) | the differences in the number of mannose residues is caused by the slight differences between the E2 glycoprotein batches that were used. The majority of these sites proved to be occupied by high mannose glycans. The relative abundance was determined from deconvoluted mass spectrum over the mass range containing the glycopeptide ions corresponding to glycopeptides with the same amino acid sequence. See glycopeptide sequence reported.", "43509", "39982", "NYT", "NXT" ], [ "P27958-1", "623", "Asn", "G41247ZX", "N-linked", "protein_xref_glygen_ds", "GLYDS000335", "protein_xref_glygen_ds", "GLYDS000335", "", "18187336", "AF009606", "AF009606.1", "AAB66324.1", "polyprotein [Hepatitis C virus subtype 1a]", "Genome polyprotein", "63746", "Hepacivirus C", "Hepatitis C virus subtype 1a (Isolate H)", "241", "GlcNAc", "Man6", "Hex6HexNAc2", "HexNAc2Hex6dHex0NeuAc0NeuGc0Pent0S0P0KDN0HexA0", "High mannose", "", "M6", "1", "LWHYPCTINYTIFK", "21.28", "high mannose glycans", "", "Chinese hamster ovary (CHO) cells", "CVCL_0213", "glycopeptide", "3233.523", "HPLC", "Q-Tof hybrid", "Carboxymethylation | tryptic digest", "", "", "CAD", "MALDI", "The notation ManX, where X ranges from 4 to 9 in the case of the observed tryptic and chymotryptic glycopeptides, indicates that X mannose residues are attached to the chitobiose core (GlcNAc ?(1-4) GlcNAc) | the differences in the number of mannose residues is caused by the slight differences between the E2 glycoprotein batches that were used. The majority of these sites proved to be occupied by high mannose glycans. The relative abundance was determined from deconvoluted mass spectrum over the mass range containing the glycopeptide ions corresponding to glycopeptides with the same amino acid sequence. See glycopeptide sequence reported.", "43509", "39982", "NYT", "NXT" ], [ "P27958-1", "623", "Asn", "G41247ZX", "N-linked", "protein_xref_unicarbkb", "P27958", "protein_xref_glygen_ds", "GLYDS000335", "", "18187336", "AF009606", "AF009606.1", "AAB66324.1", "polyprotein [Hepatitis C virus subtype 1a]", "Genome polyprotein", "63746", "Hepacivirus C", "Hepatitis C virus subtype 1a (Isolate H)", "241", "GlcNAc", "Man6", "Hex6HexNAc2", "HexNAc2Hex6dHex0NeuAc0NeuGc0Pent0S0P0KDN0HexA0", "High mannose", "", "M6", "1", "LWHYPCTINYTIFK", "21.28", "high mannose glycans", "", "Chinese hamster ovary (CHO) cells", "CVCL_0213", "glycopeptide", "3233.523", "HPLC", "Q-Tof hybrid", "Carboxymethylation | tryptic digest", "", "", "CAD", "MALDI", "The notation ManX, where X ranges from 4 to 9 in the case of the observed tryptic and chymotryptic glycopeptides, indicates that X mannose residues are attached to the chitobiose core (GlcNAc ?(1-4) GlcNAc) | the differences in the number of mannose residues is caused by the slight differences between the E2 glycoprotein batches that were used. The majority of these sites proved to be occupied by high mannose glycans. The relative abundance was determined from deconvoluted mass spectrum over the mass range containing the glycopeptide ions corresponding to glycopeptides with the same amino acid sequence. See glycopeptide sequence reported.", "43509", "39982", "NYT", "NXT" ], [ "P27958-1", "623", "Asn", "G31852PQ", "N-linked", "protein_xref_pubmed", "18187336", "protein_xref_glygen_ds", "GLYDS000335", "", "18187336", "AF009606", "AF009606.1", "AAB66324.1", "polyprotein [Hepatitis C virus subtype 1a]", "Genome polyprotein", "63746", "Hepacivirus C", "Hepatitis C virus subtype 1a (Isolate H)", "241", "GlcNAc", "Man7", "Hex7HexNAc2", "HexNAc2Hex7dHex0NeuAc0NeuGc0Pent0S0P0KDN0HexA0", "High mannose", "", "M7", "0.65", "LWHYPCTINYTIFK", "13.83", "high mannose glycans", "", "Chinese hamster ovary (CHO) cells", "CVCL_0213", "glycopeptide", "3395.487", "HPLC", "Q-Tof hybrid", "Carboxymethylation | tryptic digest", "", "", "CAD", "MALDI", "The notation ManX, where X ranges from 4 to 9 in the case of the observed tryptic and chymotryptic glycopeptides, indicates that X mannose residues are attached to the chitobiose core (GlcNAc ?(1-4) GlcNAc) | the differences in the number of mannose residues is caused by the slight differences between the E2 glycoprotein batches that were used. The majority of these sites proved to be occupied by high mannose glycans. The relative abundance was determined from deconvoluted mass spectrum over the mass range containing the glycopeptide ions corresponding to glycopeptides with the same amino acid sequence. See glycopeptide sequence reported.", "43509", "39982", "NYT", "NXT" ], [ "P27958-1", "623", "Asn", "G31852PQ", "N-linked", "protein_xref_glygen_ds", "GLYDS000335", "protein_xref_glygen_ds", "GLYDS000335", "", "18187336", "AF009606", "AF009606.1", "AAB66324.1", "polyprotein [Hepatitis C virus subtype 1a]", "Genome polyprotein", "63746", "Hepacivirus C", "Hepatitis C virus subtype 1a (Isolate H)", "241", "GlcNAc", "Man7", "Hex7HexNAc2", "HexNAc2Hex7dHex0NeuAc0NeuGc0Pent0S0P0KDN0HexA0", "High mannose", "", "M7", "0.65", "LWHYPCTINYTIFK", "13.83", "high mannose glycans", "", "Chinese hamster ovary (CHO) cells", "CVCL_0213", "glycopeptide", "3395.487", "HPLC", "Q-Tof hybrid", "Carboxymethylation | tryptic digest", "", "", "CAD", "MALDI", "The notation ManX, where X ranges from 4 to 9 in the case of the observed tryptic and chymotryptic glycopeptides, indicates that X mannose residues are attached to the chitobiose core (GlcNAc ?(1-4) GlcNAc) | the differences in the number of mannose residues is caused by the slight differences between the E2 glycoprotein batches that were used. The majority of these sites proved to be occupied by high mannose glycans. The relative abundance was determined from deconvoluted mass spectrum over the mass range containing the glycopeptide ions corresponding to glycopeptides with the same amino acid sequence. See glycopeptide sequence reported.", "43509", "39982", "NYT", "NXT" ], [ "P27958-1", "623", "Asn", "G31852PQ", "N-linked", "protein_xref_unicarbkb", "P27958", "protein_xref_glygen_ds", "GLYDS000335", "", "18187336", "AF009606", "AF009606.1", "AAB66324.1", "polyprotein [Hepatitis C virus subtype 1a]", "Genome polyprotein", "63746", "Hepacivirus C", "Hepatitis C virus subtype 1a (Isolate H)", "241", "GlcNAc", "Man7", "Hex7HexNAc2", "HexNAc2Hex7dHex0NeuAc0NeuGc0Pent0S0P0KDN0HexA0", "High mannose", "", "M7", "0.65", "LWHYPCTINYTIFK", "13.83", "high mannose glycans", "", "Chinese hamster ovary (CHO) cells", "CVCL_0213", "glycopeptide", "3395.487", "HPLC", "Q-Tof hybrid", "Carboxymethylation | tryptic digest", "", "", "CAD", "MALDI", "The notation ManX, where X ranges from 4 to 9 in the case of the observed tryptic and chymotryptic glycopeptides, indicates that X mannose residues are attached to the chitobiose core (GlcNAc ?(1-4) GlcNAc) | the differences in the number of mannose residues is caused by the slight differences between the E2 glycoprotein batches that were used. The majority of these sites proved to be occupied by high mannose glycans. The relative abundance was determined from deconvoluted mass spectrum over the mass range containing the glycopeptide ions corresponding to glycopeptides with the same amino acid sequence. See glycopeptide sequence reported.", "43509", "39982", "NYT", "NXT" ], [ "P27958-1", "623", "Asn", "G62765YT", "N-linked", "protein_xref_pubmed", "18187336", "protein_xref_glygen_ds", "GLYDS000335", "", "18187336", "AF009606", "AF009606.1", "AAB66324.1", "polyprotein [Hepatitis C virus subtype 1a]", "Genome polyprotein", "63746", "Hepacivirus C", "Hepatitis C virus subtype 1a (Isolate H)", "241", "GlcNAc", "Man8", "Hex8HexNAc2", "HexNAc2Hex8dHex0NeuAc0NeuGc0Pent0S0P0KDN0HexA0", "High mannose", "", "M8", "0.38", "LWHYPCTINYTIFK", "8.09", "high mannose glycans", "", "Chinese hamster ovary (CHO) cells", "CVCL_0213", "glycopeptide", "3557.509", "HPLC", "Q-Tof hybrid", "Carboxymethylation | tryptic digest", "", "", "CAD", "MALDI", "The notation ManX, where X ranges from 4 to 9 in the case of the observed tryptic and chymotryptic glycopeptides, indicates that X mannose residues are attached to the chitobiose core (GlcNAc ?(1-4) GlcNAc) | the differences in the number of mannose residues is caused by the slight differences between the E2 glycoprotein batches that were used. The majority of these sites proved to be occupied by high mannose glycans. The relative abundance was determined from deconvoluted mass spectrum over the mass range containing the glycopeptide ions corresponding to glycopeptides with the same amino acid sequence. See glycopeptide sequence reported.", "43509", "39982", "NYT", "NXT" ], [ "P27958-1", "623", "Asn", "G62765YT", "N-linked", "protein_xref_glygen_ds", "GLYDS000335", "protein_xref_glygen_ds", "GLYDS000335", "", "18187336", "AF009606", "AF009606.1", "AAB66324.1", "polyprotein [Hepatitis C virus subtype 1a]", "Genome polyprotein", "63746", "Hepacivirus C", "Hepatitis C virus subtype 1a (Isolate H)", "241", "GlcNAc", "Man8", "Hex8HexNAc2", "HexNAc2Hex8dHex0NeuAc0NeuGc0Pent0S0P0KDN0HexA0", "High mannose", "", "M8", "0.38", "LWHYPCTINYTIFK", "8.09", "high mannose glycans", "", "Chinese hamster ovary (CHO) cells", "CVCL_0213", "glycopeptide", "3557.509", "HPLC", "Q-Tof hybrid", "Carboxymethylation | tryptic digest", "", "", "CAD", "MALDI", "The notation ManX, where X ranges from 4 to 9 in the case of the observed tryptic and chymotryptic glycopeptides, indicates that X mannose residues are attached to the chitobiose core (GlcNAc ?(1-4) GlcNAc) | the differences in the number of mannose residues is caused by the slight differences between the E2 glycoprotein batches that were used. The majority of these sites proved to be occupied by high mannose glycans. The relative abundance was determined from deconvoluted mass spectrum over the mass range containing the glycopeptide ions corresponding to glycopeptides with the same amino acid sequence. See glycopeptide sequence reported.", "43509", "39982", "NYT", "NXT" ], [ "P27958-1", "623", "Asn", "G62765YT", "N-linked", "protein_xref_unicarbkb", "P27958", "protein_xref_glygen_ds", "GLYDS000335", "", "18187336", "AF009606", "AF009606.1", "AAB66324.1", "polyprotein [Hepatitis C virus subtype 1a]", "Genome polyprotein", "63746", "Hepacivirus C", "Hepatitis C virus subtype 1a (Isolate H)", "241", "GlcNAc", "Man8", "Hex8HexNAc2", "HexNAc2Hex8dHex0NeuAc0NeuGc0Pent0S0P0KDN0HexA0", "High mannose", "", "M8", "0.38", "LWHYPCTINYTIFK", "8.09", "high mannose glycans", "", "Chinese hamster ovary (CHO) cells", "CVCL_0213", "glycopeptide", "3557.509", "HPLC", "Q-Tof hybrid", "Carboxymethylation | tryptic digest", "", "", "CAD", "MALDI", "The notation ManX, where X ranges from 4 to 9 in the case of the observed tryptic and chymotryptic glycopeptides, indicates that X mannose residues are attached to the chitobiose core (GlcNAc ?(1-4) GlcNAc) | the differences in the number of mannose residues is caused by the slight differences between the E2 glycoprotein batches that were used. The majority of these sites proved to be occupied by high mannose glycans. The relative abundance was determined from deconvoluted mass spectrum over the mass range containing the glycopeptide ions corresponding to glycopeptides with the same amino acid sequence. See glycopeptide sequence reported.", "43509", "39982", "NYT", "NXT" ], [ "P27958-1", "623", "Asn", "G80920RR", "N-linked", "protein_xref_pubmed", "18187336", "protein_xref_glygen_ds", "GLYDS000335", "", "18187336", "AF009606", "AF009606.1", "AAB66324.1", "polyprotein [Hepatitis C virus subtype 1a]", "Genome polyprotein", "63746", "Hepacivirus C", "Hepatitis C virus subtype 1a (Isolate H)", "241", "GlcNAc", "Man9", "Hex9HexNAc2", "HexNAc2Hex9dHex0NeuAc0NeuGc0Pent0S0P0KDN0HexA0", "High mannose", "", "M9", "0.52", "LWHYPCTINYTIFK", "11.06", "high mannose glycans", "", "Chinese hamster ovary (CHO) cells", "CVCL_0213", "glycopeptide", "3719.503", "HPLC", "Q-Tof hybrid", "Carboxymethylation | tryptic digest", "", "", "CAD", "MALDI", "The notation ManX, where X ranges from 4 to 9 in the case of the observed tryptic and chymotryptic glycopeptides, indicates that X mannose residues are attached to the chitobiose core (GlcNAc ?(1-4) GlcNAc) | the differences in the number of mannose residues is caused by the slight differences between the E2 glycoprotein batches that were used. The majority of these sites proved to be occupied by high mannose glycans. The relative abundance was determined from deconvoluted mass spectrum over the mass range containing the glycopeptide ions corresponding to glycopeptides with the same amino acid sequence. See glycopeptide sequence reported.", "43509", "39982", "NYT", "NXT" ], [ "P27958-1", "623", "Asn", "G80920RR", "N-linked", "protein_xref_glygen_ds", "GLYDS000335", "protein_xref_glygen_ds", "GLYDS000335", "", "18187336", "AF009606", "AF009606.1", "AAB66324.1", "polyprotein [Hepatitis C virus subtype 1a]", "Genome polyprotein", "63746", "Hepacivirus C", "Hepatitis C virus subtype 1a (Isolate H)", "241", "GlcNAc", "Man9", "Hex9HexNAc2", "HexNAc2Hex9dHex0NeuAc0NeuGc0Pent0S0P0KDN0HexA0", "High mannose", "", "M9", "0.52", "LWHYPCTINYTIFK", "11.06", "high mannose glycans", "", "Chinese hamster ovary (CHO) cells", "CVCL_0213", "glycopeptide", "3719.503", "HPLC", "Q-Tof hybrid", "Carboxymethylation | tryptic digest", "", "", "CAD", "MALDI", "The notation ManX, where X ranges from 4 to 9 in the case of the observed tryptic and chymotryptic glycopeptides, indicates that X mannose residues are attached to the chitobiose core (GlcNAc ?(1-4) GlcNAc) | the differences in the number of mannose residues is caused by the slight differences between the E2 glycoprotein batches that were used. The majority of these sites proved to be occupied by high mannose glycans. The relative abundance was determined from deconvoluted mass spectrum over the mass range containing the glycopeptide ions corresponding to glycopeptides with the same amino acid sequence. See glycopeptide sequence reported.", "43509", "39982", "NYT", "NXT" ], [ "P27958-1", "623", "Asn", "G80920RR", "N-linked", "protein_xref_unicarbkb", "P27958", "protein_xref_glygen_ds", "GLYDS000335", "", "18187336", "AF009606", "AF009606.1", "AAB66324.1", "polyprotein [Hepatitis C virus subtype 1a]", "Genome polyprotein", "63746", "Hepacivirus C", "Hepatitis C virus subtype 1a (Isolate H)", "241", "GlcNAc", "Man9", "Hex9HexNAc2", "HexNAc2Hex9dHex0NeuAc0NeuGc0Pent0S0P0KDN0HexA0", "High mannose", "", "M9", "0.52", "LWHYPCTINYTIFK", "11.06", "high mannose glycans", "", "Chinese hamster ovary (CHO) cells", "CVCL_0213", "glycopeptide", "3719.503", "HPLC", "Q-Tof hybrid", "Carboxymethylation | tryptic digest", "", "", "CAD", "MALDI", "The notation ManX, where X ranges from 4 to 9 in the case of the observed tryptic and chymotryptic glycopeptides, indicates that X mannose residues are attached to the chitobiose core (GlcNAc ?(1-4) GlcNAc) | the differences in the number of mannose residues is caused by the slight differences between the E2 glycoprotein batches that were used. The majority of these sites proved to be occupied by high mannose glycans. The relative abundance was determined from deconvoluted mass spectrum over the mass range containing the glycopeptide ions corresponding to glycopeptides with the same amino acid sequence. See glycopeptide sequence reported.", "43509", "39982", "NYT", "NXT" ], [ "P27958-1", "623", "Asn", "G83460ZZ", "N-linked", "protein_xref_pubmed", "18187336", "protein_xref_glygen_ds", "GLYDS000335", "", "18187336", "AF009606", "AF009606.1", "AAB66324.1", "polyprotein [Hepatitis C virus subtype 1a]", "Genome polyprotein", "63746", "Hepacivirus C", "Hepatitis C virus subtype 1a (Isolate H)", "241", "GlcNAc", "Hex1Man9", "Hex10HexNAc2", "HexNAc2Hex10dHex0NeuAc0NeuGc0Pent0S0P0KDN0HexA0", "High mannose", "", "M9Glc1", "0.44", "LWHYPCTINYTIFK", "9.36", "high mannose glycans", "", "Chinese hamster ovary (CHO) cells", "CVCL_0213", "glycopeptide", "3881.632", "HPLC", "Q-Tof hybrid", "Carboxymethylation | tryptic digest", "", "", "CAD", "MALDI", "The notation ManX, where X ranges from 4 to 9 in the case of the observed tryptic and chymotryptic glycopeptides, indicates that X mannose residues are attached to the chitobiose core (GlcNAc ?(1-4) GlcNAc) | the differences in the number of mannose residues is caused by the slight differences between the E2 glycoprotein batches that were used. The majority of these sites proved to be occupied by high mannose glycans. The relative abundance was determined from deconvoluted mass spectrum over the mass range containing the glycopeptide ions corresponding to glycopeptides with the same amino acid sequence. See glycopeptide sequence reported.", "43509", "39982", "NYT", "NXT" ], [ "P27958-1", "623", "Asn", "G83460ZZ", "N-linked", "protein_xref_glygen_ds", "GLYDS000335", "protein_xref_glygen_ds", "GLYDS000335", "", "18187336", "AF009606", "AF009606.1", "AAB66324.1", "polyprotein [Hepatitis C virus subtype 1a]", "Genome polyprotein", "63746", "Hepacivirus C", "Hepatitis C virus subtype 1a (Isolate H)", "241", "GlcNAc", "Hex1Man9", "Hex10HexNAc2", "HexNAc2Hex10dHex0NeuAc0NeuGc0Pent0S0P0KDN0HexA0", "High mannose", "", "M9Glc1", "0.44", "LWHYPCTINYTIFK", "9.36", "high mannose glycans", "", "Chinese hamster ovary (CHO) cells", "CVCL_0213", "glycopeptide", "3881.632", "HPLC", "Q-Tof hybrid", "Carboxymethylation | tryptic digest", "", "", "CAD", "MALDI", "The notation ManX, where X ranges from 4 to 9 in the case of the observed tryptic and chymotryptic glycopeptides, indicates that X mannose residues are attached to the chitobiose core (GlcNAc ?(1-4) GlcNAc) | the differences in the number of mannose residues is caused by the slight differences between the E2 glycoprotein batches that were used. The majority of these sites proved to be occupied by high mannose glycans. The relative abundance was determined from deconvoluted mass spectrum over the mass range containing the glycopeptide ions corresponding to glycopeptides with the same amino acid sequence. See glycopeptide sequence reported.", "43509", "39982", "NYT", "NXT" ], [ "P27958-1", "623", "Asn", "G83460ZZ", "N-linked", "protein_xref_unicarbkb", "P27958", "protein_xref_glygen_ds", "GLYDS000335", "", "18187336", "AF009606", "AF009606.1", "AAB66324.1", "polyprotein [Hepatitis C virus subtype 1a]", "Genome polyprotein", "63746", "Hepacivirus C", "Hepatitis C virus subtype 1a (Isolate H)", "241", "GlcNAc", "Hex1Man9", "Hex10HexNAc2", "HexNAc2Hex10dHex0NeuAc0NeuGc0Pent0S0P0KDN0HexA0", "High mannose", "", "M9Glc1", "0.44", "LWHYPCTINYTIFK", "9.36", "high mannose glycans", "", "Chinese hamster ovary (CHO) cells", "CVCL_0213", "glycopeptide", "3881.632", "HPLC", "Q-Tof hybrid", "Carboxymethylation | tryptic digest", "", "", "CAD", "MALDI", "The notation ManX, where X ranges from 4 to 9 in the case of the observed tryptic and chymotryptic glycopeptides, indicates that X mannose residues are attached to the chitobiose core (GlcNAc ?(1-4) GlcNAc) | the differences in the number of mannose residues is caused by the slight differences between the E2 glycoprotein batches that were used. The majority of these sites proved to be occupied by high mannose glycans. The relative abundance was determined from deconvoluted mass spectrum over the mass range containing the glycopeptide ions corresponding to glycopeptides with the same amino acid sequence. See glycopeptide sequence reported.", "43509", "39982", "NYT", "NXT" ], [ "P27958-1", "623", "Asn", "G58087IP", "N-linked", "protein_xref_pubmed", "18187336", "protein_xref_glygen_ds", "GLYDS000335", "", "18187336", "AF009606", "AF009606.1", "AAB66324.1", "polyprotein [Hepatitis C virus subtype 1a]", "Genome polyprotein", "63746", "Hepacivirus C", "Hepatitis C virus subtype 1a (Isolate H)", "241", "GlcNAc", "Hex2Man9", "Hex11HexNAc2", "HexNAc2Hex11dHex0NeuAc0NeuGc0Pent0S0P0KDN0HexA0", "High mannose", "", "M9Glc2", "0.7", "LWHYPCTINYTIFK", "14.89", "high mannose glycans", "", "Chinese hamster ovary (CHO) cells", "CVCL_0213", "glycopeptide", "4043.664", "HPLC", "Q-Tof hybrid", "Carboxymethylation | tryptic digest", "", "", "CAD", "MALDI", "The notation ManX, where X ranges from 4 to 9 in the case of the observed tryptic and chymotryptic glycopeptides, indicates that X mannose residues are attached to the chitobiose core (GlcNAc ?(1-4) GlcNAc) | the differences in the number of mannose residues is caused by the slight differences between the E2 glycoprotein batches that were used. The majority of these sites proved to be occupied by high mannose glycans. The relative abundance was determined from deconvoluted mass spectrum over the mass range containing the glycopeptide ions corresponding to glycopeptides with the same amino acid sequence. See glycopeptide sequence reported.", "43509", "39982", "NYT", "NXT" ], [ "P27958-1", "623", "Asn", "G58087IP", "N-linked", "protein_xref_glygen_ds", "GLYDS000335", "protein_xref_glygen_ds", "GLYDS000335", "", "18187336", "AF009606", "AF009606.1", "AAB66324.1", "polyprotein [Hepatitis C virus subtype 1a]", "Genome polyprotein", "63746", "Hepacivirus C", "Hepatitis C virus subtype 1a (Isolate H)", "241", "GlcNAc", "Hex2Man9", "Hex11HexNAc2", "HexNAc2Hex11dHex0NeuAc0NeuGc0Pent0S0P0KDN0HexA0", "High mannose", "", "M9Glc2", "0.7", "LWHYPCTINYTIFK", "14.89", "high mannose glycans", "", "Chinese hamster ovary (CHO) cells", "CVCL_0213", "glycopeptide", "4043.664", "HPLC", "Q-Tof hybrid", "Carboxymethylation | tryptic digest", "", "", "CAD", "MALDI", "The notation ManX, where X ranges from 4 to 9 in the case of the observed tryptic and chymotryptic glycopeptides, indicates that X mannose residues are attached to the chitobiose core (GlcNAc ?(1-4) GlcNAc) | the differences in the number of mannose residues is caused by the slight differences between the E2 glycoprotein batches that were used. The majority of these sites proved to be occupied by high mannose glycans. The relative abundance was determined from deconvoluted mass spectrum over the mass range containing the glycopeptide ions corresponding to glycopeptides with the same amino acid sequence. See glycopeptide sequence reported.", "43509", "39982", "NYT", "NXT" ], [ "P27958-1", "623", "Asn", "G58087IP", "N-linked", "protein_xref_unicarbkb", "P27958", "protein_xref_glygen_ds", "GLYDS000335", "", "18187336", "AF009606", "AF009606.1", "AAB66324.1", "polyprotein [Hepatitis C virus subtype 1a]", "Genome polyprotein", "63746", "Hepacivirus C", "Hepatitis C virus subtype 1a (Isolate H)", "241", "GlcNAc", "Hex2Man9", "Hex11HexNAc2", "HexNAc2Hex11dHex0NeuAc0NeuGc0Pent0S0P0KDN0HexA0", "High mannose", "", "M9Glc2", "0.7", "LWHYPCTINYTIFK", "14.89", "high mannose glycans", "", "Chinese hamster ovary (CHO) cells", "CVCL_0213", "glycopeptide", "4043.664", "HPLC", "Q-Tof hybrid", "Carboxymethylation | tryptic digest", "", "", "CAD", "MALDI", "The notation ManX, where X ranges from 4 to 9 in the case of the observed tryptic and chymotryptic glycopeptides, indicates that X mannose residues are attached to the chitobiose core (GlcNAc ?(1-4) GlcNAc) | the differences in the number of mannose residues is caused by the slight differences between the E2 glycoprotein batches that were used. The majority of these sites proved to be occupied by high mannose glycans. The relative abundance was determined from deconvoluted mass spectrum over the mass range containing the glycopeptide ions corresponding to glycopeptides with the same amino acid sequence. See glycopeptide sequence reported.", "43509", "39982", "NYT", "NXT" ], [ "P27958-1", "623", "Asn", "G59324HL", "N-linked", "protein_xref_pubmed", "18187336", "protein_xref_glygen_ds", "GLYDS000335", "", "18187336", "AF009606", "AF009606.1", "AAB66324.1", "polyprotein [Hepatitis C virus subtype 1a]", "Genome polyprotein", "63746", "Hepacivirus C", "Hepatitis C virus subtype 1a (Isolate H)", "241", "GlcNAc", "Hex3Man9", "Hex12HexNAc2", "HexNAc2Hex12dHex0NeuAc0NeuGc0Pent0S0P0KDN0HexA0", "High mannose", "", "M9Glc3", "0.47", "LWHYPCTINYTIFK", "10", "high mannose glycans", "", "Chinese hamster ovary (CHO) cells", "CVCL_0213", "glycopeptide", "4205.722", "HPLC", "Q-Tof hybrid", "Carboxymethylation | tryptic digest", "", "", "CAD", "MALDI", "The notation ManX, where X ranges from 4 to 9 in the case of the observed tryptic and chymotryptic glycopeptides, indicates that X mannose residues are attached to the chitobiose core (GlcNAc ?(1-4) GlcNAc) | the differences in the number of mannose residues is caused by the slight differences between the E2 glycoprotein batches that were used. The majority of these sites proved to be occupied by high mannose glycans. The relative abundance was determined from deconvoluted mass spectrum over the mass range containing the glycopeptide ions corresponding to glycopeptides with the same amino acid sequence. See glycopeptide sequence reported.", "43509", "39982", "NYT", "NXT" ], [ "P27958-1", "623", "Asn", "G59324HL", "N-linked", "protein_xref_glygen_ds", "GLYDS000335", "protein_xref_glygen_ds", "GLYDS000335", "", "18187336", "AF009606", "AF009606.1", "AAB66324.1", "polyprotein [Hepatitis C virus subtype 1a]", "Genome polyprotein", "63746", "Hepacivirus C", "Hepatitis C virus subtype 1a (Isolate H)", "241", "GlcNAc", "Hex3Man9", "Hex12HexNAc2", "HexNAc2Hex12dHex0NeuAc0NeuGc0Pent0S0P0KDN0HexA0", "High mannose", "", "M9Glc3", "0.47", "LWHYPCTINYTIFK", "10", "high mannose glycans", "", "Chinese hamster ovary (CHO) cells", "CVCL_0213", "glycopeptide", "4205.722", "HPLC", "Q-Tof hybrid", "Carboxymethylation | tryptic digest", "", "", "CAD", "MALDI", "The notation ManX, where X ranges from 4 to 9 in the case of the observed tryptic and chymotryptic glycopeptides, indicates that X mannose residues are attached to the chitobiose core (GlcNAc ?(1-4) GlcNAc) | the differences in the number of mannose residues is caused by the slight differences between the E2 glycoprotein batches that were used. The majority of these sites proved to be occupied by high mannose glycans. The relative abundance was determined from deconvoluted mass spectrum over the mass range containing the glycopeptide ions corresponding to glycopeptides with the same amino acid sequence. See glycopeptide sequence reported.", "43509", "39982", "NYT", "NXT" ], [ "P27958-1", "623", "Asn", "G59324HL", "N-linked", "protein_xref_unicarbkb", "P27958", "protein_xref_glygen_ds", "GLYDS000335", "", "18187336", "AF009606", "AF009606.1", "AAB66324.1", "polyprotein [Hepatitis C virus subtype 1a]", "Genome polyprotein", "63746", "Hepacivirus C", "Hepatitis C virus subtype 1a (Isolate H)", "241", "GlcNAc", "Hex3Man9", "Hex12HexNAc2", "HexNAc2Hex12dHex0NeuAc0NeuGc0Pent0S0P0KDN0HexA0", "High mannose", "", "M9Glc3", "0.47", "LWHYPCTINYTIFK", "10", "high mannose glycans", "", "Chinese hamster ovary (CHO) cells", "CVCL_0213", "glycopeptide", "4205.722", "HPLC", "Q-Tof hybrid", "Carboxymethylation | tryptic digest", "", "", "CAD", "MALDI", "The notation ManX, where X ranges from 4 to 9 in the case of the observed tryptic and chymotryptic glycopeptides, indicates that X mannose residues are attached to the chitobiose core (GlcNAc ?(1-4) GlcNAc) | the differences in the number of mannose residues is caused by the slight differences between the E2 glycoprotein batches that were used. The majority of these sites proved to be occupied by high mannose glycans. The relative abundance was determined from deconvoluted mass spectrum over the mass range containing the glycopeptide ions corresponding to glycopeptides with the same amino acid sequence. See glycopeptide sequence reported.", "43509", "39982", "NYT", "NXT" ], [ "P27958-1", "645", "Asn", "G31852PQ", "N-linked", "protein_xref_pubmed", "18187336", "protein_xref_glygen_ds", "GLYDS000335", "", "18187336", "AF009606", "AF009606.1", "AAB66324.1", "polyprotein [Hepatitis C virus subtype 1a]", "Genome polyprotein", "63746", "Hepacivirus C", "Hepatitis C virus subtype 1a (Isolate H)", "263", "GlcNAc", "Man7", "Hex7HexNAc2", "HexNAc2Hex7dHex0NeuAc0NeuGc0Pent0S0P0KDN0HexA0", "High mannose", "", "M7", "0.25", "LEAACNWTRGERCDLEDR", "7.46", "high mannose glycans", "", "Chinese hamster ovary (CHO) cells", "CVCL_0213", "glycopeptide", "3676.497", "HPLC", "Q-Tof hybrid", "Carboxymethylation | tryptic digest", "", "", "CAD", "MALDI", "The notation ManX, where X ranges from 4 to 9 in the case of the observed tryptic and chymotryptic glycopeptides, indicates that X mannose residues are attached to the chitobiose core (GlcNAc ?(1-4) GlcNAc) | the differences in the number of mannose residues is caused by the slight differences between the E2 glycoprotein batches that were used. The majority of these sites proved to be occupied by high mannose glycans. The relative abundance was determined from deconvoluted mass spectrum over the mass range containing the glycopeptide ions corresponding to glycopeptides with the same amino acid sequence. See glycopeptide sequence reported.", "43509", "39982", "NWT", "NXT" ], [ "P27958-1", "645", "Asn", "G31852PQ", "N-linked", "protein_xref_glygen_ds", "GLYDS000335", "protein_xref_glygen_ds", "GLYDS000335", "", "18187336", "AF009606", "AF009606.1", "AAB66324.1", "polyprotein [Hepatitis C virus subtype 1a]", "Genome polyprotein", "63746", "Hepacivirus C", "Hepatitis C virus subtype 1a (Isolate H)", "263", "GlcNAc", "Man7", "Hex7HexNAc2", "HexNAc2Hex7dHex0NeuAc0NeuGc0Pent0S0P0KDN0HexA0", "High mannose", "", "M7", "0.25", "LEAACNWTRGERCDLEDR", "7.46", "high mannose glycans", "", "Chinese hamster ovary (CHO) cells", "CVCL_0213", "glycopeptide", "3676.497", "HPLC", "Q-Tof hybrid", "Carboxymethylation | tryptic digest", "", "", "CAD", "MALDI", "The notation ManX, where X ranges from 4 to 9 in the case of the observed tryptic and chymotryptic glycopeptides, indicates that X mannose residues are attached to the chitobiose core (GlcNAc ?(1-4) GlcNAc) | the differences in the number of mannose residues is caused by the slight differences between the E2 glycoprotein batches that were used. The majority of these sites proved to be occupied by high mannose glycans. The relative abundance was determined from deconvoluted mass spectrum over the mass range containing the glycopeptide ions corresponding to glycopeptides with the same amino acid sequence. See glycopeptide sequence reported.", "43509", "39982", "NWT", "NXT" ], [ "P27958-1", "645", "Asn", "G31852PQ", "N-linked", "protein_xref_unicarbkb", "P27958", "protein_xref_glygen_ds", "GLYDS000335", "", "18187336", "AF009606", "AF009606.1", "AAB66324.1", "polyprotein [Hepatitis C virus subtype 1a]", "Genome polyprotein", "63746", "Hepacivirus C", "Hepatitis C virus subtype 1a (Isolate H)", "263", "GlcNAc", "Man7", "Hex7HexNAc2", "HexNAc2Hex7dHex0NeuAc0NeuGc0Pent0S0P0KDN0HexA0", "High mannose", "", "M7", "0.25", "LEAACNWTRGERCDLEDR", "7.46", "high mannose glycans", "", "Chinese hamster ovary (CHO) cells", "CVCL_0213", "glycopeptide", "3676.497", "HPLC", "Q-Tof hybrid", "Carboxymethylation | tryptic digest", "", "", "CAD", "MALDI", "The notation ManX, where X ranges from 4 to 9 in the case of the observed tryptic and chymotryptic glycopeptides, indicates that X mannose residues are attached to the chitobiose core (GlcNAc ?(1-4) GlcNAc) | the differences in the number of mannose residues is caused by the slight differences between the E2 glycoprotein batches that were used. The majority of these sites proved to be occupied by high mannose glycans. The relative abundance was determined from deconvoluted mass spectrum over the mass range containing the glycopeptide ions corresponding to glycopeptides with the same amino acid sequence. See glycopeptide sequence reported.", "43509", "39982", "NWT", "NXT" ], [ "P27958-1", "645", "Asn", "G62765YT", "N-linked", "protein_xref_pubmed", "18187336", "protein_xref_glygen_ds", "GLYDS000335", "", "18187336", "AF009606", "AF009606.1", "AAB66324.1", "polyprotein [Hepatitis C virus subtype 1a]", "Genome polyprotein", "63746", "Hepacivirus C", "Hepatitis C virus subtype 1a (Isolate H)", "263", "GlcNAc", "Man8", "Hex8HexNAc2", "HexNAc2Hex8dHex0NeuAc0NeuGc0Pent0S0P0KDN0HexA0", "High mannose", "", "M8", "0.3", "LEAACNWTRGERCDLEDR", "8.96", "high mannose glycans", "", "Chinese hamster ovary (CHO) cells", "CVCL_0213", "glycopeptide", "3838.589", "HPLC", "Q-Tof hybrid", "Carboxymethylation | tryptic digest", "", "", "CAD", "MALDI", "The notation ManX, where X ranges from 4 to 9 in the case of the observed tryptic and chymotryptic glycopeptides, indicates that X mannose residues are attached to the chitobiose core (GlcNAc ?(1-4) GlcNAc) | the differences in the number of mannose residues is caused by the slight differences between the E2 glycoprotein batches that were used. The majority of these sites proved to be occupied by high mannose glycans. The relative abundance was determined from deconvoluted mass spectrum over the mass range containing the glycopeptide ions corresponding to glycopeptides with the same amino acid sequence. See glycopeptide sequence reported.", "43509", "39982", "NWT", "NXT" ], [ "P27958-1", "645", "Asn", "G62765YT", "N-linked", "protein_xref_glygen_ds", "GLYDS000335", "protein_xref_glygen_ds", "GLYDS000335", "", "18187336", "AF009606", "AF009606.1", "AAB66324.1", "polyprotein [Hepatitis C virus subtype 1a]", "Genome polyprotein", "63746", "Hepacivirus C", "Hepatitis C virus subtype 1a (Isolate H)", "263", "GlcNAc", "Man8", "Hex8HexNAc2", "HexNAc2Hex8dHex0NeuAc0NeuGc0Pent0S0P0KDN0HexA0", "High mannose", "", "M8", "0.3", "LEAACNWTRGERCDLEDR", "8.96", "high mannose glycans", "", "Chinese hamster ovary (CHO) cells", "CVCL_0213", "glycopeptide", "3838.589", "HPLC", "Q-Tof hybrid", "Carboxymethylation | tryptic digest", "", "", "CAD", "MALDI", "The notation ManX, where X ranges from 4 to 9 in the case of the observed tryptic and chymotryptic glycopeptides, indicates that X mannose residues are attached to the chitobiose core (GlcNAc ?(1-4) GlcNAc) | the differences in the number of mannose residues is caused by the slight differences between the E2 glycoprotein batches that were used. The majority of these sites proved to be occupied by high mannose glycans. The relative abundance was determined from deconvoluted mass spectrum over the mass range containing the glycopeptide ions corresponding to glycopeptides with the same amino acid sequence. See glycopeptide sequence reported.", "43509", "39982", "NWT", "NXT" ], [ "P27958-1", "645", "Asn", "G62765YT", "N-linked", "protein_xref_unicarbkb", "P27958", "protein_xref_glygen_ds", "GLYDS000335", "", "18187336", "AF009606", "AF009606.1", "AAB66324.1", "polyprotein [Hepatitis C virus subtype 1a]", "Genome polyprotein", "63746", "Hepacivirus C", "Hepatitis C virus subtype 1a (Isolate H)", "263", "GlcNAc", "Man8", "Hex8HexNAc2", "HexNAc2Hex8dHex0NeuAc0NeuGc0Pent0S0P0KDN0HexA0", "High mannose", "", "M8", "0.3", "LEAACNWTRGERCDLEDR", "8.96", "high mannose glycans", "", "Chinese hamster ovary (CHO) cells", "CVCL_0213", "glycopeptide", "3838.589", "HPLC", "Q-Tof hybrid", "Carboxymethylation | tryptic digest", "", "", "CAD", "MALDI", "The notation ManX, where X ranges from 4 to 9 in the case of the observed tryptic and chymotryptic glycopeptides, indicates that X mannose residues are attached to the chitobiose core (GlcNAc ?(1-4) GlcNAc) | the differences in the number of mannose residues is caused by the slight differences between the E2 glycoprotein batches that were used. The majority of these sites proved to be occupied by high mannose glycans. The relative abundance was determined from deconvoluted mass spectrum over the mass range containing the glycopeptide ions corresponding to glycopeptides with the same amino acid sequence. See glycopeptide sequence reported.", "43509", "39982", "NWT", "NXT" ], [ "P27958-1", "645", "Asn", "G80920RR", "N-linked", "protein_xref_pubmed", "18187336", "protein_xref_glygen_ds", "GLYDS000335", "", "18187336", "AF009606", "AF009606.1", "AAB66324.1", "polyprotein [Hepatitis C virus subtype 1a]", "Genome polyprotein", "63746", "Hepacivirus C", "Hepatitis C virus subtype 1a (Isolate H)", "263", "GlcNAc", "Man9", "Hex9HexNAc2", "HexNAc2Hex9dHex0NeuAc0NeuGc0Pent0S0P0KDN0HexA0", "High mannose", "", "M9", "0.7", "LEAACNWTRGERCDLEDR", "20.9", "high mannose glycans", "", "Chinese hamster ovary (CHO) cells", "CVCL_0213", "glycopeptide", "4000.6", "HPLC", "Q-Tof hybrid", "Carboxymethylation | tryptic digest", "", "", "CAD", "MALDI", "The notation ManX, where X ranges from 4 to 9 in the case of the observed tryptic and chymotryptic glycopeptides, indicates that X mannose residues are attached to the chitobiose core (GlcNAc ?(1-4) GlcNAc) | the differences in the number of mannose residues is caused by the slight differences between the E2 glycoprotein batches that were used. The majority of these sites proved to be occupied by high mannose glycans. The relative abundance was determined from deconvoluted mass spectrum over the mass range containing the glycopeptide ions corresponding to glycopeptides with the same amino acid sequence. See glycopeptide sequence reported.", "43509", "39982", "NWT", "NXT" ], [ "P27958-1", "645", "Asn", "G80920RR", "N-linked", "protein_xref_glygen_ds", "GLYDS000335", "protein_xref_glygen_ds", "GLYDS000335", "", "18187336", "AF009606", "AF009606.1", "AAB66324.1", "polyprotein [Hepatitis C virus subtype 1a]", "Genome polyprotein", "63746", "Hepacivirus C", "Hepatitis C virus subtype 1a (Isolate H)", "263", "GlcNAc", "Man9", "Hex9HexNAc2", "HexNAc2Hex9dHex0NeuAc0NeuGc0Pent0S0P0KDN0HexA0", "High mannose", "", "M9", "0.7", "LEAACNWTRGERCDLEDR", "20.9", "high mannose glycans", "", "Chinese hamster ovary (CHO) cells", "CVCL_0213", "glycopeptide", "4000.6", "HPLC", "Q-Tof hybrid", "Carboxymethylation | tryptic digest", "", "", "CAD", "MALDI", "The notation ManX, where X ranges from 4 to 9 in the case of the observed tryptic and chymotryptic glycopeptides, indicates that X mannose residues are attached to the chitobiose core (GlcNAc ?(1-4) GlcNAc) | the differences in the number of mannose residues is caused by the slight differences between the E2 glycoprotein batches that were used. The majority of these sites proved to be occupied by high mannose glycans. The relative abundance was determined from deconvoluted mass spectrum over the mass range containing the glycopeptide ions corresponding to glycopeptides with the same amino acid sequence. See glycopeptide sequence reported.", "43509", "39982", "NWT", "NXT" ], [ "P27958-1", "645", "Asn", "G80920RR", "N-linked", "protein_xref_unicarbkb", "P27958", "protein_xref_glygen_ds", "GLYDS000335", "", "18187336", "AF009606", "AF009606.1", "AAB66324.1", "polyprotein [Hepatitis C virus subtype 1a]", "Genome polyprotein", "63746", "Hepacivirus C", "Hepatitis C virus subtype 1a (Isolate H)", "263", "GlcNAc", "Man9", "Hex9HexNAc2", "HexNAc2Hex9dHex0NeuAc0NeuGc0Pent0S0P0KDN0HexA0", "High mannose", "", "M9", "0.7", "LEAACNWTRGERCDLEDR", "20.9", "high mannose glycans", "", "Chinese hamster ovary (CHO) cells", "CVCL_0213", "glycopeptide", "4000.6", "HPLC", "Q-Tof hybrid", "Carboxymethylation | tryptic digest", "", "", "CAD", "MALDI", "The notation ManX, where X ranges from 4 to 9 in the case of the observed tryptic and chymotryptic glycopeptides, indicates that X mannose residues are attached to the chitobiose core (GlcNAc ?(1-4) GlcNAc) | the differences in the number of mannose residues is caused by the slight differences between the E2 glycoprotein batches that were used. The majority of these sites proved to be occupied by high mannose glycans. The relative abundance was determined from deconvoluted mass spectrum over the mass range containing the glycopeptide ions corresponding to glycopeptides with the same amino acid sequence. See glycopeptide sequence reported.", "43509", "39982", "NWT", "NXT" ], [ "P27958-1", "645", "Asn", "G83460ZZ", "N-linked", "protein_xref_pubmed", "18187336", "protein_xref_glygen_ds", "GLYDS000335", "", "18187336", "AF009606", "AF009606.1", "AAB66324.1", "polyprotein [Hepatitis C virus subtype 1a]", "Genome polyprotein", "63746", "Hepacivirus C", "Hepatitis C virus subtype 1a (Isolate H)", "263", "GlcNAc", "Hex1Man9", "Hex10HexNAc2", "HexNAc2Hex10dHex0NeuAc0NeuGc0Pent0S0P0KDN0HexA0", "High mannose", "", "M9Glc1", "1", "LEAACNWTRGERCDLEDR", "29.85", "high mannose glycans", "", "Chinese hamster ovary (CHO) cells", "CVCL_0213", "glycopeptide", "4162.65", "HPLC", "Q-Tof hybrid", "Carboxymethylation | tryptic digest", "", "", "CAD", "MALDI", "The notation ManX, where X ranges from 4 to 9 in the case of the observed tryptic and chymotryptic glycopeptides, indicates that X mannose residues are attached to the chitobiose core (GlcNAc ?(1-4) GlcNAc) | the differences in the number of mannose residues is caused by the slight differences between the E2 glycoprotein batches that were used. The majority of these sites proved to be occupied by high mannose glycans. The relative abundance was determined from deconvoluted mass spectrum over the mass range containing the glycopeptide ions corresponding to glycopeptides with the same amino acid sequence. See glycopeptide sequence reported.", "43509", "39982", "NWT", "NXT" ], [ "P27958-1", "645", "Asn", "G83460ZZ", "N-linked", "protein_xref_glygen_ds", "GLYDS000335", "protein_xref_glygen_ds", "GLYDS000335", "", "18187336", "AF009606", "AF009606.1", "AAB66324.1", "polyprotein [Hepatitis C virus subtype 1a]", "Genome polyprotein", "63746", "Hepacivirus C", "Hepatitis C virus subtype 1a (Isolate H)", "263", "GlcNAc", "Hex1Man9", "Hex10HexNAc2", "HexNAc2Hex10dHex0NeuAc0NeuGc0Pent0S0P0KDN0HexA0", "High mannose", "", "M9Glc1", "1", "LEAACNWTRGERCDLEDR", "29.85", "high mannose glycans", "", "Chinese hamster ovary (CHO) cells", "CVCL_0213", "glycopeptide", "4162.65", "HPLC", "Q-Tof hybrid", "Carboxymethylation | tryptic digest", "", "", "CAD", "MALDI", "The notation ManX, where X ranges from 4 to 9 in the case of the observed tryptic and chymotryptic glycopeptides, indicates that X mannose residues are attached to the chitobiose core (GlcNAc ?(1-4) GlcNAc) | the differences in the number of mannose residues is caused by the slight differences between the E2 glycoprotein batches that were used. The majority of these sites proved to be occupied by high mannose glycans. The relative abundance was determined from deconvoluted mass spectrum over the mass range containing the glycopeptide ions corresponding to glycopeptides with the same amino acid sequence. See glycopeptide sequence reported.", "43509", "39982", "NWT", "NXT" ], [ "P27958-1", "645", "Asn", "G83460ZZ", "N-linked", "protein_xref_unicarbkb", "P27958", "protein_xref_glygen_ds", "GLYDS000335", "", "18187336", "AF009606", "AF009606.1", "AAB66324.1", "polyprotein [Hepatitis C virus subtype 1a]", "Genome polyprotein", "63746", "Hepacivirus C", "Hepatitis C virus subtype 1a (Isolate H)", "263", "GlcNAc", "Hex1Man9", "Hex10HexNAc2", "HexNAc2Hex10dHex0NeuAc0NeuGc0Pent0S0P0KDN0HexA0", "High mannose", "", "M9Glc1", "1", "LEAACNWTRGERCDLEDR", "29.85", "high mannose glycans", "", "Chinese hamster ovary (CHO) cells", "CVCL_0213", "glycopeptide", "4162.65", "HPLC", "Q-Tof hybrid", "Carboxymethylation | tryptic digest", "", "", "CAD", "MALDI", "The notation ManX, where X ranges from 4 to 9 in the case of the observed tryptic and chymotryptic glycopeptides, indicates that X mannose residues are attached to the chitobiose core (GlcNAc ?(1-4) GlcNAc) | the differences in the number of mannose residues is caused by the slight differences between the E2 glycoprotein batches that were used. The majority of these sites proved to be occupied by high mannose glycans. The relative abundance was determined from deconvoluted mass spectrum over the mass range containing the glycopeptide ions corresponding to glycopeptides with the same amino acid sequence. See glycopeptide sequence reported.", "43509", "39982", "NWT", "NXT" ], [ "P27958-1", "645", "Asn", "G58087IP", "N-linked", "protein_xref_pubmed", "18187336", "protein_xref_glygen_ds", "GLYDS000335", "", "18187336", "AF009606", "AF009606.1", "AAB66324.1", "polyprotein [Hepatitis C virus subtype 1a]", "Genome polyprotein", "63746", "Hepacivirus C", "Hepatitis C virus subtype 1a (Isolate H)", "263", "GlcNAc", "Hex2Man9", "Hex11HexNAc2", "HexNAc2Hex11dHex0NeuAc0NeuGc0Pent0S0P0KDN0HexA0", "High mannose", "", "M9Glc2", "0.45", "LEAACNWTRGERCDLEDR", "13.43", "high mannose glycans", "", "Chinese hamster ovary (CHO) cells", "CVCL_0213", "glycopeptide", "4324.748", "HPLC", "Q-Tof hybrid", "Carboxymethylation | tryptic digest", "", "", "CAD", "MALDI", "The notation ManX, where X ranges from 4 to 9 in the case of the observed tryptic and chymotryptic glycopeptides, indicates that X mannose residues are attached to the chitobiose core (GlcNAc ?(1-4) GlcNAc) | the differences in the number of mannose residues is caused by the slight differences between the E2 glycoprotein batches that were used. The majority of these sites proved to be occupied by high mannose glycans. The relative abundance was determined from deconvoluted mass spectrum over the mass range containing the glycopeptide ions corresponding to glycopeptides with the same amino acid sequence. See glycopeptide sequence reported.", "43509", "39982", "NWT", "NXT" ], [ "P27958-1", "645", "Asn", "G58087IP", "N-linked", "protein_xref_glygen_ds", "GLYDS000335", "protein_xref_glygen_ds", "GLYDS000335", "", "18187336", "AF009606", "AF009606.1", "AAB66324.1", "polyprotein [Hepatitis C virus subtype 1a]", "Genome polyprotein", "63746", "Hepacivirus C", "Hepatitis C virus subtype 1a (Isolate H)", "263", "GlcNAc", "Hex2Man9", "Hex11HexNAc2", "HexNAc2Hex11dHex0NeuAc0NeuGc0Pent0S0P0KDN0HexA0", "High mannose", "", "M9Glc2", "0.45", "LEAACNWTRGERCDLEDR", "13.43", "high mannose glycans", "", "Chinese hamster ovary (CHO) cells", "CVCL_0213", "glycopeptide", "4324.748", "HPLC", "Q-Tof hybrid", "Carboxymethylation | tryptic digest", "", "", "CAD", "MALDI", "The notation ManX, where X ranges from 4 to 9 in the case of the observed tryptic and chymotryptic glycopeptides, indicates that X mannose residues are attached to the chitobiose core (GlcNAc ?(1-4) GlcNAc) | the differences in the number of mannose residues is caused by the slight differences between the E2 glycoprotein batches that were used. The majority of these sites proved to be occupied by high mannose glycans. The relative abundance was determined from deconvoluted mass spectrum over the mass range containing the glycopeptide ions corresponding to glycopeptides with the same amino acid sequence. See glycopeptide sequence reported.", "43509", "39982", "NWT", "NXT" ], [ "P27958-1", "645", "Asn", "G58087IP", "N-linked", "protein_xref_unicarbkb", "P27958", "protein_xref_glygen_ds", "GLYDS000335", "", "18187336", "AF009606", "AF009606.1", "AAB66324.1", "polyprotein [Hepatitis C virus subtype 1a]", "Genome polyprotein", "63746", "Hepacivirus C", "Hepatitis C virus subtype 1a (Isolate H)", "263", "GlcNAc", "Hex2Man9", "Hex11HexNAc2", "HexNAc2Hex11dHex0NeuAc0NeuGc0Pent0S0P0KDN0HexA0", "High mannose", "", "M9Glc2", "0.45", "LEAACNWTRGERCDLEDR", "13.43", "high mannose glycans", "", "Chinese hamster ovary (CHO) cells", "CVCL_0213", "glycopeptide", "4324.748", "HPLC", "Q-Tof hybrid", "Carboxymethylation | tryptic digest", "", "", "CAD", "MALDI", "The notation ManX, where X ranges from 4 to 9 in the case of the observed tryptic and chymotryptic glycopeptides, indicates that X mannose residues are attached to the chitobiose core (GlcNAc ?(1-4) GlcNAc) | the differences in the number of mannose residues is caused by the slight differences between the E2 glycoprotein batches that were used. The majority of these sites proved to be occupied by high mannose glycans. The relative abundance was determined from deconvoluted mass spectrum over the mass range containing the glycopeptide ions corresponding to glycopeptides with the same amino acid sequence. See glycopeptide sequence reported.", "43509", "39982", "NWT", "NXT" ], [ "P27958-1", "645", "Asn", "G59324HL", "N-linked", "protein_xref_pubmed", "18187336", "protein_xref_glygen_ds", "GLYDS000335", "", "18187336", "AF009606", "AF009606.1", "AAB66324.1", "polyprotein [Hepatitis C virus subtype 1a]", "Genome polyprotein", "63746", "Hepacivirus C", "Hepatitis C virus subtype 1a (Isolate H)", "263", "GlcNAc", "Hex3Man9", "Hex12HexNAc2", "HexNAc2Hex12dHex0NeuAc0NeuGc0Pent0S0P0KDN0HexA0", "High mannose", "", "M9Glc3", "0.65", "LEAACNWTRGERCDLEDR", "19.4", "high mannose glycans", "", "Chinese hamster ovary (CHO) cells", "CVCL_0213", "glycopeptide", "4486.758", "HPLC", "Q-Tof hybrid", "Carboxymethylation | tryptic digest", "", "", "CAD", "MALDI", "The notation ManX, where X ranges from 4 to 9 in the case of the observed tryptic and chymotryptic glycopeptides, indicates that X mannose residues are attached to the chitobiose core (GlcNAc ?(1-4) GlcNAc) | the differences in the number of mannose residues is caused by the slight differences between the E2 glycoprotein batches that were used. The majority of these sites proved to be occupied by high mannose glycans. The relative abundance was determined from deconvoluted mass spectrum over the mass range containing the glycopeptide ions corresponding to glycopeptides with the same amino acid sequence. See glycopeptide sequence reported.", "43509", "39982", "NWT", "NXT" ], [ "P27958-1", "645", "Asn", "G59324HL", "N-linked", "protein_xref_glygen_ds", "GLYDS000335", "protein_xref_glygen_ds", "GLYDS000335", "", "18187336", "AF009606", "AF009606.1", "AAB66324.1", "polyprotein [Hepatitis C virus subtype 1a]", "Genome polyprotein", "63746", "Hepacivirus C", "Hepatitis C virus subtype 1a (Isolate H)", "263", "GlcNAc", "Hex3Man9", "Hex12HexNAc2", "HexNAc2Hex12dHex0NeuAc0NeuGc0Pent0S0P0KDN0HexA0", "High mannose", "", "M9Glc3", "0.65", "LEAACNWTRGERCDLEDR", "19.4", "high mannose glycans", "", "Chinese hamster ovary (CHO) cells", "CVCL_0213", "glycopeptide", "4486.758", "HPLC", "Q-Tof hybrid", "Carboxymethylation | tryptic digest", "", "", "CAD", "MALDI", "The notation ManX, where X ranges from 4 to 9 in the case of the observed tryptic and chymotryptic glycopeptides, indicates that X mannose residues are attached to the chitobiose core (GlcNAc ?(1-4) GlcNAc) | the differences in the number of mannose residues is caused by the slight differences between the E2 glycoprotein batches that were used. The majority of these sites proved to be occupied by high mannose glycans. The relative abundance was determined from deconvoluted mass spectrum over the mass range containing the glycopeptide ions corresponding to glycopeptides with the same amino acid sequence. See glycopeptide sequence reported.", "43509", "39982", "NWT", "NXT" ], [ "P27958-1", "645", "Asn", "G59324HL", "N-linked", "protein_xref_unicarbkb", "P27958", "protein_xref_glygen_ds", "GLYDS000335", "", "18187336", "AF009606", "AF009606.1", "AAB66324.1", "polyprotein [Hepatitis C virus subtype 1a]", "Genome polyprotein", "63746", "Hepacivirus C", "Hepatitis C virus subtype 1a (Isolate H)", "263", "GlcNAc", "Hex3Man9", "Hex12HexNAc2", "HexNAc2Hex12dHex0NeuAc0NeuGc0Pent0S0P0KDN0HexA0", "High mannose", "", "M9Glc3", "0.65", "LEAACNWTRGERCDLEDR", "19.4", "high mannose glycans", "", "Chinese hamster ovary (CHO) cells", "CVCL_0213", "glycopeptide", "4486.758", "HPLC", "Q-Tof hybrid", "Carboxymethylation | tryptic digest", "", "", "CAD", "MALDI", "The notation ManX, where X ranges from 4 to 9 in the case of the observed tryptic and chymotryptic glycopeptides, indicates that X mannose residues are attached to the chitobiose core (GlcNAc ?(1-4) GlcNAc) | the differences in the number of mannose residues is caused by the slight differences between the E2 glycoprotein batches that were used. The majority of these sites proved to be occupied by high mannose glycans. The relative abundance was determined from deconvoluted mass spectrum over the mass range containing the glycopeptide ions corresponding to glycopeptides with the same amino acid sequence. See glycopeptide sequence reported.", "43509", "39982", "NWT", "NXT" ], [ "P27958-1", "417", "Asn", "G28681TP", "N-linked", "protein_xref_pubmed", "18187336", "protein_xref_glygen_ds", "GLYDS000335", "", "18187336", "AF009606", "AF009606.1", "AAB66324.1", "polyprotein [Hepatitis C virus subtype 1a]", "Genome polyprotein", "63746", "Hepacivirus C", "Hepatitis C virus subtype 1a (Isolate H)", "35", "GlcNAc", "Man3", "Hex3HexNAc2", "HexNAc2Hex3dHex0NeuAc0NeuGc0Pent0S0P0KDN0HexA0", "High mannose", "", "M3", "0.5", "INTNGSW", "12.08", "high mannose glycans", "", "Chinese hamster ovary (CHO) cells", "CVCL_0213", "glycopeptide", "1682.676", "HPLC", "Q-Tof hybrid", "Carboxymethylation |chymotryptic digest", "", "", "CAD", "MALDI", "The notation ManX, where X ranges from 4 to 9 in the case of the observed tryptic and chymotryptic glycopeptides, indicates that X mannose residues are attached to the chitobiose core (GlcNAc ?(1-4) GlcNAc) | the differences in the number of mannose residues is caused by the slight differences between the E2 glycoprotein batches that were used. | the majority of these sites proved to be occupied by high mannose glycans. The relative abundance was determined from deconvoluted mass spectrum over the mass range containing the glycopeptide ions corresponding to glycopeptides with the same amino acid sequence. See glycopeptide sequence reported.", "43509", "39982", "NGS", "NXS" ], [ "P27958-1", "417", "Asn", "G28681TP", "N-linked", "protein_xref_glygen_ds", "GLYDS000335", "protein_xref_glygen_ds", "GLYDS000335", "", "18187336", "AF009606", "AF009606.1", "AAB66324.1", "polyprotein [Hepatitis C virus subtype 1a]", "Genome polyprotein", "63746", "Hepacivirus C", "Hepatitis C virus subtype 1a (Isolate H)", "35", "GlcNAc", "Man3", "Hex3HexNAc2", "HexNAc2Hex3dHex0NeuAc0NeuGc0Pent0S0P0KDN0HexA0", "High mannose", "", "M3", "0.5", "INTNGSW", "12.08", "high mannose glycans", "", "Chinese hamster ovary (CHO) cells", "CVCL_0213", "glycopeptide", "1682.676", "HPLC", "Q-Tof hybrid", "Carboxymethylation |chymotryptic digest", "", "", "CAD", "MALDI", "The notation ManX, where X ranges from 4 to 9 in the case of the observed tryptic and chymotryptic glycopeptides, indicates that X mannose residues are attached to the chitobiose core (GlcNAc ?(1-4) GlcNAc) | the differences in the number of mannose residues is caused by the slight differences between the E2 glycoprotein batches that were used. | the majority of these sites proved to be occupied by high mannose glycans. The relative abundance was determined from deconvoluted mass spectrum over the mass range containing the glycopeptide ions corresponding to glycopeptides with the same amino acid sequence. See glycopeptide sequence reported.", "43509", "39982", "NGS", "NXS" ], [ "P27958-1", "417", "Asn", "G28681TP", "N-linked", "protein_xref_unicarbkb", "P27958", "protein_xref_glygen_ds", "GLYDS000335", "", "18187336", "AF009606", "AF009606.1", "AAB66324.1", "polyprotein [Hepatitis C virus subtype 1a]", "Genome polyprotein", "63746", "Hepacivirus C", "Hepatitis C virus subtype 1a (Isolate H)", "35", "GlcNAc", "Man3", "Hex3HexNAc2", "HexNAc2Hex3dHex0NeuAc0NeuGc0Pent0S0P0KDN0HexA0", "High mannose", "", "M3", "0.5", "INTNGSW", "12.08", "high mannose glycans", "", "Chinese hamster ovary (CHO) cells", "CVCL_0213", "glycopeptide", "1682.676", "HPLC", "Q-Tof hybrid", "Carboxymethylation |chymotryptic digest", "", "", "CAD", "MALDI", "The notation ManX, where X ranges from 4 to 9 in the case of the observed tryptic and chymotryptic glycopeptides, indicates that X mannose residues are attached to the chitobiose core (GlcNAc ?(1-4) GlcNAc) | the differences in the number of mannose residues is caused by the slight differences between the E2 glycoprotein batches that were used. | the majority of these sites proved to be occupied by high mannose glycans. The relative abundance was determined from deconvoluted mass spectrum over the mass range containing the glycopeptide ions corresponding to glycopeptides with the same amino acid sequence. See glycopeptide sequence reported.", "43509", "39982", "NGS", "NXS" ], [ "P27958-1", "417", "Asn", "G92050GC", "N-linked", "protein_xref_pubmed", "18187336", "protein_xref_glygen_ds", "GLYDS000335", "", "18187336", "AF009606", "AF009606.1", "AAB66324.1", "polyprotein [Hepatitis C virus subtype 1a]", "Genome polyprotein", "63746", "Hepacivirus C", "Hepatitis C virus subtype 1a (Isolate H)", "35", "GlcNAc", "Man4", "Hex4HexNAc2", "HexNAc2Hex4dHex0NeuAc0NeuGc0Pent0S0P0KDN0HexA0", "High mannose", "", "M4", "0.95", "INTNGSW", "22.95", "high mannose glycans", "", "Chinese hamster ovary (CHO) cells", "CVCL_0213", "glycopeptide", "1845.732", "HPLC", "Q-Tof hybrid", "Carboxymethylation |chymotryptic digest", "", "", "CAD", "MALDI", "The notation ManX, where X ranges from 4 to 9 in the case of the observed tryptic and chymotryptic glycopeptides, indicates that X mannose residues are attached to the chitobiose core (GlcNAc ?(1-4) GlcNAc) | the differences in the number of mannose residues is caused by the slight differences between the E2 glycoprotein batches that were used. | the majority of these sites proved to be occupied by high mannose glycans. The relative abundance was determined from deconvoluted mass spectrum over the mass range containing the glycopeptide ions corresponding to glycopeptides with the same amino acid sequence. See glycopeptide sequence reported.", "43509", "39982", "NGS", "NXS" ], [ "P27958-1", "417", "Asn", "G92050GC", "N-linked", "protein_xref_glygen_ds", "GLYDS000335", "protein_xref_glygen_ds", "GLYDS000335", "", "18187336", "AF009606", "AF009606.1", "AAB66324.1", "polyprotein [Hepatitis C virus subtype 1a]", "Genome polyprotein", "63746", "Hepacivirus C", "Hepatitis C virus subtype 1a (Isolate H)", "35", "GlcNAc", "Man4", "Hex4HexNAc2", "HexNAc2Hex4dHex0NeuAc0NeuGc0Pent0S0P0KDN0HexA0", "High mannose", "", "M4", "0.95", "INTNGSW", "22.95", "high mannose glycans", "", "Chinese hamster ovary (CHO) cells", "CVCL_0213", "glycopeptide", "1845.732", "HPLC", "Q-Tof hybrid", "Carboxymethylation |chymotryptic digest", "", "", "CAD", "MALDI", "The notation ManX, where X ranges from 4 to 9 in the case of the observed tryptic and chymotryptic glycopeptides, indicates that X mannose residues are attached to the chitobiose core (GlcNAc ?(1-4) GlcNAc) | the differences in the number of mannose residues is caused by the slight differences between the E2 glycoprotein batches that were used. | the majority of these sites proved to be occupied by high mannose glycans. The relative abundance was determined from deconvoluted mass spectrum over the mass range containing the glycopeptide ions corresponding to glycopeptides with the same amino acid sequence. See glycopeptide sequence reported.", "43509", "39982", "NGS", "NXS" ], [ "P27958-1", "417", "Asn", "G92050GC", "N-linked", "protein_xref_unicarbkb", "P27958", "protein_xref_glygen_ds", "GLYDS000335", "", "18187336", "AF009606", "AF009606.1", "AAB66324.1", "polyprotein [Hepatitis C virus subtype 1a]", "Genome polyprotein", "63746", "Hepacivirus C", "Hepatitis C virus subtype 1a (Isolate H)", "35", "GlcNAc", "Man4", "Hex4HexNAc2", "HexNAc2Hex4dHex0NeuAc0NeuGc0Pent0S0P0KDN0HexA0", "High mannose", "", "M4", "0.95", "INTNGSW", "22.95", "high mannose glycans", "", "Chinese hamster ovary (CHO) cells", "CVCL_0213", "glycopeptide", "1845.732", "HPLC", "Q-Tof hybrid", "Carboxymethylation |chymotryptic digest", "", "", "CAD", "MALDI", "The notation ManX, where X ranges from 4 to 9 in the case of the observed tryptic and chymotryptic glycopeptides, indicates that X mannose residues are attached to the chitobiose core (GlcNAc ?(1-4) GlcNAc) | the differences in the number of mannose residues is caused by the slight differences between the E2 glycoprotein batches that were used. | the majority of these sites proved to be occupied by high mannose glycans. The relative abundance was determined from deconvoluted mass spectrum over the mass range containing the glycopeptide ions corresponding to glycopeptides with the same amino acid sequence. See glycopeptide sequence reported.", "43509", "39982", "NGS", "NXS" ] ] }, "readme": "Name\n - HCV1a Glycosylation Sites (Literature + UniCarbKB)\n\nVersion\n - 1.8.24\n\nCreated on\n - 2020-02-10T14:13:38.047090\n\nModified on\n - 2020-05-04T10:54:34.390088\n\nCreated by\n - Rahi Navelkar [rsn13@gwu.edu], Jeet Vora [jeetvora@gwu.edu], Robel Kahsay [rykahsay@gwu.edu]\n\nAuthors\n - Rahi Navelkar [rsn13@gwu.edu], Matthew Campbell [m.campbell2@griffith.edu.au]\n\nChecksum\n - \n\nUsability Domain\n - The HCV1a [TaxID:1108] glycosylations sites dataset contains glycosylation sites experimentally reported on Hepatitis C Virus 1a protein. The data was extracted from publication PMID:18187336. (Iacob RE, Perdivara I, Przybylski M, Tomer KB. Mass spectrometric characterization of glycosylation of hepatitis C virus E2 envelope glycoprotein reveals extended microheterogeneity of N-glycans. J Am Soc Mass Spectrom. 2008;19(3):428\u2013444. doi:10.1016/j.jasms.2007.11.022). The glycan compositions from publication [PMID:18187336] were assigned to GlyTouCan accessions by UniCarbKB. [https://academic.oup.com/nar/article/42/D1/D215/1052197 ,https://doi.org/10.1093/nar/gkt1128]\n\nDescription Domain\n Keywords\n - reported glycosylation\n - HCV\n\n Pipeline Steps\n - Step-1: 1) The data was extracted from the publications using supplemental material (Table 1,2,3). 2) The GenBank accession number (AF009606) retrieved from the paper was matched to the best hit UniProtKB Ac. (P27958) using the NCBI BLAST. 3) The glycan compositions provided by the paper were mapped to GlyTouCan Accession manually. 4) The source cell-line and mass-spectrometry data such as analyzer, chromatography, etc. were also extracted from the paper. 5) QC checks mapped the UniProtKB accessions to UniProtKB canonical accessions and checked the validity of amino acid and glycosite position on the .fasta sequence of the 2019-09 UniProtKB release for that protein.\n\nExecution Domain\n Scripts - https://github.com/GW-HIVE/glygen-backend-integration/blob/master/pipeline/integrator/make-proteoform-dataset.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: hcv1a_proteoform_glycosylation_sites_literature.csv\n URI: https://data.glygen.org/ln2data/releases/data/v-1.8.24/source/hcv1a_proteoform_glycosylation_sites_literature.csv\n Name: hcv1a_protein_masterlist.csv\n URI: https://data.glygen.org/ln2data/releases/data/v-1.8.24/reviewed/hcv1a_protein_masterlist.csv\n Name: hcv_protein_canonicalsequences.fasta\n URI: https://data.glygen.org/ln2data/releases/data/v-1.8.24/reviewed/hcv_protein_canonicalsequences.fasta\n Output Subdomain\n Name: hcv1a_proteoform_glycosylation_sites_literature.csv\n URI: http://data.glygen.org/ln2data/releases/data/v-1.8.24/reviewed/hcv1a_proteoform_glycosylation_sites_literature.csv\n Name: hcv1a_proteoform_glycosylation_sites_literature.stat.csv\n URI: http://data.glygen.org/ln2data/releases/data/v-1.8.24/reviewed/hcv1a_proteoform_glycosylation_sites_literature.stat.csv\n\nFields\n Name: \"src_xref_key\"\n Description: \"Source Xref key\"\n Unique Values: \"1\"\n Name: \"xref_id\"\n Description: \"ID of the X-ref\"\n Unique Values: \"119\"\n Name: \"title\"\n Description: \"Title of the published article in the journal\"\n Unique Values: \"119\"\n Name: \"src_xref_id\"\n Description: \"Source X-ref ID\"\n Unique Values: \"120\"\n Name: \"journal_name\"\n Description: \"The name of the journal in which the article is published\"\n Unique Values: \"49\"\n Name: \"authors\"\n Description: \"NA\"\n Unique Values: \"118\"\n Name: \"publication_date\"\n Description: \"Contains the full date on which the issue of the journal was published. Sourced from MEDLINE/PubMed data element(fields) description.\"\n Unique Values: \"117\"\n Name: \"glytoucan_ac\"\n Description: \"Unique accession assigned to the registered glycan structure in GlyTouCan database\"\n Unique Values: \"115\"\n Name: \"xref_key\"\n Description: \"Source key associated to the xref_id\"\n Unique Values: \"1\"", "downloadurl": "/ln2data/releases/data/v-1.8.24/reviewed/hcv1a_proteoform_glycosylation_sites_literature.csv" }