{ "bcoid": "GLY_000274", "title": "Human Phosphorylation Sites (UniProtKB)", "description": "The Human Phosphorylation Sites (UniProtKB) dataset contains human [taxid:9606] UniProtKB canonical accessions ...", "filename": "human_proteoform_phosphorylation_sites_uniprotkb.csv", "filetype": "csv", "categories": { "species": "Homo sapiens", "molecule": "Proteoform", "tags": "Phosphorylation Sites", "file_type": "csv", "status": "Reviewed", "scope": "internal" }, "minitable": { "content": [ [ "O60716-1...", "910..." ], [ "O60716-1...", "910..." ] ], "headers": [ "uniprotkb_ca...", "phosphorylat..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "uniprotkb_canonical_ac" }, { "type": "string", "label": "phosphorylation_site_uniprotkb" }, { "type": "string", "label": "amino_acid" }, { "type": "string", "label": "kinase_uniprotkb_canonical_ac" }, { "type": "string", "label": "kinase_gene_name" }, { "type": "string", "label": "xref_key" }, { "type": "string", "label": "xref_id" }, { "type": "string", "label": "src_xref_key" }, { "type": "string", "label": "src_xref_id" }, { "type": "string", "label": "phosphorylated_residue" }, { "type": "string", "label": "phosphorylation_annotation" }, { "type": "string", "label": "eco_id" } ], [ "O60716-1", "910", "Thr", "", "", "protein_xref_uniprotkb", "O60716", "protein_xref_uniprotkb", "O60716", "Phosphothreonine", "Phosphothreonine", "" ], [ "O60716-1", "910", "Thr", "", "", "protein_xref_uniprotkb", "O60716", "protein_xref_uniprotkb", "O60716", "Phosphothreonine", "Phosphothreonine", "" ], [ "O60716-1", "713", "Ser", "", "", "protein_xref_uniprotkb", "O60716", "protein_xref_uniprotkb", "O60716", "Phosphoserine", "Phosphoserine", "" ], [ "O60716-1", "713", "Ser", "", "", "protein_xref_uniprotkb", "O60716", "protein_xref_uniprotkb", "O60716", "Phosphoserine", "Phosphoserine", "" ], [ "O60716-1", "566", "Thr", "", "", "protein_xref_uniprotkb", "O60716", "protein_xref_uniprotkb", "O60716", "Phosphothreonine", "Phosphothreonine", "" ], [ "O60716-1", "566", "Thr", "", "", "protein_xref_uniprotkb", "O60716", "protein_xref_uniprotkb", "O60716", "Phosphothreonine", "Phosphothreonine", "" ], [ "O60716-1", "228", "Tyr", "", "", "protein_xref_uniprotkb", "O60716", "protein_xref_uniprotkb", "O60716", "Phosphotyrosine", "Phosphotyrosine", "" ], [ "O60716-1", "228", "Tyr", "", "", "protein_xref_uniprotkb", "O60716", "protein_xref_uniprotkb", "O60716", "Phosphotyrosine", "Phosphotyrosine", "" ], [ "O60716-1", "899", "Ser", "", "", "protein_xref_uniprotkb", "O60716", "protein_xref_uniprotkb", "O60716", "Phosphoserine", "Phosphoserine", "" ], [ "O60716-1", "899", "Ser", "", "", "protein_xref_uniprotkb", "O60716", "protein_xref_uniprotkb", "O60716", "Phosphoserine", "Phosphoserine", "" ], [ "O60716-1", "291", "Tyr", "", "", "protein_xref_uniprotkb", "O60716", "protein_xref_uniprotkb", "O60716", "Phosphotyrosine", "Phosphotyrosine", "" ], [ "O60716-1", "291", "Tyr", "", "", "protein_xref_uniprotkb", "O60716", "protein_xref_uniprotkb", "O60716", "Phosphotyrosine", "Phosphotyrosine", "" ], [ "O60716-1", "304", "Thr", "", "", "protein_xref_uniprotkb", "O60716", "protein_xref_uniprotkb", "O60716", "Phosphothreonine", "Phosphothreonine", "" ], [ "O60716-1", "304", "Thr", "", "", "protein_xref_uniprotkb", "O60716", "protein_xref_uniprotkb", "O60716", "Phosphothreonine", "Phosphothreonine", "" ], [ "O60716-1", "217", "Tyr", "", "", "protein_xref_uniprotkb", "O60716", "protein_xref_uniprotkb", "O60716", "Phosphotyrosine", "Phosphotyrosine", "" ], [ "O60716-1", "217", "Tyr", "", "", "protein_xref_uniprotkb", "O60716", "protein_xref_uniprotkb", "O60716", "Phosphotyrosine", "Phosphotyrosine", "" ], [ "O60716-1", "257", "Tyr", "", "", "protein_xref_uniprotkb", "O60716", "protein_xref_uniprotkb", "O60716", "Phosphotyrosine", "Phosphotyrosine", "" ], [ "O60716-1", "257", "Tyr", "", "", "protein_xref_uniprotkb", "O60716", "protein_xref_uniprotkb", "O60716", "Phosphotyrosine", "Phosphotyrosine", "" ], [ "O60716-1", "788", "Thr", "", "", "protein_xref_uniprotkb", "O60716", "protein_xref_uniprotkb", "O60716", "Phosphothreonine", "Phosphothreonine", "" ], [ "O60716-1", "788", "Thr", "", "", "protein_xref_uniprotkb", "O60716", "protein_xref_uniprotkb", "O60716", "Phosphothreonine", "Phosphothreonine", "" ], [ "O60716-1", "280", "Tyr", "", "", "protein_xref_uniprotkb", "O60716", "protein_xref_uniprotkb", "O60716", "Phosphotyrosine", "Phosphotyrosine", "" ], [ "O60716-1", "280", "Tyr", "", "", "protein_xref_uniprotkb", "O60716", "protein_xref_uniprotkb", "O60716", "Phosphotyrosine", "Phosphotyrosine", "" ], [ "O60716-1", "904", "Tyr", "", "", "protein_xref_uniprotkb", "O60716", "protein_xref_uniprotkb", "O60716", "Phosphotyrosine", "Phosphotyrosine", "" ], [ "O60716-1", "904", "Tyr", "", "", "protein_xref_uniprotkb", "O60716", "protein_xref_uniprotkb", "O60716", "Phosphotyrosine", "Phosphotyrosine", "" ], [ "O60716-1", "300", "Ser", "", "", "protein_xref_uniprotkb", "O60716", "protein_xref_uniprotkb", "O60716", "Phosphoserine", "Phosphoserine", "" ], [ "O60716-1", "300", "Ser", "", "", "protein_xref_uniprotkb", "O60716", "protein_xref_uniprotkb", "O60716", "Phosphoserine", "Phosphoserine", "" ], [ "O60716-1", "856", "Thr", "", "", "protein_xref_uniprotkb", "O60716", "protein_xref_uniprotkb", "O60716", "Phosphothreonine", "Phosphothreonine", "" ], [ "O60716-1", "856", "Thr", "", "", "protein_xref_uniprotkb", "O60716", "protein_xref_uniprotkb", "O60716", "Phosphothreonine", "Phosphothreonine", "" ], [ "O60716-1", "809", "Thr", "", "", "protein_xref_uniprotkb", "O60716", "protein_xref_uniprotkb", "O60716", "Phosphothreonine", "Phosphothreonine", "" ], [ "O60716-1", "809", "Thr", "", "", "protein_xref_uniprotkb", "O60716", "protein_xref_uniprotkb", "O60716", "Phosphothreonine", "Phosphothreonine", "" ], [ "O60716-1", "221", "Tyr", "", "", "protein_xref_uniprotkb", "O60716", "protein_xref_uniprotkb", "O60716", "Phosphotyrosine", "Phosphotyrosine", "" ], [ "O60716-1", "221", "Tyr", "", "", "protein_xref_uniprotkb", "O60716", "protein_xref_uniprotkb", "O60716", "Phosphotyrosine", "Phosphotyrosine", "" ], [ "O96004-1", "109", "Ser", "", "", "protein_xref_uniprotkb", "O96004", "protein_xref_uniprotkb", "O96004", "Phosphoserine", "Phosphoserine; by PLK4", "" ], [ "O96004-1", "109", "Ser", "", "", "protein_xref_uniprotkb", "O96004", "protein_xref_uniprotkb", "O96004", "Phosphoserine", "Phosphoserine; by PLK4", "" ], [ "O96004-1", "107", "Thr", "", "", "protein_xref_uniprotkb", "O96004", "protein_xref_uniprotkb", "O96004", "Phosphothreonine", "Phosphothreonine; by PLK4", "" ], [ "O96004-1", "107", "Thr", "", "", "protein_xref_uniprotkb", "O96004", "protein_xref_uniprotkb", "O96004", "Phosphothreonine", "Phosphothreonine; by PLK4", "" ], [ "P55209-1", "64", "Thr", "", "", "protein_xref_uniprotkb", "P55209", "protein_xref_uniprotkb", "P55209", "Phosphothreonine", "Phosphothreonine", "" ], [ "P55209-1", "64", "Thr", "", "", "protein_xref_uniprotkb", "P55209", "protein_xref_uniprotkb", "P55209", "Phosphothreonine", "Phosphothreonine", "" ], [ "P49585-1", "329", "Ser", "", "", "protein_xref_uniprotkb", "P49585", "protein_xref_uniprotkb", "P49585", "Phosphoserine", "Phosphoserine", "" ], [ "P49585-1", "329", "Ser", "", "", "protein_xref_uniprotkb", "P49585", "protein_xref_uniprotkb", "P49585", "Phosphoserine", "Phosphoserine", "" ], [ "P49585-1", "321", "Ser", "", "", "protein_xref_uniprotkb", "P49585", "protein_xref_uniprotkb", "P49585", "Phosphoserine", "Phosphoserine", "" ], [ "P49585-1", "321", "Ser", "", "", "protein_xref_uniprotkb", "P49585", "protein_xref_uniprotkb", "P49585", "Phosphoserine", "Phosphoserine", "" ], [ "P49585-1", "323", "Ser", "", "", "protein_xref_uniprotkb", "P49585", "protein_xref_uniprotkb", "P49585", "Phosphoserine", "Phosphoserine", "" ], [ "P49585-1", "323", "Ser", "", "", "protein_xref_uniprotkb", "P49585", "protein_xref_uniprotkb", "P49585", "Phosphoserine", "Phosphoserine", "" ], [ "P49585-1", "322", "Ser", "", "", "protein_xref_uniprotkb", "P49585", "protein_xref_uniprotkb", "P49585", "Phosphoserine", "Phosphoserine", "" ], [ "P49585-1", "322", "Ser", "", "", "protein_xref_uniprotkb", "P49585", "protein_xref_uniprotkb", "P49585", "Phosphoserine", "Phosphoserine", "" ], [ "P49585-1", "333", "Ser", "", "", "protein_xref_uniprotkb", "P49585", "protein_xref_uniprotkb", "P49585", "Phosphoserine", "Phosphoserine", "" ], [ "P49585-1", "333", "Ser", "", "", "protein_xref_uniprotkb", "P49585", "protein_xref_uniprotkb", "P49585", "Phosphoserine", "Phosphoserine", "" ], [ "P49585-1", "325", "Thr", "", "", "protein_xref_uniprotkb", "P49585", "protein_xref_uniprotkb", "P49585", "Phosphothreonine", "Phosphothreonine", "" ], [ "P49585-1", "325", "Thr", "", "", "protein_xref_uniprotkb", "P49585", "protein_xref_uniprotkb", "P49585", "Phosphothreonine", "Phosphothreonine", "" ], [ "Q9Y2R2-1", "635", "Ser", "", "", "protein_xref_uniprotkb", "Q9Y2R2", "protein_xref_uniprotkb", "Q9Y2R2", "Phosphoserine", "Phosphoserine", "" ], [ "Q9Y2R2-1", "635", "Ser", "", "", "protein_xref_uniprotkb", "Q9Y2R2", "protein_xref_uniprotkb", "Q9Y2R2", "Phosphoserine", "Phosphoserine", "" ], [ "Q9Y2R2-1", "684", "Ser", "", "", "protein_xref_uniprotkb", "Q9Y2R2", "protein_xref_uniprotkb", "Q9Y2R2", "Phosphoserine", "Phosphoserine", "" ], [ "Q9Y2R2-1", "684", "Ser", "", "", "protein_xref_uniprotkb", "Q9Y2R2", "protein_xref_uniprotkb", "Q9Y2R2", "Phosphoserine", "Phosphoserine", "" ], [ "Q9Y2R2-1", "692", "Ser", "", "", "protein_xref_uniprotkb", "Q9Y2R2", "protein_xref_uniprotkb", "Q9Y2R2", "Phosphoserine", "Phosphoserine", "" ], [ "Q9Y2R2-1", "692", "Ser", "", "", "protein_xref_uniprotkb", "Q9Y2R2", "protein_xref_uniprotkb", "Q9Y2R2", "Phosphoserine", "Phosphoserine", "" ], [ "Q9Y6R1-1", "1026", "Ser", "", "", "protein_xref_uniprotkb", "Q9Y6R1", "protein_xref_uniprotkb", "Q9Y6R1", "Phosphoserine", "Phosphoserine; by PKA", "" ], [ "Q9Y6R1-1", "1026", "Ser", "", "", "protein_xref_uniprotkb", "Q9Y6R1", "protein_xref_uniprotkb", "Q9Y6R1", "Phosphoserine", "Phosphoserine; by PKA", "" ], [ "P07550-1", "346", "Ser", "", "", "protein_xref_uniprotkb", "P07550", "protein_xref_uniprotkb", "P07550", "Phosphoserine", "Phosphoserine; by PKA", "" ], [ "P07550-1", "346", "Ser", "", "", "protein_xref_uniprotkb", "P07550", "protein_xref_uniprotkb", "P07550", "Phosphoserine", "Phosphoserine; by PKA", "" ], [ "P07550-1", "345", "Ser", "", "", "protein_xref_uniprotkb", "P07550", "protein_xref_uniprotkb", "P07550", "Phosphoserine", "Phosphoserine; by PKA", "" ], [ "P07550-1", "345", "Ser", "", "", "protein_xref_uniprotkb", "P07550", "protein_xref_uniprotkb", "P07550", "Phosphoserine", "Phosphoserine; by PKA", "" ], [ "O14757-1", "317", "Ser", "", "", "protein_xref_uniprotkb", "O14757", "protein_xref_uniprotkb", "O14757", "Phosphoserine", "Phosphoserine; by ATM and ATR", "" ], [ "O14757-1", "317", "Ser", "", "", "protein_xref_uniprotkb", "O14757", "protein_xref_uniprotkb", "O14757", "Phosphoserine", "Phosphoserine; by ATM and ATR", "" ], [ "O14757-1", "345", "Ser", "", "", "protein_xref_uniprotkb", "O14757", "protein_xref_uniprotkb", "O14757", "Phosphoserine", "Phosphoserine; by ATM and ATR", "" ], [ "O14757-1", "345", "Ser", "", "", "protein_xref_uniprotkb", "O14757", "protein_xref_uniprotkb", "O14757", "Phosphoserine", "Phosphoserine; by ATM and ATR", "" ], [ "P06730-1", "209", "Ser", "", "", "protein_xref_uniprotkb", "P06730", "protein_xref_uniprotkb", "P06730", "Phosphoserine", "Phosphoserine; by PKC and MKNK2", "" ], [ "P06730-1", "209", "Ser", "", "", "protein_xref_uniprotkb", "P06730", "protein_xref_uniprotkb", "P06730", "Phosphoserine", "Phosphoserine; by PKC and MKNK2", "" ], [ "E9PAV3-1", "43", "Ser", "", "", "protein_xref_uniprotkb", "Q13765", "protein_xref_uniprotkb", "Q13765", "Phosphoserine", "Phosphoserine; by ILK1", "" ], [ "E9PAV3-1", "43", "Ser", "", "", "protein_xref_uniprotkb", "Q13765", "protein_xref_uniprotkb", "Q13765", "Phosphoserine", "Phosphoserine; by ILK1", "" ], [ "Q7Z6L0-1", "248", "Ser", "", "", "protein_xref_uniprotkb", "Q7Z6L0", "protein_xref_uniprotkb", "Q7Z6L0", "Phosphoserine", "Phosphoserine", "" ], [ "Q7Z6L0-1", "248", "Ser", "", "", "protein_xref_uniprotkb", "Q7Z6L0", "protein_xref_uniprotkb", "Q7Z6L0", "Phosphoserine", "Phosphoserine", "" ], [ "Q7Z6L0-1", "74", "Thr", "", "", "protein_xref_uniprotkb", "Q7Z6L0", "protein_xref_uniprotkb", "Q7Z6L0", "Phosphothreonine", "Phosphothreonine", "" ], [ "Q7Z6L0-1", "74", "Thr", "", "", "protein_xref_uniprotkb", "Q7Z6L0", "protein_xref_uniprotkb", "Q7Z6L0", "Phosphothreonine", "Phosphothreonine", "" ], [ "Q7Z6L0-1", "249", "Ser", "", "", "protein_xref_uniprotkb", "Q7Z6L0", "protein_xref_uniprotkb", "Q7Z6L0", "Phosphoserine", "Phosphoserine", "" ], [ "Q7Z6L0-1", "249", "Ser", "", "", "protein_xref_uniprotkb", "Q7Z6L0", "protein_xref_uniprotkb", "Q7Z6L0", "Phosphoserine", "Phosphoserine", "" ], [ "Q7Z6L0-1", "28", "Ser", "", "", "protein_xref_uniprotkb", "Q7Z6L0", "protein_xref_uniprotkb", "Q7Z6L0", "Phosphoserine", "Phosphoserine", "" ], [ "Q7Z6L0-1", "28", "Ser", "", "", "protein_xref_uniprotkb", "Q7Z6L0", "protein_xref_uniprotkb", "Q7Z6L0", "Phosphoserine", "Phosphoserine", "" ], [ "P24928-1", "1840", "Thr", "", "", "protein_xref_uniprotkb", "P24928", "protein_xref_uniprotkb", "P24928", "Phosphothreonine", "Phosphothreonine", "" ], [ "P24928-1", "1840", "Thr", "", "", "protein_xref_uniprotkb", "P24928", "protein_xref_uniprotkb", "P24928", "Phosphothreonine", "Phosphothreonine", "" ], [ "P24928-1", "1867", "Tyr", "", "", "protein_xref_uniprotkb", "P24928", "protein_xref_uniprotkb", "P24928", "Phosphotyrosine", "Phosphotyrosine", "" ], [ "P24928-1", "1867", "Tyr", "", "", "protein_xref_uniprotkb", "P24928", "protein_xref_uniprotkb", "P24928", "Phosphotyrosine", "Phosphotyrosine", "" ], [ "P24928-1", "1845", "Ser", "", "", "protein_xref_uniprotkb", "P24928", "protein_xref_uniprotkb", "P24928", "Phosphoserine", "Phosphoserine", "" ], [ "P24928-1", "1845", "Ser", "", "", "protein_xref_uniprotkb", "P24928", "protein_xref_uniprotkb", "P24928", "Phosphoserine", "Phosphoserine", "" ] ] }, "readme": "Name\n - Human Phosphorylation Sites (UniProtKB)\n\nVersion\n - 1.8.24\n\nCreated on\n - 2019-09-06T14:06:39.000407\n\nModified on\n - 2020-04-10T11:46:19.167448\n\nCreated by\n - Jeet Vora [jeetvora@gwu.edu], Rahi Navelkar [rsn13@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Xavier Holmes [xavierh@email.gwu.edu]\n\nAuthors\n - Maria Martin [martin@ebi.ac.uk], Preethi Vasudev [pvasudev@ebi.ac.uk]\n\nChecksum\n - \n\nUsability Domain\n - The Human Phosphorylation Sites (UniProtKB) dataset contains human [taxid:9606] UniProtKB canonical accessions with information on reported and predicted phosphoryation sites with evidence in UniProtKB database. The dataset is derived from 2019-09 UniProtKB release. If you use this dataset please provide proper attribution to EMBL-EBI-UniProtKB and GlyGen\n\nDescription Domain\n Keywords\n - phosphoryation Sites\n - ptm processing\n - UniProtKB\n\n Pipeline Steps\n - Step-1: The script loads the phosphorylation information from the triplestore conatining triples from the nt file and extracts as a csv dataset\n\nExecution Domain\n Scripts - https://github.com/GW-HIVE/glygen-backend-integration/blob/master/pipeline/integrator/make-proteoform-dataset.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: uniprot-proteome-homo-sapiens.nt\n URI: https://data.glygen.org/ln2data/releases/data/v-1.8.24/source/uniprot-proteome-homo-sapiens.nt\n Name: human_protein_masterlist.csv\n URI: https://data.glygen.org/ln2data/releases/data/v-1.8.24/reviewed/human_protein_masterlist.csv\n Output Subdomain\n Name: human_proteoform_phosphorylation_sites_uniprotkb.csv\n URI: http://data.glygen.org/ln2data/releases/data/v-1.8.24/reviewed/human_proteoform_phosphorylation_sites_uniprotkb.csv\n Name: human_proteoform_phosphorylation_sites_uniprotkb.stat.csv\n URI: http://data.glygen.org/ln2data/releases/data/v-1.8.24/reviewed/human_proteoform_phosphorylation_sites_uniprotkb.stat.csv\n\nFields\n Name: \"src_xref_key\"\n Description: \"Source Xref key\"\n Unique Values: \"1\"\n Name: \"xref_id\"\n Description: \"ID of the X-ref\"\n Unique Values: \"119\"\n Name: \"title\"\n Description: \"Title of the published article in the journal\"\n Unique Values: \"119\"\n Name: \"src_xref_id\"\n Description: \"Source X-ref ID\"\n Unique Values: \"120\"\n Name: \"journal_name\"\n Description: \"The name of the journal in which the article is published\"\n Unique Values: \"49\"\n Name: \"authors\"\n Description: \"NA\"\n Unique Values: \"118\"\n Name: \"publication_date\"\n Description: \"Contains the full date on which the issue of the journal was published. Sourced from MEDLINE/PubMed data element(fields) description.\"\n Unique Values: \"117\"\n Name: \"glytoucan_ac\"\n Description: \"Unique accession assigned to the registered glycan structure in GlyTouCan database\"\n Unique Values: \"115\"\n Name: \"xref_key\"\n Description: \"Source key associated to the xref_id\"\n Unique Values: \"1\"", "downloadurl": "/ln2data/releases/data/v-1.8.24/reviewed/human_proteoform_phosphorylation_sites_uniprotkb.csv" }