{ "bcoid": "GLY_000265", "title": "Rat Protein Alternative Name (UniProtKB)", "description": "The Rat Protein Alternative Name (UniProtKB) dataset contains UniProtKB alternative names for rat [taxid:10116] ...", "filename": "rat_protein_altnames.csv", "filetype": "csv", "categories": { "species": "Rattus norvegicus", "molecule": "Protein", "tags": "Protein Alternative Names", "file_type": "csv", "status": "Reviewed", "scope": "internal" }, "minitable": { "content": [ [ "Q5RJK3-1...", "tRNA (guanin..." ], [ "Q5RJK3-1...", "RNA (guanine..." ] ], "headers": [ "uniprotkb_ca...", "alternative_..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "uniprotkb_canonical_ac" }, { "type": "string", "label": "alternative_name_full" }, { "type": "string", "label": "alternative_name_short" }, { "type": "string", "label": "ec_name" } ], [ "Q5RJK3-1", "tRNA (guanine(9)-N(1))-methyltransferase TRMT10B", "", "" ], [ "Q5RJK3-1", "RNA (guanine-9-)-methyltransferase domain-containing protein 3", "", "" ], [ "P30349-1", "Leukotriene A(4) hydrolase", "", "" ], [ "P30349-1", "Tripeptide aminopeptidase LTA4H", "", "3.4.11.4" ], [ "Q6MG55-1", "Monoacylglycerol lipase ABHD16A", "", "3.1.1.23" ], [ "Q6MG55-1", "Alpha/beta hydrolase domain-containing protein 16A", "Abhydrolase domain-containing protein 16A", "" ], [ "Q6MG55-1", "HLA-B-associated transcript 5 homolog", "", "" ], [ "P20961-1", "Endothelial plasminogen activator inhibitor", "", "" ], [ "P20961-1", "Serpin E1", "", "" ], [ "Q6MG59-1", "Protein G6b", "", "" ], [ "Q4KLP0-1", "Dehydrogenase E1 and transketolase domain-containing protein 1", "", "" ], [ "P34997-1", "Neurolymphatic receptor", "NLR", "" ], [ "P34997-1", "Burkitt lymphoma receptor 1 homolog", "", "" ], [ "Q9WUD9-1", "pp60c-src", "p60-Src", "" ], [ "Q9WUD9-1", "Proto-oncogene c-Src", "", "" ], [ "Q8R553-1", "Alcadein-beta", "Alc-beta", "" ], [ "Q925Q4-1", "Thyrostimulin subunit alpha", "", "" ], [ "Q925Q4-1", "Putative secreted protein Zsig51", "", "" ], [ "Q9QX69-1", "40 kDa erythrocyte membrane protein", "p40", "" ], [ "Q9QX69-1", "LanC-like protein 1", "", "" ], [ "P30348-1", "Cytokine-induced neutrophil chemoattractant 3", "CINC-3", "" ], [ "P30348-1", "Macrophage inflammatory protein 2", "MIP2", "" ], [ "Q9WUD2-1", "Vanilloid receptor-like protein 1", "VRL-1", "" ], [ "Q9WUD2-1", "Osm-9-like TRP channel 2", "OTRPC2", "" ], [ "Q9WUD2-1", "Stretch-activated channel 2B", "", "" ], [ "Q07969-1", "Glycoprotein IIIb", "GPIIIB", "" ], [ "Q07969-1", "Platelet glycoprotein IV", "GPIV", "" ], [ "Q07969-1", "Fatty acid translocase", "", "" ], [ "Q07969-1", "PAS-4", "", "" ], [ "Q07969-1", "Fatty acid transport protein", "", "" ], [ "Q07969-1", "PAS IV", "", "" ], [ "Q07969-1", "Adipocyte membrane protein", "", "" ], [ "A0A096MJY4-1", "Myocyte enhancer factor 2C", "", "" ], [ "O88181-1", "Bar-class homeodomain protein MBH1", "", "" ], [ "O88181-1", "Homeobox protein B-H1", "", "" ], [ "Q2KN99-1", "Sperm antigen with calponin homology and coiled-coil domains 1-like", "", "" ], [ "Q2KN99-1", "SPECC1-like protein", "", "" ], [ "O55043-1", "Beta-Pix", "", "" ], [ "O55043-1", "PAK-interacting exchange factor beta", "", "" ], [ "O54783-1", "Ethanolamine kinase", "EK", "2.7.1.82" ], [ "O54783-1", "Choline kinase beta", "CKB", "2.7.1.32" ], [ "O54783-1", "Choline kinase beta", "CK", "2.7.1.32" ], [ "O54783-1", "choline/ethanolamine kinase beta", "CKEKB", "" ], [ "P01946-1", "Alpha-1/2-globin", "", "" ], [ "P01946-1", "Hemoglobin alpha-1/2 chain", "", "" ], [ "P20646-1", "5'-nucleotidase", "5'-NT", "3.1.3.5" ], [ "P20646-1", "Thiamine monophosphatase", "TMPase", "" ], [ "P20646-1", "Fluoride-resistant acid phosphatase", "FRAP", "" ], [ "P20646-1", "Ecto-5'-nucleotidase", "", "" ], [ "P20646-1", "Acid phosphatase 3", "", "" ], [ "P56574-1", "Oxalosuccinate decarboxylase", "", "" ], [ "P56574-1", "ICD-M", "", "" ], [ "P56574-1", "NADP(+)-specific ICDH", "", "" ], [ "P56574-1", "IDP", "", "" ], [ "Q5BK10-1", "Calcium-activated neutral proteinase 13", "CANP 13", "" ], [ "O35152-1", "Golgi SNARE with a size of 15 kDa", "GOS-15", "" ], [ "O35152-1", "Golgi SNARE with a size of 15 kDa", "GS15", "" ], [ "O35152-1", "Vesicle transport protein GOS15", "", "" ], [ "P48965-1", "Dual specificity phosphatase Cdc25A", "", "" ], [ "Q6P7Q1-1", "BRCA1/BRCA2-containing complex subunit 45", "", "" ], [ "Q6P7Q1-1", "Brain and reproductive organ-expressed protein", "", "" ], [ "Q6P7Q1-1", "BRCA1-A complex subunit BRE", "", "" ], [ "P48966-1", "Dual specificity phosphatase Cdc25B", "", "" ], [ "Q6P7Q4-1", "Glyoxalase I", "Glx I", "" ], [ "Q6P7Q4-1", "Ketone-aldehyde mutase", "", "" ], [ "Q6P7Q4-1", "Aldoketomutase", "", "" ], [ "Q6P7Q4-1", "Methylglyoxalase", "", "" ], [ "Q6P7Q4-1", "S-D-lactoylglutathione methylglyoxal lyase", "", "" ], [ "Q6AY39-1", "Beta-1,3-galactosyltransferase 3", "Beta-1,3-GalTase 3", "" ], [ "Q6AY39-1", "Beta-1,3-galactosyltransferase 3", "Beta3Gal-T3", "" ], [ "Q6AY39-1", "Beta-1,3-galactosyltransferase 3", "Beta3GalT3", "" ], [ "Q6AY39-1", "Beta-1,3-galactosyltransferase 3", "b3Gal-T3", "" ], [ "Q6AY39-1", "Beta-3-Gx-T3", "", "" ], [ "Q6AY39-1", "UDP-N-acetylgalactosamine:globotriaosylceramide beta-1,3-N-acetylgalactosaminyltransferase", "", "" ], [ "Q6AY39-1", "Globoside synthase", "", "" ], [ "Q6AY39-1", "Galactosylgalactosylglucosylceramide beta-D-acetyl-galactosaminyltransferase", "", "" ], [ "Q5M807-1", "RING finger protein 5", "", "" ], [ "Q5M807-1", "RING-type E3 ubiquitin transferase RNF5", "", "" ], [ "Q9QYH1-1", "Discs large homolog 6", "rDLG6", "" ], [ "P02764-1", "Orosomucoid", "OMD", "" ], [ "P02767-1", "Prealbumin", "", "" ], [ "P02767-1", "TBPA", "", "" ], [ "Q6AYD2-1", "Suppressor of cdc thirteen homolog", "", "" ], [ "Q6AYD2-1", "Oligonucleotide/oligosaccharide-binding fold-containing protein 1", "", "" ] ] }, "readme": "Name\n - Rat Protein Alternative Name (UniProtKB)\n\nVersion\n - 1.8.24\n\nCreated on\n - 2019-09-06T14:06:38.991804\n\nModified on\n - 2020-04-10T12:05:45.412679\n\nCreated by\n - Jeet Vora [jeetvora@gwu.edu], Rahi Navelkar [rsn13@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Xavier Holmes [xavierh@email.gwu.edu]\n\nAuthors\n - Maria Martin [martin@ebi.ac.uk], Preethi Vasudev [pvasudev@ebi.ac.uk]\n\nChecksum\n - \n\nUsability Domain\n - The Rat Protein Alternative Name (UniProtKB) dataset contains UniProtKB alternative names for rat [taxid:10116] proteins. The dataset is derived from 2019-05 UniProt release. If you use this dataset please provide proper attribution to EMBL-EBI-UniProtKB and GlyGen\n\nDescription Domain\n Keywords\n - protein alternative name\n - UniProtKB\n\n Pipeline Steps\n - Step-1: The script loads the UniProtKB alternative names for protein accessions from the triplestore containing triples from nt file and extracts the alternative protein names into csv dataset file\n\nExecution Domain\n Scripts - https://github.com/GW-HIVE/glygen-backend-integration/blob/master/pipeline/integrator/make-protein-dataset.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: uniprot-proteome-rattus-norvegicus.nt\n URI: https://data.glygen.org/ln2data/releases/data/v-1.8.24/source/uniprot-proteome-rattus-norvegicus.nt\n Name: rat_protein_masterlist.csv\n URI: https://data.glygen.org/ln2data/releases/data/v-1.8.24/reviewed/rat_protein_masterlist.csv\n Output Subdomain\n Name: rat_protein_altnames.csv\n URI: http://data.glygen.org/ln2data/releases/data/v-1.8.24/reviewed/rat_protein_altnames.csv\n Name: rat_protein_altnames.stat.csv\n URI: http://data.glygen.org/ln2data/releases/data/v-1.8.24/reviewed/rat_protein_altnames.stat.csv\n\nFields\n Name: \"src_xref_key\"\n Description: \"Source Xref key\"\n Unique Values: \"1\"\n Name: \"xref_id\"\n Description: \"ID of the X-ref\"\n Unique Values: \"119\"\n Name: \"title\"\n Description: \"Title of the published article in the journal\"\n Unique Values: \"119\"\n Name: \"src_xref_id\"\n Description: \"Source X-ref ID\"\n Unique Values: \"120\"\n Name: \"journal_name\"\n Description: \"The name of the journal in which the article is published\"\n Unique Values: \"49\"\n Name: \"authors\"\n Description: \"NA\"\n Unique Values: \"118\"\n Name: \"publication_date\"\n Description: \"Contains the full date on which the issue of the journal was published. Sourced from MEDLINE/PubMed data element(fields) description.\"\n Unique Values: \"117\"\n Name: \"glytoucan_ac\"\n Description: \"Unique accession assigned to the registered glycan structure in GlyTouCan database\"\n Unique Values: \"115\"\n Name: \"xref_key\"\n Description: \"Source key associated to the xref_id\"\n Unique Values: \"1\"", "downloadurl": "/ln2data/releases/data/v-1.8.24/reviewed/rat_protein_altnames.csv" }