{
    "bcoid": "GLY_000264",
    "title": "Rat Protein Citations (RefSeq)",
    "description": "The Rat Protein Citations (RefSeq) datasets contains rat [taxid:10116] UniProtKB accessions mapped to ...",
    "filename": "rat_protein_citations_refseq.csv",
    "filetype": "csv",
    "categories": {
        "species": "Rattus norvegicus",
        "molecule": "Protein",
        "tags": "Protein Citations",
        "file_type": "csv",
        "status": "Reviewed",
        "scope": "internal"
    },
    "minitable": {
        "content": [
            [
                "D3ZWN3-1...",
                "Evc2 is a po..."
            ],
            [
                "B0K008-1...",
                "Stringency o..."
            ]
        ],
        "headers": [
            "uniprotkb_ca...",
            "title..."
        ],
        "colwidth": [
            "40%",
            "20%"
        ]
    },
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        "data": [
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                {
                    "type": "string",
                    "label": "uniprotkb_canonical_ac"
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                {
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                    "label": "title"
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                {
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                    "label": "journal_name"
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                {
                    "type": "string",
                    "label": "publication_date"
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                    "type": "string",
                    "label": "authors"
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                {
                    "type": "string",
                    "label": "xref_key"
                },
                {
                    "type": "string",
                    "label": "xref_id"
                },
                {
                    "type": "string",
                    "label": "src_xref_key"
                },
                {
                    "type": "string",
                    "label": "src_xref_id"
                }
            ],
            [
                "D3ZWN3-1",
                "Evc2 is a positive modulator of Hedgehog signalling that interacts with Evc at the cilia membrane and is also found in the nucleus.",
                "BMC biology",
                "2011 Feb 28",
                "Blair HJ, Tompson S, Liu YN, Campbell J, MacArthur K, Ponting CP, Ruiz-Perez VL, Goodship JA",
                "protein_xref_pubmed",
                "21356043",
                "protein_xref_refseq",
                "NP_001099482.1"
            ],
            [
                "B0K008-1",
                "Stringency of start codon selection modulates autoregulation of translation initiation factor eIF5.",
                "Nucleic acids research",
                "2012 Apr",
                "Loughran G, Sachs MS, Atkins JF, Ivanov IP",
                "protein_xref_pubmed",
                "22156057",
                "protein_xref_refseq",
                "NP_001099307.1"
            ],
            [
                "F1M5T3-1",
                "Pygo1 and Pygo2 roles in Wnt signaling in mammalian kidney development.",
                "BMC biology",
                "2007 Apr 10",
                "Schwab KR, Patterson LT, Hartman HA, Song N, Lang RA, Lin X, Potter SS",
                "protein_xref_pubmed",
                "17425782",
                "protein_xref_refseq",
                "NP_001178046.1"
            ],
            [
                "Q6AXU8-1",
                "Three distinct 3-methylcytidine (m(3)C) methyltransferases modify tRNA and mRNA in mice and humans.",
                "The Journal of biological chemistry",
                "2017 Sep 1",
                "Xu L, Liu X, Sheng N, Oo KS, Liang J, Chionh YH, Xu J, Ye F, Gao YG, Dedon PC, Fu XY",
                "protein_xref_pubmed",
                "28655767",
                "protein_xref_refseq",
                "NP_001007624.1"
            ],
            [
                "P63329-1",
                "Involvement of calcineurin/NFATc4 pathway in a single-prolonged stress-based rat model of post-traumatic stress disorder.",
                "Molecular biology reports",
                "2019 Dec",
                "Su Q, Liu M, Jiang M, Wang Y, Ma X, Li S, Xie J",
                "protein_xref_pubmed",
                "31486013",
                "protein_xref_refseq",
                "NP_058737.1"
            ],
            [
                "B1WC80-1",
                "Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences.",
                "Proceedings of the National Academy of Sciences of the United States of America",
                "2002 Dec 24",
                "Strausberg RL, Feingold EA, Grouse LH, Derge JG, Klausner RD, Collins FS, Wagner L, Shenmen CM, Schuler GD, Altschul SF, Zeeberg B, Buetow KH, Schaefer CF, Bhat NK, Hopkins RF, Jordan H, Moore T, Max SI, Wang J, Hsieh F, Diatchenko L, Marusina K, Farmer AA, Rubin GM, Hong L, Stapleton M, Soares MB, Bonaldo MF, Casavant TL, Scheetz TE, Brownstein MJ, Usdin TB, Toshiyuki S, Carninci P, Prange C, Raha SS, Loquellano NA, Peters GJ, Abramson RD, Mullahy SJ, Bosak SA, McEwan PJ, McKernan KJ, Malek JA, Gunaratne PH, Richards S, Worley KC, Hale S, Garcia AM, Gay LJ, Hulyk SW, Villalon DK, Muzny DM, Sodergren EJ, Lu X, Gibbs RA, Fahey J, Helton E, Ketteman M, Madan A, Rodrigues S, Sanchez A, Whiting M, Madan A, Young AC, Shevchenko Y, Bouffard GG, Blakesley RW, Touchman JW, Green ED, Dickson MC, Rodriguez AC, Grimwood J, Schmutz J, Myers RM, Butterfield YS, Krzywinski MI, Skalska U, Smailus DE, Schnerch A, Schein JE, Jones SJ, Marra MA",
                "protein_xref_pubmed",
                "12477932",
                "protein_xref_refseq",
                "NP_001102781.1"
            ],
            [
                "Q5BJN3-1",
                "Alternative splicing: a pivotal step between eukaryotic transcription and translation.",
                "Nature reviews. Molecular cell biology",
                "2013 Mar",
                "Kornblihtt AR, Schor IE, Allo M, Dujardin G, Petrillo E, Munoz MJ",
                "protein_xref_pubmed",
                "23385723",
                "protein_xref_refseq",
                "NP_001013211.1"
            ],
            [
                "G3V9V1-1",
                "A gene encoding a family with sequence similarity 84, member A (FAM84A) enhanced migration of human colon cancer cells.",
                "International journal of oncology",
                "2006 Aug",
                "Kobayashi T, Masaki T, Sugiyama M, Atomi Y, Furukawa Y, Nakamura Y",
                "protein_xref_pubmed",
                "16820875",
                "protein_xref_refseq",
                "NP_001120771.1"
            ],
            [
                "D4A4S5-1",
                "Antiinflammatory Activity of a Novel Folic Acid Targeted Conjugate of the mTOR Inhibitor Everolimus.",
                "Molecular medicine (Cambridge, Mass.)",
                "2015 Jul 8",
                "Lu Y, Parker N, Kleindl PJ, Cross VA, Wollak K, Westrick E, Stinnette TW, Gehrke MA, Wang K, Santhapuram HK, You F, Hahn SJ, Vaughn JF, Klein PJ, Vlahov IR, Low PS, Leamon CP",
                "protein_xref_pubmed",
                "26181632",
                "protein_xref_refseq",
                "NP_001099753.1"
            ],
            [
                "F1LXA0-1",
                "Oxidative damage to mitochondrial complex I due to peroxynitrite: identification of reactive tyrosines by mass spectrometry.",
                "The Journal of biological chemistry",
                "2003 Sep 26",
                "Murray J, Taylor SW, Zhang B, Ghosh SS, Capaldi RA",
                "protein_xref_pubmed",
                "12857734",
                "protein_xref_refseq",
                "NP_001100251.2"
            ],
            [
                "Q66HC5-1",
                "Mutations in nuclear pore genes NUP93, NUP205 and XPO5 cause steroid-resistant nephrotic syndrome.",
                "Nature genetics",
                "2016 Apr",
                "Braun DA, Sadowski CE, Kohl S, Lovric S, Astrinidis SA, Pabst WL, Gee HY, Ashraf S, Lawson JA, Shril S, Airik M, Tan W, Schapiro D, Rao J, Choi WI, Hermle T, Kemper MJ, Pohl M, Ozaltin F, Konrad M, Bogdanovic R, Buscher R, Helmchen U, Serdaroglu E, Lifton RP, Antonin W, Hildebrandt F",
                "protein_xref_pubmed",
                "26878725",
                "protein_xref_refseq",
                "NP_001011925.1"
            ],
            [
                "P97831-1",
                "Human Dermo-1 has attributes similar to twist in early bone development.",
                "Bone",
                "2000 Nov",
                "Lee MS, Lowe G, Flanagan S, Kuchler K, Glackin CA",
                "protein_xref_pubmed",
                "11062344",
                "protein_xref_refseq",
                "NP_067723.1"
            ],
            [
                "P36380-1",
                "High-density rat radiation hybrid maps containing over 24,000 SSLPs, genes, and ESTs provide a direct link to the rat genome sequence.",
                "Genome research",
                "2004 Apr",
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                "protein_xref_pubmed",
                "15060019",
                "protein_xref_refseq",
                "NP_446436.1"
            ],
            [
                "P22771-1",
                "Glycinergic input of widefield, displaced amacrine cells of the mouse retina.",
                "The Journal of physiology",
                "2009 Aug 1",
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                "protein_xref_pubmed",
                "19528249",
                "protein_xref_refseq",
                "NP_036700.1"
            ],
            [
                "Q5FVG8-1",
                "MTR120/KIAA1383, a novel microtubule-associated protein, promotes microtubule stability and ensures cytokinesis.",
                "Journal of cell science",
                "2013 Feb 1",
                "Fong KW, Leung JW, Li Y, Wang W, Feng L, Ma W, Liu D, Songyang Z, Chen J",
                "protein_xref_pubmed",
                "23264731",
                "protein_xref_refseq",
                "NP_001014033.1"
            ],
            [
                "Q4V8F4-1",
                "Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences.",
                "Proceedings of the National Academy of Sciences of the United States of America",
                "2002 Dec 24",
                "Strausberg RL, Feingold EA, Grouse LH, Derge JG, Klausner RD, Collins FS, Wagner L, Shenmen CM, Schuler GD, Altschul SF, Zeeberg B, Buetow KH, Schaefer CF, Bhat NK, Hopkins RF, Jordan H, Moore T, Max SI, Wang J, Hsieh F, Diatchenko L, Marusina K, Farmer AA, Rubin GM, Hong L, Stapleton M, Soares MB, Bonaldo MF, Casavant TL, Scheetz TE, Brownstein MJ, Usdin TB, Toshiyuki S, Carninci P, Prange C, Raha SS, Loquellano NA, Peters GJ, Abramson RD, Mullahy SJ, Bosak SA, McEwan PJ, McKernan KJ, Malek JA, Gunaratne PH, Richards S, Worley KC, Hale S, Garcia AM, Gay LJ, Hulyk SW, Villalon DK, Muzny DM, Sodergren EJ, Lu X, Gibbs RA, Fahey J, Helton E, Ketteman M, Madan A, Rodrigues S, Sanchez A, Whiting M, Madan A, Young AC, Shevchenko Y, Bouffard GG, Blakesley RW, Touchman JW, Green ED, Dickson MC, Rodriguez AC, Grimwood J, Schmutz J, Myers RM, Butterfield YS, Krzywinski MI, Skalska U, Smailus DE, Schnerch A, Schein JE, Jones SJ, Marra MA",
                "protein_xref_pubmed",
                "12477932",
                "protein_xref_refseq",
                "NP_001020042.2"
            ],
            [
                "D3ZKC6-1",
                "Mutations in VPS13D lead to a new recessive ataxia with spasticity and mitochondrial defects.",
                "Annals of neurology",
                "2018 Jun",
                "Seong E, Insolera R, Dulovic M, Kamsteeg EJ, Trinh J, Bruggemann N, Sandford E, Li S, Ozel AB, Li JZ, Jewett T, Kievit AJA, Munchau A, Shakkottai V, Klein C, Collins CA, Lohmann K, van de Warrenburg BP, Burmeister M",
                "protein_xref_pubmed",
                "29604224",
                "protein_xref_refseq",
                "NP_001101476.1"
            ],
            [
                "B2GV52-1",
                "Identification of snapin and three novel proteins (BLOS1, BLOS2, and BLOS3/reduced pigmentation) as subunits of biogenesis of lysosome-related organelles complex-1 (BLOC-1).",
                "The Journal of biological chemistry",
                "2004 Jul 2",
                "Starcevic M, Dell'Angelica EC",
                "protein_xref_pubmed",
                "15102850",
                "protein_xref_refseq",
                "NP_001100817.1"
            ],
            [
                "F1LMI3-1",
                "Expression of T-cadherin in Basal keratinocytes of skin.",
                "The Journal of investigative dermatology",
                "2002 Jun",
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                "protein_xref_refseq",
                "NP_446390.2"
            ],
            [
                "Q6RVG2-1",
                "Regulation of the rat brain Na+ -driven Cl-/HCO3 - exchanger involves protein kinase A and a multiprotein signaling complex.",
                "FEBS letters",
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                "Lee YS, Ouyang YB, Giffard RG",
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                "NP_001257723.1"
            ],
            [
                "Q99N34-1",
                "Nuclear Akt associates with PKC-phosphorylated Ebp1, preventing DNA fragmentation by inhibition of caspase-activated DNase.",
                "The EMBO journal",
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                "protein_xref_pubmed",
                "16642037",
                "protein_xref_refseq",
                "NP_445814.1"
            ],
            [
                "Q7TSB7-1",
                "Metabolic regulation of female puberty via hypothalamic AMPK-kisspeptin signaling.",
                "Proceedings of the National Academy of Sciences of the United States of America",
                "2018 Nov 6",
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                "30348767",
                "protein_xref_refseq",
                "NP_859043.1"
            ],
            [
                "Q63259-1",
                "ICA512 RESP18 homology domain is a protein-condensing factor and insulin fibrillation inhibitor.",
                "The Journal of biological chemistry",
                "2019 May 24",
                "Toledo PL, Torkko JM, Muller A, Wegbrod C, Sonmez A, Solimena M, Ermacora MR",
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                "protein_xref_refseq",
                "NP_446333.1"
            ],
            [
                "P07483-1",
                "Increased Rat Placental Fatty Acid, but Decreased Amino Acid and Glucose Transporters Potentially Modify Intrauterine Programming.",
                "Journal of cellular biochemistry",
                "2016 Jul",
                "Nusken E, Gellhaus A, Kuhnel E, Swoboda I, Wohlfarth M, Vohlen C, Schneider H, Dotsch J, Nusken KD",
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                "26590355",
                "protein_xref_refseq",
                "NP_077076.1"
            ],
            [
                "P10960-1",
                "Prosaposin and its receptors are differentially expressed in the salivary glands of male and female rats.",
                "Cell and tissue research",
                "2018 Aug",
                "Islam F, Khan MSI, Nabeka H, Saito S, Li X, Shimokawa T, Yamamiya K, Kobayashi N, Matsuda S",
                "protein_xref_pubmed",
                "29656342",
                "protein_xref_refseq",
                "NP_001177165.1"
            ],
            [
                "Q58NB7-1",
                "Expression of Retinoid Acid Receptor-Responsive Genes in Rodent Models of Placental Pathology.",
                "International journal of molecular sciences",
                "2019 Dec 29",
                "Mocker A, Schmidt M, Huebner H, Wachtveitl R, Cordasic N, Menendez-Castro C, Hartner A, Fahlbusch FB",
                "protein_xref_pubmed",
                "31905805",
                "protein_xref_refseq",
                "NP_001014790.1"
            ],
            [
                "G3V6C0-1",
                "NLR family member NLRC5 is a transcriptional regulator of MHC class I genes.",
                "Proceedings of the National Academy of Sciences of the United States of America",
                "2010 Aug 3",
                "Meissner TB, Li A, Biswas A, Lee KH, Liu YJ, Bayir E, Iliopoulos D, van den Elsen PJ, Kobayashi KS",
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                "20639463",
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                "NP_445981.2"
            ],
            [
                "P62718-1",
                "Structures of the human and Drosophila 80S ribosome.",
                "Nature",
                "2013 May 2",
                "Anger AM, Armache JP, Berninghausen O, Habeck M, Subklewe M, Wilson DN, Beckmann R",
                "protein_xref_pubmed",
                "23636399",
                "protein_xref_refseq",
                "NP_997675.1"
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            [
                "F1LNF0-1",
                "Characterization of three full-length human nonmuscle myosin II paralogs.",
                "The Journal of biological chemistry",
                "2013 Nov 15",
                "Billington N, Wang A, Mao J, Adelstein RS, Sellers JR",
                "protein_xref_pubmed",
                "24072716",
                "protein_xref_refseq",
                "NP_001094160.1"
            ],
            [
                "D4A523-1",
                "Mutation of a new gene encoding a putative pyrin-like protein causes familial cold autoinflammatory syndrome and Muckle-Wells syndrome.",
                "Nature genetics",
                "2001 Nov",
                "Hoffman HM, Mueller JL, Broide DH, Wanderer AA, Kolodner RD",
                "protein_xref_pubmed",
                "11687797",
                "protein_xref_refseq",
                "NP_001178571.1"
            ],
            [
                "P14173-1",
                "The roles of striatal serotonin and L -amino-acid decarboxylase on L-DOPA-induced Dyskinesia in a Hemiparkinsonian rat model.",
                "Cellular and molecular neurobiology",
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                "Gil S, Park C, Lee J, Koh H",
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            ],
            [
                "Q8CJE3-1",
                "Myosin VIIa Supports Spermatid/Organelle Transport and Cell Adhesion During Spermatogenesis in the Rat Testis.",
                "Endocrinology",
                "2019 Mar 1",
                "Wen Q, Wu S, Lee WM, Wong CKC, Lui WY, Silvestrini B, Cheng CY",
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                "NP_703203.1"
            ],
            [
                "O35952-1",
                "cDNA cloning and characterization of a rat spermatogenesis-associated protein RSP29.",
                "Biochemical and biophysical research communications",
                "1997 Dec 29",
                "Ji X, Moore HD, Russell RG, Watts DJ",
                "protein_xref_pubmed",
                "9434774",
                "protein_xref_refseq",
                "NP_203500.2"
            ],
            [
                "D3ZRE6-1",
                "Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences.",
                "Proceedings of the National Academy of Sciences of the United States of America",
                "2002 Dec 24",
                "Strausberg RL, Feingold EA, Grouse LH, Derge JG, Klausner RD, Collins FS, Wagner L, Shenmen CM, Schuler GD, Altschul SF, Zeeberg B, Buetow KH, Schaefer CF, Bhat NK, Hopkins RF, Jordan H, Moore T, Max SI, Wang J, Hsieh F, Diatchenko L, Marusina K, Farmer AA, Rubin GM, Hong L, Stapleton M, Soares MB, Bonaldo MF, Casavant TL, Scheetz TE, Brownstein MJ, Usdin TB, Toshiyuki S, Carninci P, Prange C, Raha SS, Loquellano NA, Peters GJ, Abramson RD, Mullahy SJ, Bosak SA, McEwan PJ, McKernan KJ, Malek JA, Gunaratne PH, Richards S, Worley KC, Hale S, Garcia AM, Gay LJ, Hulyk SW, Villalon DK, Muzny DM, Sodergren EJ, Lu X, Gibbs RA, Fahey J, Helton E, Ketteman M, Madan A, Rodrigues S, Sanchez A, Whiting M, Madan A, Young AC, Shevchenko Y, Bouffard GG, Blakesley RW, Touchman JW, Green ED, Dickson MC, Rodriguez AC, Grimwood J, Schmutz J, Myers RM, Butterfield YS, Krzywinski MI, Skalska U, Smailus DE, Schnerch A, Schein JE, Jones SJ, Marra MA",
                "protein_xref_pubmed",
                "12477932",
                "protein_xref_refseq",
                "NP_001101325.1"
            ],
            [
                "P20417-1",
                "The nontransmembrane tyrosine phosphatase PTP-1B localizes to the endoplasmic reticulum via its 35 amino acid C-terminal sequence.",
                "Cell",
                "1992 Feb 7",
                "Frangioni JV, Beahm PH, Shifrin V, Jost CA, Neel BG",
                "protein_xref_pubmed",
                "1739967",
                "protein_xref_refseq",
                "NP_036769.1"
            ],
            [
                "O08773-1",
                "14-3-3gamma binds regulator of G protein signaling 14 (RGS14) at distinct sites to inhibit the RGS14:Galphai-AlF4(-) signaling complex and RGS14 nuclear localization.",
                "The Journal of biological chemistry",
                "2018 Sep 21",
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                "protein_xref_refseq",
                "NP_446216.1"
            ],
            [
                "D3ZX13-1",
                "M phase phosphoprotein 1 is a human plus-end-directed kinesin-related protein required for cytokinesis.",
                "The Journal of biological chemistry",
                "2003 Jul 25",
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                "protein_xref_refseq",
                "NP_001101079.2"
            ],
            [
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                "Expression of synaptogyrin-1 in T1R2-expressing type II taste cells and type III taste cells of rat circumvallate taste buds.",
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            ],
            [
                "P62893-1",
                "Isolation of eukaryotic ribosomal proteins. Purification and characterization of the 60 S ribosomal subunit proteins L4, L5, L7, L9, L11, L12, L13, L21, L22, L23, L26, L27, L30, L33, L35', L37, and L39.",
                "The Journal of biological chemistry",
                "1976 Dec 25",
                "Tsurugi K, Collatz E, Wool EG, Lin A",
                "protein_xref_pubmed",
                "1002715",
                "protein_xref_refseq",
                "NP_037007.1"
            ],
            [
                "D3ZT94-1",
                "Pentraxin 3 inhibits fibroblast growth factor 2-dependent activation of smooth muscle cells in vitro and neointima formation in vivo.",
                "Arteriosclerosis, thrombosis, and vascular biology",
                "2005 Sep",
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                "protein_xref_refseq",
                "NP_001103006.1"
            ],
            [
                "P62982-1",
                "Structures of the human and Drosophila 80S ribosome.",
                "Nature",
                "2013 May 2",
                "Anger AM, Armache JP, Berninghausen O, Habeck M, Subklewe M, Wilson DN, Beckmann R",
                "protein_xref_pubmed",
                "23636399",
                "protein_xref_refseq",
                "NP_001292372.1"
            ],
            [
                "B2BKY8-1",
                "Overexpression of full-length centrobin rescues limb malformation but not male fertility of the hypodactylous (hd) rats.",
                "PloS one",
                "2013",
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                "protein_xref_pubmed",
                "23577170",
                "protein_xref_refseq",
                "NP_001128117.1"
            ],
            [
                "Q07014-1",
                "Steel factor stimulates the tyrosine phosphorylation of the proto-oncogene product, p95vav, in human hemopoietic cells.",
                "The Journal of biological chemistry",
                "1992 Sep 5",
                "Alai M, Mui AL, Cutler RL, Bustelo XR, Barbacid M, Krystal G",
                "protein_xref_pubmed",
                "1381360",
                "protein_xref_refseq",
                "NP_001104568.1"
            ],
            [
                "P02803-1",
                "Conformation of [Cd7]-metallothionein-2 from rat liver in aqueous solution determined by nuclear magnetic resonance spectroscopy.",
                "Journal of molecular biology",
                "1988 Sep 5",
                "Schultze P, Worgotter E, Braun W, Wagner G, Vasak M, Kagi JH, Wuthrich K",
                "protein_xref_pubmed",
                "3184190",
                "protein_xref_refseq",
                "NP_620181.1"
            ],
            [
                "P46002-1",
                "Molecular cloning and characterization of the platelet-activating factor receptor gene expressed in the human heart.",
                "Biochemical and biophysical research communications",
                "1992 Dec 15",
                "Sugimoto T, Tsuchimochi H, McGregor CG, Mutoh H, Shimizu T, Kurachi Y",
                "protein_xref_pubmed",
                "1281995",
                "protein_xref_refseq",
                "NP_445773.1"
            ],
            [
                "O88751-1",
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                "11906216",
                "protein_xref_refseq",
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                "protein_xref_refseq",
                "NP_001034286.1"
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                "protein_xref_pubmed",
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                "protein_xref_refseq",
                "NP_036771.1"
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                "2002 Jan 11",
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            [
                "Q8R4A1-1",
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            [
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            [
                "Q3B7T6-1",
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            [
                "Q5PQK4-1",
                "Tandem protein interaction modules organize the ubiquitin-dependent response to DNA double-strand breaks.",
                "Molecular cell",
                "2012 Aug 10",
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            [
                "Q99NA7-1",
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            [
                "P63035-1",
                "Tamalin, a PDZ domain-containing protein, links a protein complex formation of group 1 metabotropic glutamate receptors and the guanine nucleotide exchange factor cytohesins.",
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            [
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                "Functional association of human Ki-1/57 with pre-mRNA splicing events.",
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                "NP_001073409.1"
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            [
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            ],
            [
                "P05545-1",
                "Pivotal role for alpha1-antichymotrypsin in skin repair.",
                "The Journal of biological chemistry",
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                "protein_xref_pubmed",
                "21693707",
                "protein_xref_refseq",
                "NP_036789.2"
            ],
            [
                "D3ZPV8-1",
                "The mRNA distribution of C7orf24, a gamma-glutamyl cyclotransferase, in rat tissues.",
                "The journal of histochemistry and cytochemistry : official journal of the Histochemistry Society",
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            [
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                "Epidermal NLRP10 contributes to contact hypersensitivity responses in mice.",
                "European journal of immunology",
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            ],
            [
                "P27049-1",
                "Genetics of the rat CT system: its apparent complexity is a consequence of cross-reactivity between the distinct MHC class I antigens RT1.C and RT1.A.",
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                "1985 Apr",
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                "3878378",
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            [
                "Q562C2-1",
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                "The Journal of cell biology",
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                "16043514",
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                "NP_001019421.1"
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            [
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                "12477932",
                "protein_xref_refseq",
                "NP_001103144.1"
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            [
                "Q5FVH9-1",
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            [
                "P04799-1",
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                "Science signaling",
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                "Guo Z, Neilson LJ, Zhong H, Murray PS, Zanivan S, Zaidel-Bar R",
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                "NP_072138.2"
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            [
                "Q5BJZ3-1",
                "Nicotinamide nucleotide transhydrogenase (Nnt) links the substrate requirement in brain mitochondria for hydrogen peroxide removal to the thioredoxin/peroxiredoxin (Trx/Prx) system.",
                "The Journal of biological chemistry",
                "2014 May 30",
                "Lopert P, Patel M",
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                "24722990",
                "protein_xref_refseq",
                "NP_001013175.1"
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                "Q5BJZ9-1",
                "Involvement of TG-interacting factor in microglial activation during experimental traumatic brain injury.",
                "Journal of neurochemistry",
                "2014 Dec",
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                "25319900",
                "protein_xref_refseq",
                "NP_001015020.1"
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            [
                "Q68FP9-1",
                "The binary interacting network of the conserved oligomeric Golgi tethering complex.",
                "The Journal of biological chemistry",
                "2004 Jun 4",
                "Loh E, Hong W",
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                "15047703",
                "protein_xref_refseq",
                "NP_001004262.1"
            ]
        ]
    },
    "readme": "Name\n   - Rat Protein Citations (RefSeq)\n\nVersion\n   - 1.8.24\n\nCreated on\n  - 2019-09-06T14:06:38.990766\n\nModified on\n   - 2020-04-10T12:05:22.894637\n\nCreated by\n   - Jeet Vora [jeetvora@gwu.edu], Rahi Navelkar [rsn13@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Xavier Holmes [xavierh@email.gwu.edu]\n\nAuthors\n   - Maria Martin [martin@ebi.ac.uk], Preethi Vasudev [pvasudev@ebi.ac.uk]\n\nChecksum\n   - \n\nUsability Domain\n   - The Rat Protein Citations (RefSeq) datasets contains rat [taxid:10116] UniProtKB accessions mapped to publication information (pmid, title, journal name, publication, date, authors of corresponding RefSeq accessions. The dataset is derived from NCBI RefSeq Release 96, September 9, 2019. If you use this dataset please provide proper attribution to NCBI RefSeq and GlyGen\n\nDescription Domain\n   Keywords\n   - PMID\n   - journal\n   - citations\n   - authors\n   - RefSeq\n   - PubMed\n\n   Pipeline Steps\n   - Step-1: The script parses the NCBI RefSeq gpff files to extract the publication information. The script also maps RefSeq accesion to the UniProtKB Canonical accessions\n\nExecution Domain\n   Scripts   - https://github.com/GW-HIVE/glygen-backend-integration/blob/master/pipeline/integrator/make-protein-dataset.py\n\n\n   Software Prerequisites\n      Name: Python\n      Version: 2.7.5\n      URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n   Input Subdomain\n      Name: refseq_protein_all_10116.gpff\n      URI: https://data.glygen.org/ln2data/releases/data/v-1.8.24/source/refseq_protein_all_10116.gpff\n      Name: rat_protein_xref_refseq.csv\n      URI: https://data.glygen.org/ln2data/releases/data/v-1.8.24/reviewed/rat_protein_xref_refseq.csv\n   Output Subdomain\n      Name: rat_protein_citations_refseq.csv\n      URI: http://data.glygen.org/ln2data/releases/data/v-1.8.24/reviewed/rat_protein_citations_refseq.csv\n      Name: rat_protein_citations_refseq.stat.csv\n      URI: http://data.glygen.org/ln2data/releases/data/v-1.8.24/reviewed/rat_protein_citations_refseq.stat.csv\n\nFields\n      Name: \"src_xref_key\"\n     Description: \"Source Xref  key\"\n      Unique Values: \"1\"\n      Name: \"xref_id\"\n     Description: \"ID of the X-ref\"\n      Unique Values: \"119\"\n      Name: \"title\"\n     Description: \"Title of the published article in the journal\"\n      Unique Values: \"119\"\n      Name: \"src_xref_id\"\n     Description: \"Source X-ref ID\"\n      Unique Values: \"120\"\n      Name: \"journal_name\"\n     Description: \"The name of the journal in which the article is published\"\n      Unique Values: \"49\"\n      Name: \"authors\"\n     Description: \"NA\"\n      Unique Values: \"118\"\n      Name: \"publication_date\"\n     Description: \"Contains the full date on which the issue of the journal was published. Sourced from MEDLINE/PubMed data element(fields) description.\"\n      Unique Values: \"117\"\n      Name: \"glytoucan_ac\"\n     Description: \"Unique accession assigned to the registered glycan structure in GlyTouCan database\"\n      Unique Values: \"115\"\n      Name: \"xref_key\"\n     Description: \"Source key associated to the  xref_id\"\n      Unique Values: \"1\"",
    "downloadurl": "/ln2data/releases/data/v-1.8.24/reviewed/rat_protein_citations_refseq.csv"
}
