{ "bcoid": "GLY_000235", "title": "Mouse Protein Citations (RefSeq)", "description": "The Mouse Protein Citations (RefSeq) datasets contains mouse [taxid:10090] UniProtKB accessions mapped ...", "filename": "mouse_protein_citations_refseq.csv", "filetype": "csv", "categories": { "species": "Mus musculus", "molecule": "Protein", "tags": "Protein Citations", "file_type": "csv", "status": "Reviewed", "scope": "internal" }, "minitable": { "content": [ [ "Q6P3D7-1...", "Genomic stru..." ], [ "Q8C3F2-1...", "The human ge..." ] ], "headers": [ "uniprotkb_ca...", "title..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "uniprotkb_canonical_ac" }, { "type": "string", "label": "title" }, { "type": "string", "label": "journal_name" }, { "type": "string", "label": "publication_date" }, { "type": "string", "label": "authors" }, { "type": "string", "label": "xref_key" }, { "type": "string", "label": "xref_id" }, { "type": "string", "label": "src_xref_key" }, { "type": "string", "label": "src_xref_id" } ], [ "Q6P3D7-1", "Genomic structure of mouse SPI-C and genomic structure and expression pattern of human SPI-C.", "Gene", "2002 Oct 16", "Carlsson R, Hjalmarsson A, Liberg D, Persson C, Leanderson T", "protein_xref_pubmed", "12459275", "protein_xref_refseq", "NP_035591.3" ], [ "Q8C3F2-1", "The human gene CXorf17 encodes a member of a novel family of putative transmembrane proteins: cDNA cloning and characterization of CXorf17 and its mouse ortholog orf34.", "Gene", "2003 Oct 30", "Holden S, Raymond FL", "protein_xref_pubmed", "14585507", "protein_xref_refseq", "NP_932773.2" ], [ "Q80Z25-1", "The centrosomal OFD1 protein interacts with the translation machinery and regulates the synthesis of specific targets.", "Scientific reports", "2017 Apr 27", "Iaconis D, Monti M, Renda M, van Koppen A, Tammaro R, Chiaravalli M, Cozzolino F, Pignata P, Crina C, Pucci P, Boletta A, Belcastro V, Giles RH, Surace EM, Gallo S, Pende M, Franco B", "protein_xref_pubmed", "28450740", "protein_xref_refseq", "NP_803178.2" ], [ "O35668-1", "DYRK1A regulates Hap1-Dcaf7/WDR68 binding with implication for delayed growth in Down syndrome.", "Proceedings of the National Academy of Sciences of the United States of America", "2017 Feb 14", "Xiang J, Yang S, Xin N, Gaertig MA, Reeves RH, Li S, Li XJ", "protein_xref_pubmed", "28137862", "protein_xref_refseq", "NP_034534.1" ], [ "Q9EQX0-1", "Ghrelin gene expression is age-dependent and influenced by gender and the level of circulating IGF-I.", "Molecular and cellular endocrinology", "2002 Mar 28", "Liu YL, Yakar S, Otero-Corchon V, Low MJ, Liu JL", "protein_xref_pubmed", "12039068", "protein_xref_refseq", "NP_001273333.1" ], [ "P21183-1", "SLy2 controls the antibody response to pneumococcal vaccine through an IL-5Ralpha-dependent mechanism in B-1 cells.", "European journal of immunology", "2015 Jan", "Schmitt F, Schall D, Bucher K, Schindler TI, Hector A, Biedermann T, Zemlin M, Hartl D, Beer-Hammer S", "protein_xref_pubmed", "25330943", "protein_xref_refseq", "NP_032396.1" ], [ "Q9D8T0-1", "FAM3A enhances adipogenesis of 3T3-L1 preadipocytes via activation of ATP-P2 receptor-Akt signaling pathway.", "Oncotarget", "2017 Jul 11", "Chi Y, Li J, Li N, Chen Z, Ma L, Peng W, Pan X, Li M, Yu W, He X, Geng B, Cui Q, Liu Y, Yang J", "protein_xref_pubmed", "28515350", "protein_xref_refseq", "NP_001300654.1" ], [ "Q8CI61-1", "Involvement of a chaperone regulator, Bcl2-associated athanogene-4, in apolipoprotein B mRNA editing.", "The Journal of biological chemistry", "2003 Dec 26", "Lau PP, Chan L", "protein_xref_pubmed", "14559896", "protein_xref_refseq", "NP_080397.1" ], [ "Q9CQY7-1", "Genomic analysis of mouse retinal development.", "PLoS biology", "2004 Sep", "Blackshaw S, Harpavat S, Trimarchi J, Cai L, Huang H, Kuo WP, Weber G, Lee K, Fraioli RE, Cho SH, Yung R, Asch E, Ohno-Machado L, Wong WH, Cepko CL", "protein_xref_pubmed", "15226823", "protein_xref_refseq", "NP_080454.1" ], [ "Q9CXG9-1", "WT1 controls antagonistic FGF and BMP-pSMAD pathways in early renal progenitors.", "Nature communications", "2014 Jul 17", "Motamedi FJ, Badro DA, Clarkson M, Lecca MR, Bradford ST, Buske FA, Saar K, Hubner N, Brandli AW, Schedl A", "protein_xref_pubmed", "25031030", "protein_xref_refseq", "NP_082992.1" ], [ "Q8BW22-1", "Targeted disruption of the synovial sarcoma-associated SS18 gene causes early embryonic lethality and affects PPARBP expression.", "Human molecular genetics", "2006 Oct 1", "de Bruijn DR, Peters WJ, Chuva de Sousa Lopes SM, van Dijk AH, Willemse MP, Pfundt R, de Boer P, Geurts van Kessel A", "protein_xref_pubmed", "16926188", "protein_xref_refseq", "NP_848865.4" ], [ "P70166-1", "ZAR1 and ZAR2 are required for oocyte meiotic maturation by regulating the maternal transcriptome and mRNA translational activation.", "Nucleic acids research", "2019 Dec 2", "Rong Y, Ji SY, Zhu YZ, Wu YW, Shen L, Fan HY", "protein_xref_pubmed", "31598710", "protein_xref_refseq", "NP_031781.1" ], [ "Q9JKY7-1", "Molecular evolution of the CYP2D subfamily in primates: purifying selection on substrate recognition sites without the frequent or long-tract gene conversion.", "Genome biology and evolution", "2015 Mar 25", "Yasukochi Y, Satta Y", "protein_xref_pubmed", "25808902", "protein_xref_refseq", "NP_001156944.1" ], [ "P58710-1", "A deletion causing spontaneous fracture identified from a candidate region of mouse Chromosome 14.", "Mammalian genome : official journal of the International Mammalian Genome Society", "2005 Jan", "Jiao Y, Li X, Beamer WG, Yan J, Tong Y, Goldowitz D, Roe B, Gu W", "protein_xref_pubmed", "15674730", "protein_xref_refseq", "NP_848862.1" ], [ "A2A9I7-1", "Involvement of doublesex and mab-3-related transcription factors in human female germ cell development demonstrated by xenograft and interference RNA strategies.", "Molecular human reproduction", "2014 Oct", "Poulain M, Frydman N, Tourpin S, Muczynski V, Souquet 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Schneider-Maunoury S, Shroyer KR, Hannun YA, Koch PJ, Clark RA, Payne AS, Kowalczyk AP, Chen J", "protein_xref_pubmed", "30689641", "protein_xref_refseq", "NP_001300630.1" ], [ "F8VQB6-1", "Myh10 deficiency leads to defective extracellular matrix remodeling and pulmonary disease.", "Nature communications", "2018 Nov 2", "Kim HT, Yin W, Jin YJ, Panza P, Gunawan F, Grohmann B, Buettner C, Sokol AM, Preussner J, Guenther S, Kostin S, Ruppert C, Bhagwat AM, Ma X, Graumann J, Looso M, Guenther A, Adelstein RS, Offermanns S, Stainier DYR", "protein_xref_pubmed", "30389913", "protein_xref_refseq", "NP_062345.2" ], [ "Q6GQS1-1", "Extracellular ATP and glutamate drive pyruvate production and energy demand to regulate mitochondrial respiration in astrocytes.", "Glia", "2019 Apr", "Juaristi I, Llorente-Folch I, Satrustegui J, Del Arco A", "protein_xref_pubmed", "30623988", "protein_xref_refseq", "NP_080153.2" ], [ "Q91ZT5-1", "A molecular profile of a hematopoietic stem cell niche.", "Proceedings of the National Academy of Sciences of the United States of America", "2002 Oct 1", "Hackney JA, Charbord P, Brunk BP, Stoeckert CJ, Lemischka IR, Moore KA", "protein_xref_pubmed", "12226475", "protein_xref_refseq", "NP_001288747.1" ], [ "Q9JI67-1", "Impact of lactobacilli on orally acquired listeriosis.", "Proceedings of the National Academy of Sciences of the United States of America", "2012 Oct 9", "Archambaud C, Nahori MA, Soubigou G, Becavin C, Laval L, Lechat P, Smokvina T, Langella P, Lecuit M, Cossart P", "protein_xref_pubmed", "23012479", "protein_xref_refseq", "NP_001116465.1" ], [ "P18406-1", "Expression of cyr61, a growth factor-inducible immediate-early gene.", "Molecular and cellular biology", "1990 Jul", "O'Brien TP, Yang GP, Sanders L, Lau LF", "protein_xref_pubmed", "2355916", "protein_xref_refseq", "NP_034646.1" ], [ "Q8VDU0-1", "Legumain-deficient macrophages promote senescence of tumor cells by sustaining JAK1/STAT1 activation.", "Cancer letters", "2020 Mar 1", 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March CA, Titlow WB, Sengoku T, Breheny P, Matsunami H, McClintock TS", "protein_xref_pubmed", "32061665", "protein_xref_refseq", "NP_001001808.2" ], [ "Q8JZS0-1", "Regulation of mesenchymal-to-epithelial transition by PARAXIS during somitogenesis.", "Developmental dynamics : an official publication of the American Association of Anatomists", "2013 Nov", "Rowton M, Ramos P, Anderson DM, Rhee JM, Cunliffe HE, Rawls A", "protein_xref_pubmed", "24038871", "protein_xref_refseq", "NP_001034443.1" ], [ "Q91WM3-1", "Cloning and expression of PARP-3 (Adprt3) and U3-55k, two genes closely linked on mouse chromosome 9.", "Folia biologica", "2002", "Urbanek P, Paces J, Kralova J, Dvorak M, Paces V", "protein_xref_pubmed", "12448766", "protein_xref_refseq", "NP_663595.1" ], [ "Q8VE91-4", "Mutations in FAM134B, encoding a newly identified Golgi protein, cause severe sensory and autonomic neuropathy.", "Nature genetics", "2009 Nov", "Kurth I, Pamminger T, Hennings JC, Soehendra D, Huebner AK, 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1", "Tona R, Chen W, Nakano Y, Reyes LD, Petralia RS, Wang YX, Starost MF, Wafa TT, Morell RJ, Cravedi KD, du Hoffmann J, Miyoshi T, Munasinghe JP, Fitzgerald TS, Chudasama Y, Omori K, Pierpaoli C, Banfi B, Dong L, Belyantseva IA, Friedman TB", "protein_xref_pubmed", "30602030", "protein_xref_refseq", "NP_081162.1" ], [ "Q3V0I2-1", "Normal Development and Function of T Cells in Proline Rich 7 (Prr7) Deficient Mice.", "PloS one", "2016", "Hrdinka M, Sudan K, Just S, Drobek A, Stepanek O, Schluter D, Reinhold D, Jordan BA, Gintschel P, Schraven B, Kreutz MR", "protein_xref_pubmed", "27657535", "protein_xref_refseq", "NP_001025467.1" ], [ "Q9ES28-1", "BayGenomics: a resource of insertional mutations in mouse embryonic stem cells.", "Nucleic acids research", "2003 Jan 1", "Stryke D, Kawamoto M, Huang CC, Johns SJ, King LA, Harper CA, Meng EC, Lee RE, Yee A, L'Italien L, Chuang PT, Young SG, Skarnes WC, Babbitt PC, Ferrin TE", "protein_xref_pubmed", "12520002", "protein_xref_refseq", 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imprinting region of mouse chromosome 2 are not monoallelically expressed.", "Genetical research", "1995 Apr", "Williamson CM, Dutton ER, Abbott CM, Beechey CV, Ball ST, Peters J", "protein_xref_pubmed", "7781998", "protein_xref_refseq", "NP_034126.1" ], [ "O35927-1", "Cellular heterogeneity in the ureteric progenitor niche and distinct profiles of branching morphogenesis in organ development.", "Development (Cambridge, England)", "2017 Sep 1", "Rutledge EA, Benazet JD, McMahon AP", "protein_xref_pubmed", "28705898", "protein_xref_refseq", "NP_032755.2" ], [ "Q6ZPF4-1", "Genome-wide identification of Smad/Foxh1 targets reveals a role for Foxh1 in retinoic acid regulation and forebrain development.", "Developmental cell", "2008 Mar", "Silvestri C, Narimatsu M, von Both I, Liu Y, Tan NB, Izzi L, McCaffery P, Wrana JL, Attisano L", "protein_xref_pubmed", "18331719", "protein_xref_refseq", "NP_001297551.1" ], [ "Q8VCB2-1", "MED25 is distinct from TRAP220/MED1 in cooperating with CBP for 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Mouse Protein Citations (RefSeq)\n\nVersion\n - 1.8.24\n\nCreated on\n - 2019-09-06T14:06:38.962804\n\nModified on\n - 2020-04-10T12:45:40.582715\n\nCreated by\n - Jeet Vora [jeetvora@gwu.edu], Rahi Navelkar [rsn13@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Xavier Holmes [xavierh@email.gwu.edu]\n\nAuthors\n - \n\nChecksum\n - \n\nUsability Domain\n - The Mouse Protein Citations (RefSeq) datasets contains mouse [taxid:10090] UniProtKB accessions mapped to publication information (pmid, title, journal name, publication, date, authors of corresponding RefSeq accessions. The dataset is derived from NCBI RefSeq Release 96, September 9, 2019. If you use this dataset please provide proper attribution to NCBI RefSeq and GlyGen\n\nDescription Domain\n Keywords\n - PMID\n - journal\n - citations\n - authors\n - RefSeq\n - PubMed\n\n Pipeline Steps\n - Step-1: The script parses the NCBI RefSeq gpff files to extract the publication information. The script also maps RefSeq accesion to the UniProtKB Canonical accessions\n\nExecution Domain\n Scripts - https://github.com/GW-HIVE/glygen-backend-integration/blob/master/pipeline/integrator/make-protein-dataset.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: refseq_protein_all_10090.gpff\n URI: https://data.glygen.org/ln2data/releases/data/v-1.8.24/source/refseq_protein_all_10090.gpff\n Name: mouse_protein_xref_refseq.csv\n URI: https://data.glygen.org/ln2data/releases/data/v-1.8.24/reviewed/mouse_protein_xref_refseq.csv\n Output Subdomain\n Name: mouse_protein_citations_refseq.csv\n URI: http://data.glygen.org/ln2data/releases/data/v-1.8.24/reviewed/mouse_protein_citations_refseq.csv\n Name: mouse_protein_citations_refseq.stat.csv\n URI: http://data.glygen.org/ln2data/releases/data/v-1.8.24/reviewed/mouse_protein_citations_refseq.stat.csv\n\nFields\n Name: \"src_xref_key\"\n Description: \"Source Xref key\"\n Unique Values: \"1\"\n Name: \"xref_id\"\n Description: \"ID of the X-ref\"\n Unique Values: \"119\"\n Name: \"title\"\n Description: \"Title of the published article in the journal\"\n Unique Values: \"119\"\n Name: \"src_xref_id\"\n Description: \"Source X-ref ID\"\n Unique Values: \"120\"\n Name: \"journal_name\"\n Description: \"The name of the journal in which the article is published\"\n Unique Values: \"49\"\n Name: \"authors\"\n Description: \"NA\"\n Unique Values: \"118\"\n Name: \"publication_date\"\n Description: \"Contains the full date on which the issue of the journal was published. Sourced from MEDLINE/PubMed data element(fields) description.\"\n Unique Values: \"117\"\n Name: \"glytoucan_ac\"\n Description: \"Unique accession assigned to the registered glycan structure in GlyTouCan database\"\n Unique Values: \"115\"\n Name: \"xref_key\"\n Description: \"Source key associated to the xref_id\"\n Unique Values: \"1\"", "downloadurl": "/ln2data/releases/data/v-1.8.24/reviewed/mouse_protein_citations_refseq.csv" }