{ "glycoprotein": [ { "residue": "Asn", "uniprot_canonical_ac": "P49792-1", "protein_name": "E3 SUMO-protein ligase RanBP2", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P49792/annotated", "id": "P49792", "database": "UniCarbKB" }, { "url": "https://www.ncbi.nlm.nih.gov/pubmed/26791533", "id": "26791533", "database": "PubMed" } ], "start_pos": 831, "tax_name": "Homo sapiens", "end_pos": 831, "gene_name": "RANBP2", "tax_id": 9606 } ], "number_monosaccharides": 16, "inchi_key": {}, "classification": [ { "subtype": { "url": "", "name": "Other" }, "type": { "url": "", "name": "Other" } } ], "mass_pme": 3654.85, "names": [ { "domain": "UniCarbKB (Short)", "name": "HexNAc6Hex7dHex2NeuAc1" }, { "domain": "Byonic", "name": "HexNAc(6)Hex(7)dHex(2)NeuAc(1)" }, { "domain": "UniCarbKB", "name": "HexNAc6Hex7dHex2NeuAc1NeuGc0Pent0S0P0KDN0HexA0" } ], "fully_determined": "", "keywords": [], "wurcs": 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"species": [ { "common_name": "Human", "annotation_category": "Direct", "evidence": [ { "url": "http://www.unicarbkb.org/structure/UniCarbKB", "id": "UniCarbKB", "database": "UniCarbKB" } ], "taxid": 9606, "name": "Homo sapiens" } ], "publication": [ { "reference": [ { "url": "https://www.ncbi.nlm.nih.gov/pubmed/26791533", "type": [ "PubMed" ], "id": "26791533" } ], "title": "N-Glycoproteomics of Human Seminal Plasma Glycoproteins.", "journal": "Journal of proteome research", "evidence": [ { "url": "http://unicarbkb.org/query", "id": "comp_HexNAc6Hex7dHex2NeuAc1NeuGc0Pent0S0P0KDN0HexA0", "database": "UniCarbKB" }, { "url": "http://unicarbkb.org/proteinsummary/P49792/annotated", "id": "P49792", "database": "UniCarbKB" } ], "authors": "Saraswat M, Joenvaara S, Tomar AK, Singh S, Yadav S, Renkonen R", "date": "2016" } ], "subsumption": [ { "type": "basecomposition", "id": "G48144YJ", "relationship": "basecomposition" }, { "type": "composition", "id": "G02447BS", "relationship": "composition" } ], "enzyme": [], "motifs": [], "glytoucan_ac": "G02447BS", "composition": [ { "residue": "neugc", "count": 0, "url": "https://pubchem.ncbi.nlm.nih.gov/compound/440001", "name": "N-Glycolyl-Neuraminic Acid", "cid": "440001" }, { "residue": "hexn", "count": 0, "url": "https://pubchem.ncbi.nlm.nih.gov/compound/739", "name": "2-Amino-2-Deoxy-Hexose", "cid": "739" }, { "residue": "hex", "count": 7, "url": "https://pubchem.ncbi.nlm.nih.gov/compound/206", "name": "Hexose", "cid": "206" }, { "residue": "hexa", "count": 0, "url": "https://pubchem.ncbi.nlm.nih.gov/compound/610", "name": "Hexuronic Acid", "cid": "610" }, { "residue": "neuac", "count": 1, "url": "https://pubchem.ncbi.nlm.nih.gov/compound/439197", "name": "N-Acetyl-Neuraminic Acid", "cid": "439197" }, { "residue": "dhex", "count": 2, "url": "https://pubchem.ncbi.nlm.nih.gov/compound/840", "name": "6-Deoxy-Hexose", "cid": "840" }, { "residue": "p", "count": 0, "url": "https://pubchem.ncbi.nlm.nih.gov/compound/1061", "name": "Phosphate", "cid": "1061" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hexnac", "count": 6, "url": "https://pubchem.ncbi.nlm.nih.gov/compound/899", "name": "N-Acetylhexosamine", "cid": "899" }, { "residue": "s", "count": 0, "url": "https://pubchem.ncbi.nlm.nih.gov/compound/1117", "name": "Sulfate", "cid": "1117" } ], "interactions": [], "residues": [], "glycam": "", "inchi": "", "crossref": [ { "url": "https://www.glygen.org/glycan/G02447BS", "id": "G02447BS", "database": "GNOme" }, { "url": "https://glytoucan.org/Structures/Glycans/G02447BS", "id": "G02447BS", "database": "GlyTouCan" }, { "url": "http://unicarbkb.org/query", "id": "comp_HexNAc6Hex7dHex2NeuAc1NeuGc0Pent0S0P0KDN0HexA0", "database": "UniCarbKB" } ], "tool_support": { "sandbox": "no", "gnome": "yes" }, "glycoct": "RES 1b:x-HEX-x:x 2b:x-HEX-x:x 3b:x-HEX-x:x 4b:x-HEX-x:x 5b:x-HEX-x:x 6b:x-HEX-x:x 7b:x-HEX-x:x 8b:x-HEX-x:x 9s:n-acetyl 10b:x-HEX-x:x 11s:n-acetyl 12b:x-HEX-x:x 13s:n-acetyl 14b:x-HEX-x:x 15s:n-acetyl 16b:x-HEX-x:x 17s:n-acetyl 18b:x-HEX-x:x 19s:n-acetyl 20b:x-dgro-dgal-NON-x:x|1:a|2:keto|3:d 21s:n-acetyl 22b:x-HEX-x:x|6:d 23b:x-HEX-x:x|6:d LIN 1:8d(2+1)9n 2:10d(2+1)11n 3:12d(2+1)13n 4:14d(2+1)15n 5:16d(2+1)17n 6:18d(2+1)19n 7:20d(5+1)21n", "iupac": "", "smiles_isomeric": "", "mass": 2954.07, "expression": [] }