{ "usecases": { "species_to_glycosyltransferases": { "organism": [ { "id": 10090, "name": "Mus musculus" }, { "id": 10116, "name": "Rattus norvegicus" }, { "id": 9606, "name": "Homo sapiens" } ] }, "species_to_glycoproteins": { "organism": [ { "evidence_type": [ "reported" ], "id": 63746, "name": "Hepatitis C virus (isolate H)" }, { "evidence_type": [ "predicted" ], "id": 10116, "name": "Rattus norvegicus" }, { "evidence_type": [ "reported" ], "id": 9606, "name": "Homo sapiens" }, { "evidence_type": [ "predicted" ], "id": 10090, "name": "Mus musculus" }, { "evidence_type": [ "reported", "predicted", "both" ], "id": 11116, "name": "Hepatitis C virus (isolate Japanese)" }, { "evidence_type": [ "reported" ], "id": 694009, "name": "Severe acute respiratory syndrome-related coronavirus" }, { "evidence_type": [ "predicted" ], "id": 2697049, "name": "Severe acute respiratory syndrome coronavirus 2" } ] }, "species_to_glycohydrolases": { "organism": [ { "id": 10090, "name": "Mus musculus" }, { "id": 10116, "name": "Rattus norvegicus" }, { "id": 9606, "name": "Homo sapiens" } ] } }, "supersearch": { "motif": 120, "enzyme": 708, "disease": 740, "glycan": 33715, "site": 567980, "protein": 64219, "gene": 64219, "species": 9 }, "site": { "aa_type_list": [ { "id": "A", "label": "Alanine - Ala - A" }, { "id": "C", "label": "Cysteine - Cys - C" }, { "id": "E", "label": "Glutamic acid - Glu - E" }, { "id": "D", "label": "Aspartic acid - Asp - D" }, { "id": "G", "label": "Glycine - Gly - G" }, { "id": "F", "label": "Phenylalanine - Phe - F" }, { "id": "I", "label": "Isoleucine - Ile - I" }, { "id": "H", "label": "Histidine - His - H" }, { "id": "K", "label": "Lysine - Lys - K" }, { "id": "M", "label": "Methionine - Met - M" }, { "id": "L", "label": "Leucine - Leu - L" }, { "id": "N", "label": "Asparagine - Asn - N" }, { "id": "Q", "label": "Glutamine - Gln - Q" }, { "id": "P", "label": "Proline - Pro - P" }, { "id": "S", "label": "Serine - Ser - S" }, { "id": "R", "label": "Arginine - Arg - R" }, { "id": "U", "label": "" }, { "id": "T", "label": "Threonine - Thr - T" }, { "id": "W", "label": "Tryptophan - Trp - W" }, { "id": "V", "label": "Valine - Val - V" }, { "id": "Y", "label": "Tyrosine - Tyr - Y" } ], "annotation_type_list": [ { "id": "snv", "label": "SNV" }, { "id": "glycosylation", "label": "Glycosylation" }, { "id": "mutagenesis", "label": "Mutagenesis" }, { "id": "phosphorylation", "label": "Phosphorylation" }, { "id": "site_annotation", "label": "Site Annotation" }, { "id": "glycation", "label": "Glycation" } ] }, "glycan": { "glycan_type": [ { "subtype": [ "N-linked core-fucosylated", "N-linked bisected", "N-linked truncated", "Other", "N-linked complex", "N-linked hybrid", "N-linked paucimannose", "N-linked high mannose" ], "name": "N-linked" }, { "subtype": [ "Glycosphingolipid muco series", "Glycosphingolipid lacto series", "Glycosphingolipid ganglio series", "Glycosphingolipid mollu series", "Glycosphingolipid arthro series", "Glycosphingolipid gala series", "Glycosphingolipid isoglobo series", "Glycosphingolipid neo-lacto series", "Glycosphingolipid globo series" ], "name": "Glycosphingolipid" }, { "subtype": [ "O-linked core 7", "O-linked core 6", "O-linked core 5", "O-linked core 4", "O-linked core 3", "O-linked core 2", "O-linked core 1", "O-linked O-mannose", "O-linked O-fucose" ], "name": "O-linked" }, { "subtype": [ "Other" ], "name": "Other" } ], "number_monosaccharides": { "max": 37, "min": 1 }, "glycan_mass": { "permethylated": { "max": 8306.19, "name": "Permethylated", "min": 206.12 }, "native": { "max": 6750.45, "name": "Native", "min": 150.05 } }, "organism": [ { "name": "Severe acute respiratory syndrome coronavirus 2", "id": 2697049 }, { "name": "Hepatitis C virus (isolate H)", "id": 63746 }, { "name": "Homo sapiens", "id": 9606 }, { "name": "Rattus norvegicus", "id": 10116 }, { "name": "Mus musculus", "id": 10090 } ], "composition": [ { "residue": "neugc", "max": 5, "url": "https://pubchem.ncbi.nlm.nih.gov/compound/440001", "min": 0 }, { "residue": "dhex", "max": 7, "url": "https://pubchem.ncbi.nlm.nih.gov/compound/840", "min": 0 }, { "residue": "hexa", "max": 6, "url": "https://pubchem.ncbi.nlm.nih.gov/compound/610", "min": 0 }, { "residue": "hexn", "max": 2, "url": "https://pubchem.ncbi.nlm.nih.gov/compound/739", "min": 0 }, { "residue": "hex", "max": 15, "url": "https://pubchem.ncbi.nlm.nih.gov/compound/206", "min": 0 }, { "residue": "neuac", "max": 6, "url": "https://pubchem.ncbi.nlm.nih.gov/compound/439197", "min": 0 }, { "residue": "p", "max": 2, "url": "https://pubchem.ncbi.nlm.nih.gov/compound/1061", "min": 0 }, { "residue": "s", "max": 5, "url": "https://pubchem.ncbi.nlm.nih.gov/compound/1117", "min": 0 }, { "residue": "other", "max": 6, "url": "https://pubchem.ncbi.nlm.nih.gov/compound/", "min": 0 }, { "residue": "hexnac", "max": 14, "url": "https://pubchem.ncbi.nlm.nih.gov/compound/899", "min": 0 } ], "simple_search_category": [ { "id": "any", "display": "Any" }, { "id": "glycan", "display": "Glycan" }, { "id": "protein", "display": "Protein" }, { "id": "enzyme", "display": "Enzyme" }, { "id": "organism", "display": "Organism" } ] }, "idmapping": { "protein": { "namespace": [ { "source": "UniProtKB", "targetlist": [ "MIM", "BRENDA", "PANTHER", "PHAROS", "KEGG Pathway", "RGD", "OrthoDB", "neXtProt", "euHCVdb", "RefSeq", "PRO", "HepatitisCOnline", "Bgee", "ChEMBL", "GeneCards", "Pfam", "O-GlcNAc MCW", "GlycoProtDB", "Reactome", "IntAct", "PDB", "BioMuta", "CDD", "OMA", "InterPro", "ViPR", "MGI", "UniCarbKB", "GeneID", "CAZy", "HGNC" ] }, { "source": "MIM", "targetlist": [ "UniProtKB", "BRENDA", "PANTHER", "PHAROS", "neXtProt", "OrthoDB", "KEGG Pathway", "RefSeq", "PRO", "Bgee", "ChEMBL", "GeneCards", "Pfam", "O-GlcNAc MCW", "Reactome", "IntAct", "PDB", "BioMuta", "CDD", "OMA", "InterPro", "UniCarbKB", "HGNC", "CAZy", "GeneID" ] }, { "source": "BRENDA", "targetlist": [ "UniProtKB", "MIM", "PANTHER", "PHAROS", "neXtProt", "RGD", "OrthoDB", "KEGG Pathway", "euHCVdb", "RefSeq", "PRO", "HepatitisCOnline", "Bgee", "ChEMBL", "GeneCards", "Pfam", "O-GlcNAc MCW", "GlycoProtDB", "Reactome", "IntAct", "PDB", "BioMuta", "CDD", "OMA", "InterPro", "ViPR", "MGI", "UniCarbKB", "HGNC", "CAZy", "GeneID" ] }, { "source": "PANTHER", "targetlist": [ "UniProtKB", "MIM", "BRENDA", "PHAROS", "neXtProt", "RGD", "OrthoDB", "KEGG Pathway", "RefSeq", "PRO", "Bgee", "ChEMBL", "GeneCards", "Pfam", "O-GlcNAc MCW", "GlycoProtDB", "Reactome", "IntAct", "PDB", "BioMuta", "CDD", "OMA", "InterPro", "MGI", "UniCarbKB", "HGNC", "CAZy", "GeneID" ] }, { "source": "PHAROS", "targetlist": [ "UniProtKB", "MIM", "BRENDA", "PANTHER", "neXtProt", "OrthoDB", "KEGG Pathway", "RefSeq", "PRO", "Bgee", "ChEMBL", "GeneCards", "Pfam", "O-GlcNAc MCW", "Reactome", "IntAct", "PDB", "BioMuta", "CDD", "OMA", "InterPro", "UniCarbKB", "HGNC", "CAZy", "GeneID" ] }, { "source": "KEGG Pathway", "targetlist": [ "UniProtKB", "MIM", "BRENDA", "PANTHER", "PHAROS", "RGD", "OrthoDB", "neXtProt", "RefSeq", "PRO", "Bgee", "ChEMBL", "GeneCards", "Pfam", "O-GlcNAc MCW", "GlycoProtDB", "Reactome", "IntAct", "PDB", "BioMuta", "CDD", "OMA", "InterPro", "MGI", "UniCarbKB", "GeneID", "CAZy", "HGNC" ] }, { "source": "RGD", "targetlist": [ "Pfam", "CDD", "OMA", "InterPro", "BRENDA", "PANTHER", "PRO", "IntAct", "UniCarbKB", "PDB", "UniProtKB", "Bgee", "ChEMBL", "OrthoDB", "KEGG Pathway", "Reactome", "CAZy", "RefSeq", "GeneID" ] }, { "source": "OrthoDB", "targetlist": [ "UniProtKB", "MIM", "BRENDA", "PANTHER", "PHAROS", "KEGG Pathway", "RGD", "neXtProt", "RefSeq", "PRO", "Bgee", "ChEMBL", "GeneCards", "Pfam", "O-GlcNAc MCW", "GlycoProtDB", "Reactome", "IntAct", "PDB", "BioMuta", "CDD", "OMA", "InterPro", "MGI", "UniCarbKB", "GeneID", "CAZy", "HGNC" ] }, { "source": "neXtProt", "targetlist": [ "UniProtKB", "MIM", "BRENDA", "PANTHER", "PHAROS", "OrthoDB", "KEGG Pathway", "RefSeq", "PRO", "Bgee", "ChEMBL", "GeneCards", "Pfam", "O-GlcNAc MCW", "Reactome", "IntAct", "PDB", "BioMuta", "CDD", "OMA", "InterPro", "UniCarbKB", "HGNC", "CAZy", "GeneID" ] }, { "source": "euHCVdb", "targetlist": [ "Pfam", "InterPro", "ViPR", "BRENDA", "HepatitisCOnline", "UniProtKB", "IntAct", "PDB" ] }, { "source": "RefSeq", "targetlist": [ "UniProtKB", "MIM", "BRENDA", "PANTHER", "PHAROS", "KEGG Pathway", "RGD", "OrthoDB", "neXtProt", "PRO", "Bgee", "ChEMBL", "GeneCards", "Pfam", "O-GlcNAc MCW", "GlycoProtDB", "Reactome", "IntAct", "PDB", "BioMuta", "CDD", "OMA", "InterPro", "MGI", "UniCarbKB", "GeneID", "CAZy", "HGNC" ] }, { "source": "PRO", "targetlist": [ "UniProtKB", "MIM", "BRENDA", "PANTHER", "PHAROS", "KEGG Pathway", "RGD", "OrthoDB", "neXtProt", "RefSeq", "Bgee", "ChEMBL", "GeneCards", "Pfam", "O-GlcNAc MCW", "GlycoProtDB", "Reactome", "IntAct", "PDB", "BioMuta", "CDD", "OMA", "InterPro", "MGI", "UniCarbKB", "GeneID", "CAZy", "HGNC" ] }, { "source": "HepatitisCOnline", "targetlist": [ "Pfam", "InterPro", "euHCVdb", "ViPR", "BRENDA", "UniProtKB", "IntAct", "PDB" ] }, { "source": "Bgee", "targetlist": [ "UniProtKB", "MIM", "BRENDA", "PANTHER", "PHAROS", "KEGG Pathway", "RGD", "OrthoDB", "neXtProt", "RefSeq", "PRO", "ChEMBL", "GeneCards", "Pfam", "O-GlcNAc MCW", "GlycoProtDB", "Reactome", "IntAct", "PDB", "BioMuta", "CDD", "OMA", "InterPro", "MGI", "UniCarbKB", "GeneID", "CAZy", "HGNC" ] }, { "source": "ChEMBL", "targetlist": [ "UniProtKB", "MIM", "BRENDA", "PANTHER", "PHAROS", "neXtProt", "RGD", "OrthoDB", "KEGG Pathway", "RefSeq", "PRO", "Bgee", "GeneCards", "Pfam", "O-GlcNAc MCW", "GlycoProtDB", "Reactome", "IntAct", "PDB", "BioMuta", "CDD", "OMA", "InterPro", "MGI", "UniCarbKB", "HGNC", "CAZy", "GeneID" ] }, { "source": "GeneCards", "targetlist": [ "UniProtKB", "MIM", "BRENDA", "PANTHER", "PHAROS", "neXtProt", "OrthoDB", "KEGG Pathway", "RefSeq", "PRO", "Bgee", "ChEMBL", "Pfam", "O-GlcNAc MCW", "Reactome", "IntAct", "PDB", "BioMuta", "CDD", "OMA", "InterPro", "UniCarbKB", "HGNC", "CAZy", "GeneID" ] }, { "source": "Pfam", "targetlist": [ "UniProtKB", "MIM", "BRENDA", "PANTHER", "PHAROS", "KEGG Pathway", "RGD", "OrthoDB", "neXtProt", "euHCVdb", "RefSeq", "PRO", "HepatitisCOnline", "Bgee", "ChEMBL", "GeneCards", "O-GlcNAc MCW", "GlycoProtDB", "Reactome", "IntAct", "PDB", "BioMuta", "CDD", "OMA", "InterPro", "ViPR", "MGI", "UniCarbKB", "GeneID", "CAZy", "HGNC" ] }, { "source": "O-GlcNAc MCW", "targetlist": [ "UniProtKB", "MIM", "BRENDA", "PANTHER", "PHAROS", "neXtProt", "OrthoDB", "KEGG Pathway", "RefSeq", "PRO", "Bgee", "ChEMBL", "GeneCards", "Pfam", "Reactome", "IntAct", "PDB", "BioMuta", "CDD", "OMA", "InterPro", "UniCarbKB", "HGNC", "CAZy", "GeneID" ] }, { "source": "GlycoProtDB", "targetlist": [ "Pfam", "CDD", "OMA", "InterPro", "Reactome", "BRENDA", "PANTHER", "MGI", "IntAct", "UniCarbKB", "PDB", "CAZy", "UniProtKB", "ChEMBL", "OrthoDB", "KEGG Pathway", "RefSeq", "PRO", "Bgee", "GeneID" ] }, { "source": "Reactome", "targetlist": [ "UniProtKB", "MIM", "BRENDA", "PANTHER", "PHAROS", "KEGG Pathway", "RGD", "OrthoDB", "neXtProt", "RefSeq", "PRO", "Bgee", "ChEMBL", "GeneCards", "Pfam", "O-GlcNAc MCW", "GlycoProtDB", "IntAct", "PDB", "BioMuta", "CDD", "OMA", "InterPro", "MGI", "UniCarbKB", "GeneID", "CAZy", "HGNC" ] }, { "source": "IntAct", "targetlist": [ "UniProtKB", "MIM", "BRENDA", "PANTHER", "PHAROS", "KEGG Pathway", "RGD", "OrthoDB", "neXtProt", "euHCVdb", "RefSeq", "PRO", "HepatitisCOnline", "Bgee", "ChEMBL", "GeneCards", "Pfam", "O-GlcNAc MCW", "GlycoProtDB", "Reactome", "PDB", "BioMuta", "CDD", "OMA", "InterPro", "ViPR", "MGI", "UniCarbKB", "GeneID", "CAZy", "HGNC" ] }, { "source": "PDB", "targetlist": [ "UniProtKB", "MIM", "BRENDA", "PANTHER", "PHAROS", "neXtProt", "RGD", "OrthoDB", "KEGG Pathway", "euHCVdb", "RefSeq", "PRO", "HepatitisCOnline", "Bgee", "ChEMBL", "GeneCards", "Pfam", "O-GlcNAc MCW", "GlycoProtDB", "Reactome", "IntAct", "BioMuta", "CDD", "OMA", "InterPro", "ViPR", "MGI", "UniCarbKB", "HGNC", "CAZy", "GeneID" ] }, { "source": "BioMuta", "targetlist": [ "UniProtKB", "MIM", "BRENDA", "PANTHER", "PHAROS", "neXtProt", "OrthoDB", "KEGG Pathway", "RefSeq", "PRO", "Bgee", "ChEMBL", "GeneCards", "Pfam", "O-GlcNAc MCW", "Reactome", "IntAct", "PDB", "CDD", "OMA", "InterPro", "UniCarbKB", "HGNC", "CAZy", "GeneID" ] }, { "source": "CDD", "targetlist": [ "UniProtKB", "MIM", "BRENDA", "PANTHER", "PHAROS", "KEGG Pathway", "RGD", "OrthoDB", "neXtProt", "RefSeq", "PRO", "Bgee", "ChEMBL", "GeneCards", "Pfam", "O-GlcNAc MCW", "GlycoProtDB", "Reactome", "IntAct", "PDB", "BioMuta", "OMA", "InterPro", "MGI", "UniCarbKB", "GeneID", "CAZy", "HGNC" ] }, { "source": "OMA", "targetlist": [ "UniProtKB", "MIM", "BRENDA", "PANTHER", "PHAROS", "KEGG Pathway", "RGD", "OrthoDB", "neXtProt", "RefSeq", "PRO", "Bgee", "ChEMBL", "GeneCards", "Pfam", "O-GlcNAc MCW", "Reactome", "IntAct", "PDB", "BioMuta", "CDD", "GlycoProtDB", "InterPro", "MGI", "UniCarbKB", "GeneID", "CAZy", "HGNC" ] }, { "source": "InterPro", "targetlist": [ "UniProtKB", "MIM", "BRENDA", "PANTHER", "PHAROS", "KEGG Pathway", "RGD", "OrthoDB", "neXtProt", "euHCVdb", "RefSeq", "PRO", "HepatitisCOnline", "Bgee", "ChEMBL", "GeneCards", "Pfam", "O-GlcNAc MCW", "GlycoProtDB", "Reactome", "IntAct", "PDB", "BioMuta", "CDD", "OMA", "ViPR", "MGI", "UniCarbKB", "GeneID", "CAZy", "HGNC" ] }, { "source": "ViPR", "targetlist": [ "Pfam", "InterPro", "euHCVdb", "BRENDA", "HepatitisCOnline", "UniProtKB", "IntAct", "PDB" ] }, { "source": "MGI", "targetlist": [ "CDD", "Pfam", "OMA", "InterPro", "Reactome", "BRENDA", "CAZy", "PANTHER", "PRO", "ChEMBL", "UniCarbKB", "GlycoProtDB", "PDB", "UniProtKB", "OrthoDB", "KEGG Pathway", "RefSeq", "IntAct", "Bgee", "GeneID" ] }, { "source": "UniCarbKB", "targetlist": [ "UniProtKB", "MIM", "BRENDA", "PANTHER", "PHAROS", "KEGG Pathway", "RGD", "OrthoDB", "neXtProt", "RefSeq", "PRO", "Bgee", "ChEMBL", "GeneCards", "Pfam", "O-GlcNAc MCW", "GlycoProtDB", "Reactome", "IntAct", "PDB", "BioMuta", "CDD", "OMA", "InterPro", "MGI", "GeneID", "CAZy", "HGNC" ] }, { "source": "GeneID", "targetlist": [ "UniProtKB", "MIM", "BRENDA", "PANTHER", "PHAROS", "KEGG Pathway", "RGD", "OrthoDB", "neXtProt", "RefSeq", "PRO", "Bgee", "ChEMBL", "GeneCards", "Pfam", "O-GlcNAc MCW", "GlycoProtDB", "Reactome", "IntAct", "PDB", "BioMuta", "CDD", "OMA", "InterPro", "MGI", "UniCarbKB", "CAZy", "HGNC" ] }, { "source": "CAZy", "targetlist": [ "UniProtKB", "MIM", "BRENDA", "PANTHER", "PHAROS", "KEGG Pathway", "RGD", "OrthoDB", "neXtProt", "RefSeq", "PRO", "Bgee", "ChEMBL", "GeneCards", "Pfam", "O-GlcNAc MCW", "GlycoProtDB", "Reactome", "IntAct", "PDB", "BioMuta", "CDD", "OMA", "InterPro", "MGI", "UniCarbKB", "GeneID", "HGNC" ] }, { "source": "HGNC", "targetlist": [ "UniProtKB", "MIM", "BRENDA", "PANTHER", "PHAROS", "neXtProt", "OrthoDB", "KEGG Pathway", "RefSeq", "PRO", "Bgee", "ChEMBL", "GeneCards", "Pfam", "O-GlcNAc MCW", "Reactome", "IntAct", "PDB", "BioMuta", "CDD", "OMA", "InterPro", "UniCarbKB", "CAZy", "GeneID" ] } ], "id": "protein", "label": "Protein" }, "glycan": { "namespace": [ { "source": "KEGG Glycan", "targetlist": [ "reactome", "Glycosciences.de", "PubChem Substance", "GlyConnect", "GlyTouCan", "GlycoEpitope", "UniCarbKB", "UniCarbDB", "MatrixDB", "SandBox", "CarbBank", "CFG", "Rhea", "PubChem Compound", "BCSDB", "ChEBI", "PDB", "GNOme" ] }, { "source": "Glycosciences.de", "targetlist": [ "KEGG Glycan", "PubChem Substance", "GlyConnect", "GlyTouCan", "GlycoEpitope", "UniCarbKB", "UniCarbDB", "MatrixDB", "Rhea", "SandBox", "CarbBank", "CFG", "BCSDB", "PubChem Compound", "reactome", "ChEBI", "PDB", "GNOme" ] }, { "source": "GNOme", "targetlist": [ "KEGG Glycan", "Glycosciences.de", "PubChem Substance", "GlyConnect", "GlyTouCan", "BCSDB", "UniCarbKB", "UniCarbDB", "MatrixDB", "SandBox", "CarbBank", "CFG", "Rhea", "PubChem Compound", "reactome", "ChEBI", "PDB", "GlycoEpitope" ] }, { "source": "GlyConnect", "targetlist": [ "KEGG Glycan", "Glycosciences.de", "PubChem Substance", "GlycoEpitope", "GlyTouCan", "BCSDB", "UniCarbKB", "UniCarbDB", "SandBox", "CarbBank", "CFG", "Rhea", "PubChem Compound", "reactome", "ChEBI", "PDB", "GNOme" ] }, { "source": "GlyTouCan", "targetlist": [ "KEGG Glycan", "Glycosciences.de", "GNOme", "GlyConnect", "CFG", "GlycoEpitope", "UniCarbKB", "UniCarbDB", "MatrixDB", "SandBox", "CarbBank", "BCSDB", "Rhea", "PubChem Compound", "reactome", "ChEBI", "PDB", "PubChem Substance" ] }, { "source": "GlycoEpitope", "targetlist": [ "KEGG Glycan", "Glycosciences.de", "PubChem Substance", "GlyConnect", "GlyTouCan", "BCSDB", "UniCarbKB", "UniCarbDB", "MatrixDB", "SandBox", "CarbBank", "CFG", "Rhea", "PubChem Compound", "reactome", "ChEBI", "PDB", "GNOme" ] }, { "source": "UniCarbKB", "targetlist": [ "KEGG Glycan", "Glycosciences.de", "PubChem Substance", "GlyConnect", "GlyTouCan", "GlycoEpitope", "UniCarbDB", "Rhea", "SandBox", "CarbBank", "CFG", "BCSDB", "PubChem Compound", "reactome", "ChEBI", "PDB", "GNOme" ] }, { "source": "UniCarbDB", "targetlist": [ "KEGG Glycan", "CFG", "Glycosciences.de", "PubChem Substance", "GlycoEpitope", "GlyTouCan", "UniCarbKB", "SandBox", "reactome", "CarbBank", "BCSDB", "Rhea", "PubChem Compound", "GlyConnect", "ChEBI", "PDB", "GNOme" ] }, { "source": "MatrixDB", "targetlist": [ "KEGG Glycan", "Glycosciences.de", "GNOme", "GlycoEpitope", "GlyTouCan", "CarbBank", "BCSDB", "PubChem Compound", "ChEBI", "PubChem Substance" ] }, { "source": "Rhea", "targetlist": [ "KEGG Glycan", "Glycosciences.de", "PubChem Substance", "GlyConnect", "GlyTouCan", "GlycoEpitope", "UniCarbKB", "UniCarbDB", "CarbBank", "CFG", "BCSDB", "PubChem Compound", "reactome", "ChEBI", "PDB", "GNOme" ] }, { "source": "SandBox", "targetlist": [ "KEGG Glycan", "Glycosciences.de", "GNOme", "GlyConnect", "GlyTouCan", "BCSDB", "UniCarbKB", "UniCarbDB", "CarbBank", "CFG", "PubChem Compound", "reactome", "ChEBI", "PDB", "GlycoEpitope", "PubChem Substance" ] }, { "source": "CarbBank", "targetlist": [ "KEGG Glycan", "Glycosciences.de", "PubChem Substance", "GlyConnect", "GlyTouCan", "GlycoEpitope", "UniCarbKB", "UniCarbDB", "MatrixDB", "Rhea", "SandBox", "CFG", "BCSDB", "PubChem Compound", "reactome", "ChEBI", "PDB", "GNOme" ] }, { "source": "CFG", "targetlist": [ "KEGG Glycan", "Glycosciences.de", "PubChem Substance", "GlyConnect", "GlyTouCan", "GlycoEpitope", "UniCarbKB", "UniCarbDB", "SandBox", "CarbBank", "BCSDB", "Rhea", "PubChem Compound", "reactome", "ChEBI", "PDB", "GNOme" ] }, { "source": "BCSDB", "targetlist": [ "KEGG Glycan", "Glycosciences.de", "GNOme", "GlyConnect", "GlyTouCan", "GlycoEpitope", "UniCarbKB", "UniCarbDB", "MatrixDB", "SandBox", "CarbBank", "CFG", "Rhea", "PubChem Compound", "reactome", "ChEBI", "PDB", "PubChem Substance" ] }, { "source": "PubChem Compound", "targetlist": [ "KEGG Glycan", "Glycosciences.de", "PubChem Substance", "GlyConnect", "CFG", "GlycoEpitope", "UniCarbKB", "UniCarbDB", "MatrixDB", "Rhea", "SandBox", "CarbBank", "GlyTouCan", "BCSDB", "reactome", "ChEBI", "PDB", "GNOme" ] }, { "source": "reactome", "targetlist": [ "KEGG Glycan", "Glycosciences.de", "GNOme", "GlyConnect", "GlyTouCan", "GlycoEpitope", "UniCarbKB", "UniCarbDB", "Rhea", "SandBox", "CarbBank", "CFG", "BCSDB", "PubChem Compound", "ChEBI", "PDB", "PubChem Substance" ] }, { "source": "ChEBI", "targetlist": [ "KEGG Glycan", "Glycosciences.de", "PubChem Substance", "GlyConnect", "GlyTouCan", "GlycoEpitope", "UniCarbKB", "UniCarbDB", "MatrixDB", "Rhea", "SandBox", "CarbBank", "CFG", "BCSDB", "PubChem Compound", "reactome", "PDB", "GNOme" ] }, { "source": "PDB", "targetlist": [ "KEGG Glycan", "Glycosciences.de", "PubChem Substance", "GlyConnect", "GlyTouCan", "BCSDB", "UniCarbKB", "UniCarbDB", "SandBox", "CarbBank", "CFG", "Rhea", "PubChem Compound", "reactome", "ChEBI", "GlycoEpitope", "GNOme" ] }, { "source": "PubChem Substance", "targetlist": [ "KEGG Glycan", "Glycosciences.de", "GNOme", "GlyConnect", "CFG", "BCSDB", "UniCarbKB", "UniCarbDB", "MatrixDB", "SandBox", "CarbBank", "GlyTouCan", "Rhea", "PubChem Compound", "reactome", "ChEBI", "PDB", "GlycoEpitope" ] } ], "id": "glycan", "label": "Glycan" } }, "fieldlimits": { "proteinsearch": { "Interacting Glycan": 8, "Simple Search": 1000, "GO ID": 10, "Pathway ID": 13, "Protein Name": 0, "Protein or Peptide Sequence": 35213, "Gene Name": 237, "RefSeq Accession": 14, "Pubmed ID": 1, "GO Name": 187, "UniProtKB Accession": 12 }, "globalsearch": { "Global Search": 1000 }, "glycansearch": { "Glycosylated Protein": 12, "Simple Search": 1000, "Glycan Motif": 38, "Pubmed ID": 1, "Biosynthetic Enzyme": 8, "Glycan ID": 53 } }, "protein": { "organism": [ { "name": "Mus musculus", "id": 10090 }, { "name": "Rattus norvegicus", "id": 10116 }, { "name": "Severe acute respiratory syndrome-related coronavirus", "id": 694009 }, { "name": "Hepatitis C virus (isolate H)", "id": 63746 }, { "name": "Severe acute respiratory syndrome coronavirus 2", "id": 2697049 }, { "name": "Hepatitis C virus (isolate Japanese)", "id": 11116 }, { "name": "Homo sapiens", "id": 9606 } ], "glycosylation_types": [ "N-linked", "S-linked", "O-linked", "C-linked" ], "protein_mass": { "max": 3906488.0, "min": 260.0 }, "aa_list": [ { "name": "Cysteine - Cys - C", "key": "C" }, { "name": "Aspartic acid - Asp - D", "key": "D" }, { "name": "Serine - Ser - S", "key": "S" }, { "name": "Lysine - Lys - K", "key": "K" }, { "name": "Threonine - Thr - T", "key": "T" }, { "name": "Asparagine - Asn - N", "key": "N" }, { "name": "Arginine - Arg - R", "key": "R" }, { "name": "Tryptophan - Trp - W", "key": "W" }, { "name": "Glutamic acid - Glu - E", "key": "E" }, { "name": "Tyrosine - Tyr - Y", "key": "Y" } ], "simple_search_category": [ { "id": "any", "display": "Any" }, { "id": "glycan", "display": "Glycan" }, { "id": "protein", "display": "Protein" }, { "id": "gene", "display": "Gene" }, { "id": "organism", "display": "Organism" }, { "id": "disease", "display": "Disease" }, { "id": "pathway", "display": "Pathway" } ] } }