1|GLYG-1340|API for ID mapping 1|GLYG-1410|API changes for cell line, tissue data 1|GLYG-1413|API changes for ID tracking data on glycan page 1|GLYG-1414|API changes for ID tracking data on protein page 1|GLYG-1427|Support disease synonymes in simple search 1|GLYG-1428|Support disease synonymes in global search 1|GLYG-1422|Simple and global search by glycan names 1|GLYG-1421|API changes to search by glycosylation type in protein simple search 1|GLYG-1420|API changes to search by glycosylation type in protein advanced search 1|GLYG-1332|API changes for proteoform data (PRO data) --> check after data push 1|GLYG-1419|API changes for proteoform crossref --> check after data push 1|GLYG-1417|Modular implementation of scoring scheme 1|GLYG-1418|Spec and API changes for Scoring 1|GLYG-X|idtracking property in glycan/protein detail response 1|GLYG-X|input_idlist should be string by comma 1|GLYG-X|organism will not be required 1|GLYG-X|idmapping search response: from, to, anchor --- top level legends 1|GLYG-X|unmapped change to object least ("inputid":"xx", "reason":"invalid xxx") 1|GLYG-XXX|include glycosylation types in protein search init 1|GLYG-XX|add "Gene" to "simple_search_category" property in /protein/search_init 1|GLYG-XXX|modify idmapping search method 1|GLYG-XX|create API for Nathan to get all published glytoucan list to production ?|GLYG-1407|Revise common search API (Supersearch) 1|GLYG-1408|Implement quick search init web service 1|GLYG-XX|sorting issue (sorting in one direction doesn't work) 1|GLYG-XX|avoid hit_score issues 1|GLYG-XX|Initial counts and list_ids for the supersearch 1|GLYG-1447|weekly|Process new data- glycan citations from ncfg 1|GLYG-1448|weekly|update glyconnect data (download link changed) 1|GLYG-1449|weekly|process new data - sandbox 1|GLYG-1458|weekly|update PubChem-ChEBI data (download link and processing process changed) 1|GLYG-1461|weekly|Generate CLO-Cellosaurus_id mapping file. (internal use) 1|GLYG-1462|weekly|Map cellosaurus_id to cell line name and clo_id 1|GLYG-1488|weekly|update unicarbkb download path 1|GLYG-1487|weekly|process disease data from glycosmos 1|GLYG-XXXX|input from file upload 1|GLYG-XXXX|talk to Dacian about docker startup 1|GLYG-XXXX|redeploy 1.7 frontend to beta prod 1|GLYG-XXXX|query in cacheinfo for idmapping 1|GLYG-XXXX|don't return list_id for motif in supersearch 1|GLYG-XXXX|result summary with supersearch list API 1|GLYG-XXXX|all list APIs should be the same (query obj) genelocus/orthologus 1|GLYG-1424|API changes to store glycosylation as range 0|GLYG-XXXX|contact email format issue not-needed|GLYG-1425|API change to support glycosylation range in site view 1|GLYG-1494|Remove predicted glycosylation entries that have reported information 1|GLYG-1495|Adding the sequon for N-linked glycosites and sequon type ?|GLYG-1496|Changes in the SNV datasets 1|GLYG-1497|Update datasets 1|GLYG-1501|Change in xref_key xred_id for o_glcnac_mcw.csv 1|GLYG-1498|Create sarscov2_protein_info_refseq.csv 1|GLYG-1499|Change in Tax ID 1|GLYG-1464|Change the default text in WebVOwl to reflect GlyGen details 1|GLYG-XXX|list_id for supsearch_init 1|GLYG-XXX|label from species to Organisms in superseaerch 1|GLYG-XXX|list of aggregation operators (NAND, NOR, AND, OR are basic required) 1|GLYG-XXX|order of conditions and concepts (sujeet will send example) 1|GLYG-XXX|P14210-1.294.294 site detail API missing all_sites (and others) properities 1|GLYG-XXX|Make sure that glycosylation section has start_pos and end_pos in protein detail 1|GLYG-XXX|Descripancy between init paths and monogdb paths in supersearch 1|GLYG-XXX|Field name labels in supersearch init 1|GLYG-XXX|value for "id" show be lower case in supersearch init 1|GLYG-XXX|motif, site and enzyme concepts do not have fields 1|GLYG-XXX|species count in the supersearch init is 9 opposed to 7 1|GLYG-XXX|enzyme number is same as protein number in supersearch init (not correct) 1|GLYG-XXX|concept results merging startegy (AND vs OR) 1|GLYG-XXX|download protein list is failing 1|GLYG-XXX|idmapping list download (idmapping_mapped_list and idmapping_unmapped_list) 1|GLYG-XXX|when using species in query, use organism concept ?|GLYG-XXX|when using disease in query, use disease concept 1|GLYG-XXX|empty query supersearch should return entire/init numbers and list_ids 1|GLYG-XXX|return error code if unexpected query structure is submitted in supersearch 1|GLYG-XXX|motif_list download objects should be the same as motif_list response 1|GLYG-XXX|idmapping download unmapped download is not coming right 1|GLYG-XXX|if supersearch results is empty, respond with init obj with 0 results 1|GLYG-XXX|go over ignore list for supersearch_init ?|GLYG-XXX|NOR is possible but NAND cannot be done from my side 1|GLYG-XXX|supersearch issue https://api.tst.glygen.org/supersearch/search?query=[{%22concept%22:%22protein%22,%22query%22:{%22aggregator%22:%22$and%22,%22aggregated_list%22:[],%22unaggregated_list%22:[{%22path%22:%22uniprot_ac%22,%22order%22:0,%22operator%22:%22$eq%22,%22string_value%22:%22P14210%22}]}},{%22concept%22:%22site%22,%22query%22:{%22aggregator%22:%22$and%22,%22aggregated_list%22:[],%22unaggregated_list%22:[{%22path%22:%22start_pos%22,%22order%22:0,%22operator%22:%22$eq%22,%22numeric_value%22:%22294%22},{%22path%22:%22end_pos%22,%22order%22:1,%22operator%22:%22$eq%22,%22numeric_value%22:%22294%22},{%22path%22:%22glycosylation%22,%22order%22:2,%22operator%22:%22$eq%22,%22string_value%22:[]}]}}] 1|GLYG-XXX|idmapping download not working for mapped (see email) 1|GLYG-XXX|Can you please send typeahead field values in super search init api for glycan id, protein id so that we can implement the front end part of type ahead. 1|GLYG-XXX|pages home_init stats duplicated 0|GLYG-XXX|add site_seq to site records 0|GLYG-XXX| why does G19619KS has "removed" history 0|GLYG-XXX|make every record have history (introduced date/version) 0|GLYG-XXX|some site records do not have any site information (all snv, gltcosylation ... lists are empty -- filter out such site records altogether) ?|GLYG-XXX|add association flag in supersearch 0|GLYG-XXX|https://docs.google.com/spreadsheets/d/1fVG14c6EjTqdVcWJlFh4sMxZrgnCXZYKGgjkRAYaL08/edit?usp=sharing 0|GLYG-XXX|idmapping to glytoucan and uniprotkb (add these resources in crossref) 0|GLYG-XXX|id mapping dynamic from-to 0|GLYG-XXX|protein alignment API for isoformset.uniprokb (example accession) 0|GLYG-XXX|implement hit_score for site search 0|GLYG-XXX|data download for orthogs_list and genelocus_list 0|GLYG-1540|The new download options Raja requested and we discussed yesterday 0|GLYG-1541|Supersearch ticket which information in protein should be queried for disease information