{
    "io_domain": {
        "input_subdomain": [
            {
                "uri": {
                    "uri": "https://data.glygen.org/ln2wwwdata/source/refseq_protein_all_viral.gpff", 
                    "filename": "refseq_protein_all_viral.gpff"
                }
            }, 
            {
                "uri": {
                    "uri": "https://data.glygen.org/ln2wwwdata/reviewed/sarscov1_protein_xref_refseq.csv", 
                    "filename": "sarscov1_protein_xref_refseq.csv"
                }
            }
        ], 
        "output_subdomain": [
            {
                "mediatype": "csv", 
                "uri": {
                    "uri": "http://data.glygen.org/ln2wwwdata/reviewed/sarscov1_protein_genenames_refseq.csv", 
                    "filename": "sarscov1_protein_genenames_refseq.csv"
                }
            }, 
            {
                "mediatype": "csv", 
                "uri": {
                    "uri": "http://data.glygen.org/ln2wwwdata/reviewed/sarscov1_protein_genenames_refseq.stat.csv", 
                    "filename": "sarscov1_protein_genenames_refseq.stat.csv"
                }
            }
        ]
    }, 
    "spec_version": "1.3.0", 
    "object_id": "https://biocomputeobject.org/GLY_000423/1.7.13", 
    "extension_domain": [
        {
            "extension_schema": "http://www.w3id.org/biocompute/extension_domain/1.1.0/dataset/dataset_extension.json", 
            "dataset_extension": {
                "additional_license": {
                    "data_license": "https://creativecommons.org/licenses/by/4.0/", 
                    "script_license": "https://www.gnu.org/licenses/gpl-3.0.en.html"
                }, 
                "dataset_categories": [
                    {
                        "category_value": "SARS coronavirus (SARS-CoV-1)", 
                        "category_name": "species"
                    }, 
                    {
                        "category_value": "Protein", 
                        "category_name": "molecule"
                    }, 
                    {
                        "category_value": "Protein Information", 
                        "category_name": "tags"
                    }, 
                    {
                        "category_value": "csv", 
                        "category_name": "file_type"
                    }, 
                    {
                        "category_value": "Reviewed", 
                        "category_name": "status"
                    }, 
                    {
                        "category_value": "internal", 
                        "category_name": "scope"
                    }
                ]
            }
        }
    ], 
    "provenance_domain": {
        "license": "", 
        "name": "SARS-CoV1 Gene Symbols (NCBI RefSeq)", 
        "contributors": [
            {
                "affiliation": "The George Washington University", 
                "contribution": [
                    "createdBy"
                ], 
                "name": "Jeet Vora", 
                "email": "jeetvora@gwu.edu"
            }, 
            {
                "affiliation": "The George Washington University", 
                "contribution": [
                    "createdBy"
                ], 
                "name": "Rahi Navelkar", 
                "email": "rsn13@gwu.edu"
            }, 
            {
                "affiliation": "The George Washington University", 
                "contribution": [
                    "createdBy"
                ], 
                "name": "Robel Kahsay", 
                "email": "rykahsay@gwu.edu"
            }
        ], 
        "created": "2020-03-15T13:32:44.009025", 
        "modified": "2020-04-09T18:42:13.145095", 
        "version": "1.7.13"
    }, 
    "description_domain": {
        "keywords": [
            "protein gene symbols", 
            "protein gene names", 
            "NCBI RefSeq"
        ], 
        "pipeline_steps": [
            {
                "name": "make-protein-dataset.py", 
                "step_number": 1, 
                "version": "", 
                "input_list": [
                    {
                        "uri": "https://data.glygen.org/ln2wwwdata/reviewed/sarscov1_protein_xref_refseq.csv", 
                        "filename": "sarscov1_protein_xref_refseq.csv"
                    }, 
                    {
                        "uri": "https://data.glygen.org/ln2wwwdata/source/refseq_protein_all_viral.gpff", 
                        "filename": "refseq_protein_all_viral.gpff"
                    }
                ], 
                "output_list": [
                    {
                        "uri": "https://data.glygen.org/ln2wwwdata/reviewed/sarscov1_protein_genenames_refseq.csv", 
                        "filename": "sarscov1_protein_genenames_refseq.csv"
                    }
                ], 
                "prerequisite": [], 
                "description": "The script parses the NCBI RefSeq gpff files to extract the gene symbols/names and then maps the NCBI RefSeq accesion to the UniProtKB Canonical accessions"
            }
        ]
    }, 
    "execution_domain": {
        "external_data_endpoints": [], 
        "environment_variables": {}, 
        "script_driver": "manual", 
        "software_prerequisites": [
            {
                "version": "2.7.5", 
                "name": "Python", 
                "uri": {
                    "uri": "https://www.python.org/download/releases/2.7.5/"
                }
            }
        ], 
        "script": [
            {
                "uri": {
                    "uri": "https://github.com/glygener/glygen-backend-integration/blob/master/pipeline/integrator/make-protein-dataset.py", 
                    "filename": "make-protein-dataset.py"
                }
            }
        ]
    }, 
    "error_domain": {
        "empirical_error": {}, 
        "algorithmic_error": {}, 
        "emperical_error": {}
    }, 
    "parametric_domain": [
        {
            "step": "", 
            "value": "", 
            "param": ""
        }
    ], 
    "usability_domain": [
        "The SARS coronavirus (SARS-CoV-1) Gene Symbols (NCBI RefSeq) dataset contains sarscov1 [taxid:9606] gene symbols/names (primary gene name and gene synonyms)  from NCBI RefSeq database. The dataset is derived from NCBI RefSeq Release 96, September 9, 2019. The dataset is derived from NCBI RefSeq Release 96, September 9, 2019. If you use this dataset please provide proper attribution to NCBI RefSeq and GlyGen"
    ], 
    "etag": "ab3eb82e859b94c573bd514ad5d7d988", 
    "_id": "5e86b6eaf5c47b1eb76ea8c7"
}