{ "bcoid": "GLY_000285", "title": "Glycan citations", "description": "The dataset provides citations for the associated glycan (GlyTouCan Accession) from GlyTouCan and UniCarbKB ...", "filename": "glycan_citations_glytoucan.csv", "filetype": "csv", "categories": { "molecule": "Glycan", "tags": "Citations", "status": "Reviewed", "file_type": "csv", "scope": "internal" }, "minitable": { "content": [ [ "G00031MO...", "Contulakin-G..." ], [ "G00031MO...", "Expression o..." ] ], "headers": [ "glytoucan_ac...", "title..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "glytoucan_ac" }, { "type": "string", "label": "title" }, { "type": "string", "label": "journal_name" }, { "type": "string", "label": "publication_date" }, { "type": "string", "label": "authors" }, { "type": "string", "label": "xref_key" }, { "type": "string", "label": "xref_id" }, { "type": "string", "label": "src_xref_key" }, { "type": "string", "label": "src_xref_id" } ], [ "G00031MO", "Contulakin-G, an O-glycosylated invertebrate neurotensin.", "The Journal of biological chemistry", "1999 May 14", "Craig AG, Norberg T, Griffin D, Hoeger C, Akhtar M, Schmidt K, Low W, Dykert J, Richelson E, Navarro V, Mazella J, Watkins M, Hillyard D, Imperial J, Cruz LJ, Olivera BM", "protein_xref_pubmed", "10318778", "glycan_xref_unicarbkb", "4" ], [ "G00031MO", "Expression of sialyl-Tn, Tn and T antigens in primary liver cancer.", "Pathology international", "1999 Apr", "Sasaki M, Yamato T, Nakanuma Y", "protein_xref_pubmed", "10365852", "glycan_xref_glytoucan", "G00031MO" ], [ "G00031MO", "Novel glycosylated forms of human plasma endostatin and circulating endostatin-related fragments of collagen XV.", "Biochemistry", "1999 Aug 10", "John H, Preissner KT, Forssmann WG, Standker L", "protein_xref_pubmed", "10441114", "glycan_xref_unicarbkb", "4" ], [ "G00031MO", "Immunoreactivity of Thomsen-Friedenreich (TF) antigen in human neoplasms: the importance of carrier-specific glycotope expression on MUC1.", "Histology and histopathology", "1999 Oct", "Baldus SE, Hanisch FG, Monaca E, Karsten UR, Zirbes TK, Thiele J, Dienes HP", "protein_xref_pubmed", "10506931", "glycan_xref_glytoucan", "G00031MO" ], [ "G00031MO", "Chromogranin A from bovine adrenal medulla: molecular characterization of glycosylations, phosphorylations, and sequence heterogeneities by mass spectrometry.", "Analytical biochemistry", "1999 Oct 1", "Bauer SH, Zhang XY, Van Dongen W, Claeys M, Przybylski M", "protein_xref_pubmed", "10527498", "glycan_xref_unicarbkb", "4" ], [ "G00031MO", "Metabolic shifts do not influence the glycosylation patterns of a recombinant fusion protein expressed in BHK cells.", "Biotechnology and bioengineering", "2000 Jul 20", "Cruz HJ, Peixoto CM, Nimtz M, Alves PM, Dias EM, Moreira JL, Carrondo MJ", "protein_xref_pubmed", "10861392", "glycan_xref_unicarbkb", "4" ], [ "G00031MO", "O-glycan analysis of natural human neutrophil gelatinase B using a combination of normal phase-HPLC and online tandem mass spectrometry: implications for the domain organization of the enzyme.", "Biochemistry", "2000 Dec 26", "Mattu TS, Royle L, Langridge J, Wormald MR, Van den Steen PE, Van Damme J, Opdenakker G, Harvey DJ, Dwek RA, Rudd PM", "protein_xref_pubmed", "11123894", "glycan_xref_unicarbkb", "4" ], [ "G00031MO", "Lymph node metastasis-related carbohydrate epitopes of gastric cancer with submucosal invasion.", "Surgery today", "2000", "Takano Y, Teranishi Y, Terashima S, Motoki R, Kawaguchi T", "protein_xref_pubmed", "11193738", "glycan_xref_glytoucan", "G00031MO" ], [ "G00031MO", "Posttranslational modifications of microfibril associated glycoprotein-1 (MAGP-1).", "Biochemistry", "2001 Apr 10", "Trask BC, Broekelmann T, Ritty TM, Trask TM, Tisdale C, Mecham RP", "protein_xref_pubmed", "11284693", "glycan_xref_unicarbkb", "4" ], [ "G00031MO", "Structural elucidation of the N- and O-glycans of human apolipoprotein(a): role of o-glycans in conferring protease resistance.", "The Journal of biological chemistry", "2001 Jun 22", "Garner B, Merry AH, Royle L, Harvey DJ, Rudd PM, Thillet J", "protein_xref_pubmed", "11294842", "glycan_xref_unicarbkb", "4" ], [ "G00031MO", "Expression of the Thomsen-Friedenreich (TF) antigen in the human placenta.", "Anticancer research", "2000 Nov-Dec", "Richter DU, Jeschke U, Makovitzky J, Goletz S, Karsten U, Briese V, Friese K", "protein_xref_pubmed", "11326683", "glycan_xref_glytoucan", "G00031MO" ], [ "G00031MO", "Overexpression of sialyltransferase CMP-sialic acid:Galbeta1,3GalNAc-R alpha6-Sialyltransferase is related to poor patient survival in human colorectal carcinomas.", "Cancer research", "2001 Jun 1", "Schneider F, Kemmner W, Haensch W, Franke G, Gretschel S, Karsten U, Schlag PM", "protein_xref_pubmed", "11389097", "glycan_xref_glytoucan", "G00031MO" ], [ "G00031MO", "Immunohistochemical expression of T, Tn and sialyl-Tn antigens and clinical outcome in human breast carcinoma.", "Anticancer research", "2001 Mar-Apr", "Imai J, Ghazizadeh M, Naito Z, Asano G", "protein_xref_pubmed", "11396208", "glycan_xref_glytoucan", "G00031MO" ], [ "G00031MO", "The role of Thomsen-Friedenreich antigen in adhesion of human breast and prostate cancer cells to the endothelium.", "Cancer research", "2001 Jun 15", "Glinsky VV, Glinsky GV, Rittenhouse-Olson K, Huflejt ME, Glinskii OV, Deutscher SL, Quinn TP", "protein_xref_pubmed", "11406562", "glycan_xref_glytoucan", "G00031MO" ], [ "G00031MO", "In vivo glycosylation of mucin tandem repeats.", "Glycobiology", "2001 Jun", "Silverman HS, Parry S, Sutton-Smith M, Burdick MD, McDermott K, Reid CJ, Batra SK, Morris HR, Hollingsworth MA, Dell A, Harris A", "protein_xref_pubmed", "11445551", "glycan_xref_unicarbkb", "4" ], [ "G00031MO", "Cell surface-expressed Thomsen-Friedenreich antigen in colon cancer is predominantly carried on high molecular weight splice variants of CD44.", "Glycobiology", "2001 Jul", "Singh R, Campbell BJ, Yu LG, Fernig DG, Milton JD, Goodlad RA, FitzGerald AJ, Rhodes JM", "protein_xref_pubmed", "11447138", "glycan_xref_glytoucan", "G00031MO" ], [ "G00031MO", "Expression of mucin-associated carbohydrate core antigens in esophageal squamous cell carcinomas.", "Anticancer research", "2001 May-Jun", "Flucke U, Zirbes TK, Schroder W, Monig SP, Koch V, Schmitz K, Thiele J, Dienes HP, Holscher AH, Baldus SE", "protein_xref_pubmed", "11501845", "glycan_xref_glytoucan", "G00031MO" ], [ "G00031MO", "Immunoreactivity of monoclonal antibody BW835 represents a marker of progression and prognosis in early gastric cancer.", "Oncology", "2001", "Baldus SE, Zirbes TK, Glossmann J, Fromm S, Hanisch FG, Monig SP, Schroder W, Schneider PM, Flucke U, Karsten U, Thiele J, Holscher AH, Dienes HP", "protein_xref_pubmed", "11528254", "glycan_xref_glytoucan", "G00031MO" ], [ "G00031MO", "SRCL/CL-P1 recognizes GalNAc and a carcinoma-associated antigen, Tn antigen.", "Journal of biochemistry", "2003 Mar", "Yoshida T, Tsuruta Y, Iwasaki M, Yamane S, Ochi T, Suzuki R", "protein_xref_pubmed", "12761161", "glycan_xref_glytoucan", "G00031MO" ], [ "G00031MO", "Structural basis of the carbohydrate specificities of jacalin: an X-ray and modeling study.", "Journal of molecular biology", "2003 Sep 5", "Jeyaprakash AA, Katiyar S, Swaminathan CP, Sekar K, Surolia A, Vijayan M", "protein_xref_pubmed", "12946359", "glycan_xref_glytoucan", "G00031MO" ], [ "G00031MO", "[The new ophthalmologic hospital in Djeddah (Arabia)].", "Techniques hospitalieres, medico-sociales et sanitaires", "1952 May", "RULE L", "protein_xref_pubmed", "12995288", "glycan_xref_glytoucan", "G00031MO" ], [ "G00031MO", "Studies on the Thomsen-Friedenreich antigen in human colon with the lectin Amaranthin. Normal and neoplastic epithelium express only cryptic T antigen.", "Laboratory investigation; a journal of technical methods and pathology", "1992 Feb", "Sata T, Roth J, Zuber C, Stamm B, Rinderle SJ, Goldstein IJ, Heitz PU", "protein_xref_pubmed", "1370965", "glycan_xref_glytoucan", "G00031MO" ], [ "G00031MO", "The carbohydrate chains of the beta subunit of human chorionic gonadotropin produced by the choriocarcinoma cell line BeWo. Novel O-linked and novel bisecting-GlcNAc-containing N-linked carbohydrates.", "European journal of biochemistry", "1992 Apr 15", "Hard K, Damm JB, Spruijt MP, Bergwerff AA, Kamerling JP, Van Dedem GW, Vliegenthart JF", "protein_xref_pubmed", "1374031", "glycan_xref_unicarbkb", "4" ], [ "G00031MO", "Carbohydrate structure of Marburg virus glycoprotein.", "Glycobiology", "1992 Aug", "Geyer H, Will C, Feldmann H, Klenk HD, Geyer R", "protein_xref_pubmed", "1421752", "glycan_xref_unicarbkb", "4" ], [ "G00031MO", "Murine and human zona pellucida 3 derived from mouse eggs express identical O-glycans.", "Proceedings of the National Academy of Sciences of the United States of America", "2003 Dec 23", "Dell A, Chalabi S, Easton RL, Haslam SM, Sutton-Smith M, Patankar MS, Lattanzio F, Panico M, Morris HR, Clark GF", "protein_xref_pubmed", "14673092", "glycan_xref_unicarbkb", "4" ], [ "G00031MO", "Rhesus monkey gastric mucins: oligomeric structure, glycoforms and Helicobacter pylori binding.", "The Biochemical journal", "2004 May 1", "Linden S, Boren T, Dubois A, Carlstedt I", "protein_xref_pubmed", "14736333", "glycan_xref_glytoucan", "G00031MO" ], [ "G00031MO", "Recognition profile of Bauhinia purpurea agglutinin (BPA).", "Life sciences", "2004 Feb 20", "Wu AM, Wu JH, Liu JH, Singh T", "protein_xref_pubmed", "14741734", "glycan_xref_glytoucan", "G00031MO" ], [ "G00031MO", "Human urinary bladder carcinoma glycoconjugates expressing T-(Gal beta(1-3)GalNAc alpha 1-O-R) and T-like antigens: a comparative study using peanut agglutinin and poly- and monoclonal antibodies.", "Cancer research", "1992 Sep 15", "Langkilde NC, Wolf H, Clausen H, Orntoft TF", "protein_xref_pubmed", "1516058", "glycan_xref_glytoucan", "G00031MO" ], [ "G00031MO", "Unexpected mortality in pediatric patients with postoperative Hirschsprung's disease.", "Pediatric surgery international", "2004 Jul", "Wang JS, Lee HC, Huang FY, Chang PY, Sheu JC", "protein_xref_pubmed", "15179519", "glycan_xref_glytoucan", "G00031MO" ], [ "G00031MO", "Thomsen-Friedenreich (T) antigen expression increases sensitivity of natural killer cell lysis of cancer cells.", "International journal of cancer", "2004 Sep 1", "Sotiriadis J, Shin SC, Yim D, Sieber D, Kim YB", "protein_xref_pubmed", "15221966", "glycan_xref_glytoucan", "G00031MO" ], [ "G00031MO", "Primary structure and function of novel O-glycosylated hirudins from the leech Hirudinaria manillensis.", "Biochemistry", "1992 Mar 3", "Steiner V, Knecht R, Bornsen KO, Gassmann E, Stone SR, Raschdorf F, Schlaeppi JM, Maschler R", "protein_xref_pubmed", "1540584", "glycan_xref_unicarbkb", "4" ], [ "G00031MO", "Role of the human ST6GalNAc-I and ST6GalNAc-II in the synthesis of the cancer-associated sialyl-Tn antigen.", "Cancer research", "2004 Oct 1", "Marcos NT, Pinho S, Grandela C, Cruz A, Samyn-Petit B, Harduin-Lepers A, Almeida R, Silva F, Morais V, Costa J, Kihlberg J, Clausen H, Reis CA", "protein_xref_pubmed", "15466199", "glycan_xref_glytoucan", "G00031MO" ], [ "G00031MO", "The potential role of tau protein O-glycosylation in Alzheimer's disease.", "Journal of Alzheimer's disease : JAD", "2004 Oct", "Robertson LA, Moya KL, Breen KC", "protein_xref_pubmed", "15505370", "glycan_xref_glytoucan", "G00031MO" ], [ "G00031MO", "Distribution of HPV infection and tumour markers in cervical intraepithelial neoplasia from cone biopsies of Mozambican women.", "Journal of clinical pathology", "2005 Jan", "Carrilho C, Cirnes L, Alberto M, Buane L, Mendes N, David L", "protein_xref_pubmed", "15623485", "glycan_xref_glytoucan", "G00031MO" ], [ "G00031MO", "Antibodies against tumor cell glycolipids and proteins, but not mucins, mediate complement-dependent cytotoxicity.", "Journal of immunology (Baltimore, Md. : 1950)", "2005 May 1", "Ragupathi G, Liu NX, Musselli C, Powell S, Lloyd K, Livingston PO", "protein_xref_pubmed", "15843572", "glycan_xref_glytoucan", "G00031MO" ], [ "G00031MO", "IgA1 is the premier serum glycoprotein recognized by human galectin-1 since T antigen (Galbeta1-->3GalNAc-) is far superior to non-repeating N-acetyl lactosamine as ligand.", "International journal of biological macromolecules", "2005 Jun", "Sangeetha SR, Appukuttan PS", "protein_xref_pubmed", "15862866", "glycan_xref_glytoucan", "G00031MO" ], [ "G00031MO", "Polyvalent GalNAcalpha1-->Ser/Thr (Tn) and Galbeta1-->3GalNAcalpha1-->Ser/Thr (T alpha) as the most potent recognition factors involved in Maclura pomifera agglutinin-glycan interactions.", "Journal of biomedical science", "2005", "Wu AM", "protein_xref_pubmed", "15864746", "glycan_xref_glytoucan", "G00031MO" ], [ "G00031MO", "Immune response to Thomsen-Friedenreich disaccharide and glycan engineering.", "Immunology and cell biology", "2005 Aug", "Irazoqui FJ, Sendra VG, Lardone RD, Nores GA", "protein_xref_pubmed", "16033536", "glycan_xref_glytoucan", "G00031MO" ], [ "G00031MO", "Elucidation of binding specificity of Jacalin toward O-glycosylated peptides: quantitative analysis by frontal affinity chromatography.", "Glycobiology", "2006 Jan", "Tachibana K, Nakamura S, Wang H, Iwasaki H, Tachibana K, Maebara K, Cheng L, Hirabayashi J, Narimatsu H", "protein_xref_pubmed", "16177266", "glycan_xref_glytoucan", "G00031MO" ], [ "G00031MO", "Thomsen-Friedenreich and Tn antigens in nipple fluid: carbohydrate biomarkers for breast cancer detection.", "Clinical cancer research : an official journal of the American Association for Cancer Research", "2005 Oct 1", "Kumar SR, Sauter ER, Quinn TP, Deutscher SL", "protein_xref_pubmed", "16203776", "glycan_xref_glytoucan", "G00031MO" ], [ "G00031MO", "Mucin characteristics of human corneal-limbal epithelial cells that exclude the rose bengal anionic dye.", "Investigative ophthalmology & visual science", "2006 Jan", "Argueso P, Tisdale A, Spurr-Michaud S, Sumiyoshi M, Gipson IK", "protein_xref_pubmed", "16384952", "glycan_xref_glytoucan", "G00031MO" ], [ "G00031MO", "The influence of N- and O-glycosylation inhibitors on the glycosylation profile of cellular membrane proteins and adhesive properties of carcinoma cell lines.", "International journal of molecular medicine", "2006 Apr", "Paszkiewicz-Gadek A, Porowska H, Lemancewicz D, Wolczynski S, Gindzienski A", "protein_xref_pubmed", "16525726", "glycan_xref_glytoucan", "G00031MO" ], [ "G00031MO", "Elevated Golgi pH in breast and colorectal cancer cells correlates with the expression of oncofetal carbohydrate T-antigen.", "Journal of cellular physiology", "2006 Jul", "Rivinoja A, Kokkonen N, Kellokumpu I, Kellokumpu S", "protein_xref_pubmed", "16547942", "glycan_xref_glytoucan", "G00031MO" ], [ "G00031MO", "H-deficient Bombay and para-Bombay red blood cells are most strongly agglutinated by the galactophilic lectins of Aplysia and Pseudomonas aeruginosa that detect I and P1 antigens.", "Immunohematology", "2006", "Gilboa-Garber N, Sudakevitz D, Levene C, Rahimi-Levene N, Yahalom V", "protein_xref_pubmed", "16563047", "glycan_xref_glytoucan", "G00031MO" ], [ "G00031MO", "Interference with O-glycosylation in RMA lymphoma cells leads to a reduced in vivo growth of the tumor.", "International journal of cancer", "2006 Sep 15", "Chen L, Sundback J, Olofsson S, Jondal M", "protein_xref_pubmed", "16615117", "glycan_xref_glytoucan", "G00031MO" ], [ "G00031MO", "Differential binding to glycotopes among the layers of three mammalian retinal neurons by man-containing N-linked glycan, T(alpha) (Galbeta1-3GalNAcalpha1-), Tn (GalNAcalpha1-Ser/Thr) and I (beta)/II (beta) (Galbeta1-3/4GlcNAcbeta-) reactive lectins.", "Neurochemical research", "2006 May", "Wu WC, Lai CC, Liu JH, Singh T, Li LM, Peumans WJ, Van Damme EJ, Wu AM", "protein_xref_pubmed", "16770733", "glycan_xref_glytoucan", "G00031MO" ], [ "G00031MO", "Binding of T-antigen disaccharides to Artocarpus hirsuta lectin and jacalin are energetically different.", "Photochemistry and photobiology", "2006 Sep-Oct", "Gaikwad SM, Khan MI", "protein_xref_pubmed", "16776550", "glycan_xref_glytoucan", "G00031MO" ], [ "G00031MO", "T-antigen activation for prediction of pneumococcus-induced hemolytic uremic syndrome and hemolytic anemia.", "The Pediatric infectious disease journal", "2006 Jul", "Huang DT, Chi H, Lee HC, Chiu NC, Huang FY", "protein_xref_pubmed", "16804430", "glycan_xref_glytoucan", "G00031MO" ], [ "G00031MO", "Evidence that Agaricus bisporus agglutinin (ABA) has dual sugar-binding specificity.", "Biochemical and biophysical research communications", "2006 Aug 18", "Nakamura-Tsuruta S, Kominami J, Kuno A, Hirabayashi J", "protein_xref_pubmed", "16824489", "glycan_xref_glytoucan", "G00031MO" ], [ "G00031MO", "Biological significance of cancer-associated sialyl-Tn antigen: modulation of malignant phenotype in gastric carcinoma cells.", "Cancer letters", "2007 May 8", "Pinho S, Marcos NT, Ferreira B, Carvalho AS, Oliveira MJ, Santos-Silva F, Harduin-Lepers A, Reis CA", "protein_xref_pubmed", "16965854", "glycan_xref_glytoucan", "G00031MO" ], [ "G00031MO", "Crystal structure of the galectin-9 N-terminal carbohydrate recognition domain from Mus musculus reveals the basic mechanism of carbohydrate recognition.", "The Journal of biological chemistry", "2006 Nov 24", "Nagae M, Nishi N, Murata T, Usui T, Nakamura T, Wakatsuki S, Kato R", "protein_xref_pubmed", "16990264", "glycan_xref_glytoucan", "G00031MO" ], [ "G00031MO", "Structural studies on peanut lectin complexed with disaccharides involving different linkages: further insights into the structure and interactions of the lectin.", "Acta crystallographica. Section D, Biological crystallography", "2006 Nov", "Natchiar SK, Srinivas O, Mitra N, Surolia A, Jayaraman N, Vijayan M", "protein_xref_pubmed", "17057347", "glycan_xref_glytoucan", "G00031MO" ], [ "G00031MO", "Variations in glycosylation of von Willebrand factor with O-linked sialylated T antigen are associated with its plasma levels.", "Blood", "2007 Mar 15", "van Schooten CJ, Denis CV, Lisman T, Eikenboom JC, Leebeek FW, Goudemand J, Fressinaud E, van den Berg HM, de Groot PG, Lenting PJ", "protein_xref_pubmed", "17090649", "glycan_xref_glytoucan", "G00031MO" ], [ "G00031MO", "A novel antiproliferative and antifungal lectin from Amaranthus viridis Linn seeds.", "Protein and peptide letters", "2006", "Kaur N, Dhuna V, Kamboj SS, Agrewala JN, Singh J", "protein_xref_pubmed", "17100645", "glycan_xref_glytoucan", "G00031MO" ], [ "G00031MO", "The oncofetal Thomsen-Friedenreich carbohydrate antigen in cancer progression.", "Glycoconjugate journal", "2007 Nov", "Yu LG", "protein_xref_pubmed", "17457671", "glycan_xref_glytoucan", "G00031MO" ], [ "G00031MO", "Galectin-1, an endogenous lectin produced by arterial cells, binds lipoprotein(a) [Lp(a)] in situ: relevance to atherogenesis.", "Experimental and molecular pathology", "2007 Dec", "Chellan B, Narayani J, Appukuttan PS", "protein_xref_pubmed", "17537433", "glycan_xref_glytoucan", "G00031MO" ], [ "G00031MO", "Lewis x is highly expressed in normal tissues: a comparative immunohistochemical study and literature revision.", "Pathology oncology research : POR", "2007", "Croce MV, Isla-Larrain M, Rabassa ME, Demichelis S, Colussi AG, Crespo M, Lacunza E, Segal-Eiras A", "protein_xref_pubmed", "17607374", "glycan_xref_glytoucan", "G00031MO" ], [ "G00031MO", "Structural basis for recognition of breast and colon cancer epitopes Tn antigen and Forssman disaccharide by Helix pomatia lectin.", "Glycobiology", "2007 Oct", "Lescar J, Sanchez JF, Audfray A, Coll JL, Breton C, Mitchell EP, Imberty A", "protein_xref_pubmed", "17652409", "glycan_xref_glytoucan", "G00031MO" ], [ "G00031MO", "Temporal changes in the carbohydrates expressed on BG01 human embryonic stem cells during differentiation as embryoid bodies.", "Glycoconjugate journal", "2008 Feb", "Wearne KA, Winter HC, Goldstein IJ", "protein_xref_pubmed", "17674202", "glycan_xref_glytoucan", "G00031MO" ], [ "G00031MO", "Changes in the profile of simple mucin-type O-glycans and polypeptide GalNAc-transferases in human testis and testicular neoplasms are associated with germ cell maturation and tumour differentiation.", "Virchows Archiv : an international journal of pathology", "2007 Oct", "Rajpert-De Meyts E, Poll SN, Goukasian I, Jeanneau C, Herlihy AS, Bennett EP, Skakkebaek NE, Clausen H, Giwercman A, Mandel U", "protein_xref_pubmed", "17694322", "glycan_xref_glytoucan", "G00031MO" ], [ "G00031MO", "A serial lectin approach to the mucin-type O-glycoproteome of Drosophila melanogaster S2 cells.", "Proteomics", "2007 Sep", "Schwientek T, Mandel U, Roth U, Muller S, Hanisch FG", "protein_xref_pubmed", "17708590", "glycan_xref_glytoucan", "G00031MO" ], [ "G00031MO", "Site-specific N-glycosylation of human chorionic gonadotrophin--structural analysis of glycopeptides by one- and two-dimensional 1H NMR spectroscopy.", "Glycobiology", "1991 Sep", "Weisshaar G, Hiyama J, Renwick AG", "protein_xref_pubmed", "1820200", "glycan_xref_unicarbkb", "4" ], [ "G00031MO", "Purification and characterization of a T-antigen specific lectin from the coelomic fluid of a marine invertebrate, sea cucumber (Holothuria scabra).", "Fish & shellfish immunology", "2008 Apr", "Gowda NM, Goswami U, Khan MI", "protein_xref_pubmed", "18282768", "glycan_xref_glytoucan", "G00031MO" ], [ "G00031MO", "Distribution of the alphaGal- and the non-alphaGal T-antigens in the pig kidney: potential targets for rejection in pig-to-man xenotransplantation.", "Immunology and cell biology", "2008 May-Jun", "Kirkeby S, Mikkelsen HB", "protein_xref_pubmed", "18301385", "glycan_xref_glytoucan", "G00031MO" ], [ "G00031MO", "Catfish (Clarias batrachus) serum lectin recognizes polyvalent Tn [alpha-D-GalpNAc1-Ser/Thr], Talpha [beta-D-Galp-(1-->3)-alpha-D-GalpNAc1-Ser/Thr], and II [beta-D-Galp(1-->4)-beta-D-GlcpNAc1-] mammalian glycotopes.", "Carbohydrate research", "2008 Sep 22", "Singha B, Adhya M, Chatterjee BP", "protein_xref_pubmed", "18662810", "glycan_xref_glytoucan", "G00031MO" ], [ "G00031MO", "Carbohydrate analysis of human von Willebrand factor with horseradish peroxidase-conjugated lectins.", "Biochemical and biophysical research communications", "1991 Aug 15", "Matsui T, Kihara C, Fujimura Y, Mizuochi T, Titani K", "protein_xref_pubmed", "1872845", "glycan_xref_unicarbkb", "4" ], [ "G00031MO", "Identification of the Drosophila core 1 beta1,3-galactosyltransferase gene that synthesizes T antigen in the embryonic central nervous system and hemocytes.", "Glycobiology", "2008 Dec", "Yoshida H, Fuwa TJ, Arima M, Hamamoto H, Sasaki N, Ichimiya T, Osawa K, Ueda R, Nishihara S", "protein_xref_pubmed", "18824562", "glycan_xref_glytoucan", "G00031MO" ], [ "G00031MO", "Lectin-epithelial interactions in the human colon.", "Biochemical Society transactions", "2008 Dec", "Rhodes JM, Campbell BJ, Yu LG", "protein_xref_pubmed", "19021580", "glycan_xref_glytoucan", "G00031MO" ], [ "G00031MO", "Characterization of murine MGL1 and MGL2 C-type lectins: distinct glycan specificities and tumor binding properties.", "Molecular immunology", "2009 Mar", "Singh SK, Streng-Ouwehand I, Litjens M, Weelij DR, Garcia-Vallejo JJ, van Vliet SJ, Saeland E, van Kooyk Y", "protein_xref_pubmed", "19162326", "glycan_xref_glytoucan", "G00031MO" ], [ "G00031MO", "Specific interaction of the legume lectins, concanavalin a and peanut agglutinin, with phycocyanin.", "Photochemistry and photobiology", "2009 Sep-Oct", "Pandey G, Fatma T, Komath SS", "protein_xref_pubmed", "19496993", "glycan_xref_glytoucan", "G00031MO" ], [ "G00031MO", "Altered O-glycan synthesis in lymphocytes from patients with Wiskott-Aldrich syndrome.", "The Journal of experimental medicine", "1991 Jun 1", "Piller F, Le Deist F, Weinberg KI, Parkman R, Fukuda M", "protein_xref_pubmed", "2033371", "glycan_xref_unicarbkb", "4" ], [ "G00031MO", "Occurrence of the human tumor-specific antigen structure Galbeta1-3GalNAcalpha- (Thomsen-Friedenreich) and related structures on gut bacteria: prevalence, immunochemical analysis and structural confirmation.", "Glycobiology", "2011 Oct", "Henderson G, Ulsemer P, Schober U, Loffler A, Alpert CA, Zimmermann-Kordmann M, Reutter W, Karsten U, Goletz S, Blaut M", "protein_xref_pubmed", "21551457", "glycan_xref_glytoucan", "G00031MO" ], [ "G00031MO", "Determination of site-specific glycan heterogeneity on glycoproteins.", "Nature protocols", "2012 Jun 7", "Kolarich D, Jensen PH, Altmann F, Packer NH", "protein_xref_pubmed", "22678432", "glycan_xref_unicarbkb", "4" ], [ "G00031MO", "Expression patterns of the T antigen and the cryptic T antigen in rat fetuses: detection with the lectin amaranthin.", "The journal of histochemistry and cytochemistry : official journal of the Histochemistry Society", "1990 Jun", "Sata T, Zuber C, Rinderle SJ, Goldstein IJ, Roth J", "protein_xref_pubmed", "2335739", "glycan_xref_glytoucan", "G00031MO" ], [ "G00031MO", "Glycine to aspartic acid mutations at codon 13 of the c-Ki-ras gene in human gastrointestinal cancers.", "Cancer research", "1990 Feb 1", "Nagata Y, Abe M, Kobayashi K, Yoshida K, Ishibashi T, Naoe T, Nakayama E, Shiku H", "protein_xref_pubmed", "2404571", "glycan_xref_glytoucan", "G00031MO" ], [ "G00031MO", "Preparation and characterization of monoclonal antibodies directed to the tumor-associated O-linked sialosyl-2----6 alpha-N-acetylgalactosaminyl (sialosyl-Tn) epitope.", "Cancer research", "1988 Apr 15", "Kjeldsen T, Clausen H, Hirohashi S, Ogawa T, Iijima H, Hakomori S", "protein_xref_pubmed", "2450649", "glycan_xref_glytoucan", "G00031MO" ], [ "G00031MO", "O-linked glycosylation of rat renal gamma-glutamyltranspeptidase adjacent to its membrane anchor domain.", "The Journal of biological chemistry", "1989 Dec 5", "Blochberger TC, Sabatine JM, Lee YC, Hughey RP", "protein_xref_pubmed", "2573604", "glycan_xref_unicarbkb", "4" ], [ "G00031MO", "Expression of Thomsen-Friedenreich (TF) antigens on lymphocytes. I. Distribution of cryptic and exposed TF antigens on murine lymphocytes from different lymphoid organs: detection with an anti-TF monoclonal antibody and peanut agglutinin.", "Cellular immunology", "1989 Jul", "Wolf MF, Schmitt HR, Schumacher K", "protein_xref_pubmed", "2736629", "glycan_xref_glytoucan", "G00031MO" ], [ "G00031MO", "Expression of human interleukin-2 in recombinant baby hamster kidney, Ltk-, and Chinese hamster ovary cells. Structure of O-linked carbohydrate chains and their location within the polypeptide.", "The Journal of biological chemistry", "1989 Oct 15", "Conradt HS, Nimtz M, Dittmar KE, Lindenmaier W, Hoppe J, Hauser H", "protein_xref_pubmed", "2793860", "glycan_xref_unicarbkb", "4" ], [ "G00031MO", "Expression of Tn, sialosyl-Tn, and T antigens in human colon cancer.", "Cancer research", "1989 Jan 1", "Itzkowitz SH, Yuan M, Montgomery CK, Kjeldsen T, Takahashi HK, Bigbee WL, Kim YS", "protein_xref_pubmed", "2908846", "glycan_xref_glytoucan", "G00031MO" ], [ "G00031MO", "Structural variations of O-linked oligosaccharides present in leukosialin isolated from erythroid, myeloid, and T-lymphoid cell lines.", "The Journal of biological chemistry", "1986 Sep 25", "Carlsson SR, Sasaki H, Fukuda M", "protein_xref_pubmed", "2943741", "glycan_xref_unicarbkb", "4" ], [ "G00031MO", "Human T-lymphocyte activation is associated with changes in O-glycan biosynthesis.", "The Journal of biological chemistry", "1988 Oct 15", "Piller F, Piller V, Fox RI, Fukuda M", "protein_xref_pubmed", "2971663", "glycan_xref_unicarbkb", "4" ], [ "G00031MO", "Chemical structure of neutral sugar chains isolated from human mature milk kappa-casein.", "Biochimica et biophysica acta", "1988 Feb 17", "Saito T, Itoh T, Adachi S", "protein_xref_pubmed", "3342257", "glycan_xref_unicarbkb", "4" ], [ "G00031MO", "Membrane glycophorins in Sta blood group erythrocytes.", "The Journal of biological chemistry", "1986 Apr 25", "Blumenfeld OO, Adamany AM, Kikuchi M, Sabo B, McCreary J", "protein_xref_pubmed", "3514617", "glycan_xref_unicarbkb", "4" ] ] }, "readme": "Name\n - Glycan citations\n\nVersion\n - 1.7.13\n\nCreated on\n - 2019-11-13T13:26:29.074237\n\nModified on\n - 2020-05-01T15:02:48.739748\n\nCreated by\n - Rahi Navelkar [rsn13@gwu.edu], Jeet Vora [jeetvora@gwu.edu], Robel Kahsay [rykahsay@gwu.edu]\n\nAuthors\n - Nathan Edwards [nje5@georgetown.edu]\n\nChecksum\n - \n\nUsability Domain\n - The dataset provides citations for the associated glycan (GlyTouCan Accession) from GlyTouCan and UniCarbKB database.The listed GlyTouCan Accessions are derived from the GlyTouCan accession master list (https://data.glygen.org/GLYDS000281). Source database: https://glytoucan.org/; http://www.unicarbkb.org/\n\nDescription Domain\n Keywords\n - Glycan\n - GlyTouCan Accession\n - Citations\n\n Pipeline Steps\n - Step-1: The input file was downloaded from the author and a python script is used to extract the data for the GlyTouCan accessions based on the acession master list. Refer to the usability domain for more information on master list.\n\nExecution Domain\n Scripts - https://github.com/GW-HIVE/glygen-backend-integration/blob/master/pipeline/integrator/make-species-agnostic-dataset.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: pubs.tsv\n URI: https://data.glygen.org/ln2wwwdata/source/pubs.tsv\n Output Subdomain\n Name: glycan_citations_glytoucan.csv\n URI: http://data.glygen.org/ln2wwwdata/reviewed/glycan_citations_glytoucan.csv\n Name: glycan_citations_glytoucan.stat.csv\n URI: http://data.glygen.org/ln2wwwdata/reviewed/glycan_citations_glytoucan.stat.csv\n\nFields\n Name: \"src_xref_key\"\n Description: \"Source Xref key\"\n Unique Values: \"3\"\n Name: \"xref_id\"\n Description: \"ID of the X-ref\"\n Unique Values: \"1395\"\n Name: \"title\"\n Description: \"Title of the published article in the journal\"\n Unique Values: \"1395\"\n Name: \"src_xref_id\"\n Description: \"Source X-ref ID\"\n Unique Values: \"1695\"\n Name: \"journal_name\"\n Description: \"The name of the journal in which the article is published\"\n Unique Values: \"293\"\n Name: \"authors\"\n Description: \"NA\"\n Unique Values: \"1374\"\n Name: \"publication_date\"\n Description: \"Contains the full date on which the issue of the journal was published. Sourced from MEDLINE/PubMed data element(fields) description.\"\n Unique Values: \"969\"\n Name: \"glytoucan_ac\"\n Description: \"Unique accession assigned to the registered glycan structure in GlyTouCan database\"\n Unique Values: \"1670\"\n Name: \"xref_key\"\n Description: \"Source key associated to the xref_id\"\n Unique Values: \"1\"", "downloadurl": "/ln2data/releases/data/v-1.7.13/reviewed/glycan_citations_glytoucan.csv" }