{ "bcoid": "GLY_000262", "title": "Rat UniProtKB Xref PRO", "description": "The Rat UniprotKB Xref PRO contains rat [taxid:10116] UniProtKB canonical accessions cross-referenced ...", "filename": "rat_protein_xref_pro.csv", "filetype": "csv", "categories": { "species": "Rattus norvegicus", "molecule": "Protein", "tags": "Pro cross-references", "file_type": "csv", "status": "Reviewed", "scope": "internal" }, "minitable": { "content": [ [ "Q5RJK8-1...", "protein_xref..." ], [ "Q5RJK0-1...", "protein_xref..." ] ], "headers": [ "uniprotkb_ca...", "xref_key..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "uniprotkb_canonical_ac" }, { "type": "string", "label": "xref_key" }, { "type": "string", "label": "xref_id" }, { "type": "string", "label": "xref_label" } ], [ "Q5RJK8-1", "protein_xref_pro", "PR_Q5RJK8", "" ], [ "Q5RJK0-1", "protein_xref_pro", "PR_Q5RJK0", "" ], [ "Q5RJK3-1", "protein_xref_pro", "PR_Q5RJK3", "" ], [ "P30349-1", "protein_xref_pro", "PR_P30349", "" ], [ "Q6MG55-1", "protein_xref_pro", "PR_Q6MG55", "" ], [ "Q6MG56-1", "protein_xref_pro", "PR_Q6MG56", "" ], [ "Q5XIH0-1", "protein_xref_pro", "PR_Q5XIH0", "" ], [ "Q6MG51-1", "protein_xref_pro", "PR_Q6MG51", "" ], [ "Q6MG53-1", "protein_xref_pro", "PR_Q6MG53", "" ], [ "P20961-1", "protein_xref_pro", "PR_P20961", "" ], [ "Q6MG59-1", "protein_xref_pro", "PR_Q6MG59", "" ], [ "Q4KLP0-1", "protein_xref_pro", "PR_Q4KLP0", "" ], [ "P34997-1", "protein_xref_pro", "PR_P34997", "" ], [ "Q9WUD9-1", "protein_xref_pro", "PR_Q9WUD9", "" ], [ "Q8R553-1", "protein_xref_pro", "PR_Q8R553", "" ], [ "Q925Q4-1", "protein_xref_pro", "PR_Q925Q4", "" ], [ "Q9QX69-1", "protein_xref_pro", "PR_Q9QX69", "" ], [ "P30348-1", "protein_xref_pro", "PR_P30348", "" ], [ "Q9WUD2-1", "protein_xref_pro", "PR_Q9WUD2", "" ], [ "Q07969-1", "protein_xref_pro", "PR_Q07969", "" ], [ "Q8VHI8-1", "protein_xref_pro", "PR_Q8VHI8", "" ], [ "A0A096MJY4-1", "protein_xref_pro", "PR_A0A096MJY4", "" ], [ "O88181-1", "protein_xref_pro", "PR_O88181", "" ], [ "Q2KMM2-1", "protein_xref_pro", "PR_Q2KMM2", "" ], [ "Q2KN99-1", "protein_xref_pro", "PR_Q2KN99", "" ], [ "Q5M808-1", "protein_xref_pro", "PR_Q5M808", "" ], [ "O55043-1", "protein_xref_pro", "PR_O55043", "" ], [ "O54783-1", "protein_xref_pro", "PR_O54783", "" ], [ "P01946-1", "protein_xref_pro", "PR_P01946", "" ], [ "P56571-1", "protein_xref_pro", "PR_P56571", "" ], [ "P20646-1", "protein_xref_pro", "PR_P20646", "" ], [ "P56574-1", "protein_xref_pro", "PR_P56574", "" ], [ "Q5BK10-1", "protein_xref_pro", "PR_Q5BK10", "" ], [ "O35152-1", "protein_xref_pro", "PR_O35152", "" ], [ "P48965-1", "protein_xref_pro", "PR_P48965", "" ], [ "Q6P7Q1-1", "protein_xref_pro", "PR_Q6P7Q1", "" ], [ "P48966-1", "protein_xref_pro", "PR_P48966", "" ], [ "P48961-1", "protein_xref_pro", "PR_P48961", "" ], [ "O35158-1", "protein_xref_pro", "PR_O35158", "" ], [ "Q6P7Q4-1", "protein_xref_pro", "PR_Q6P7Q4", "" ], [ "Q6AY39-1", "protein_xref_pro", "PR_Q6AY39", "" ], [ "Q5M807-1", "protein_xref_pro", "PR_Q5M807", "" ], [ "Q9QYH1-1", "protein_xref_pro", "PR_Q9QYH1", "" ], [ "P02764-1", "protein_xref_pro", "PR_P02764", "" ], [ "P02767-1", "protein_xref_pro", "PR_P02767", "" ], [ "Q6AYD2-1", "protein_xref_pro", "PR_Q6AYD2", "" ], [ "Q6MG58-1", "protein_xref_pro", "PR_Q6MG58", "" ], [ "P43219-1", "protein_xref_pro", "PR_P43219", "" ], [ "Q561K4-1", "protein_xref_pro", "PR_Q561K4", "" ], [ "P63076-1", "protein_xref_pro", "PR_P63076", "" ], [ "Q8CF82-1", "protein_xref_pro", "PR_Q8CF82", "" ], [ "P39020-1", "protein_xref_pro", "PR_P39020", "" ], [ "Q2VWP9-1", "protein_xref_pro", "PR_Q2VWP9", "" ], [ "Q6AY34-1", "protein_xref_pro", "PR_Q6AY34", "" ], [ "P83858-1", "protein_xref_pro", "PR_P83858", "" ], [ "P62804-1", "protein_xref_pro", "PR_P62804", "" ], [ "P20814-1", "protein_xref_pro", "PR_P20814", "" ], [ "Q5I2P1-1", "protein_xref_pro", "PR_Q5I2P1", "" ], [ "Q562C9-1", "protein_xref_pro", "PR_Q562C9", "" ], [ "P24135-1", "protein_xref_pro", "PR_P24135", "" ], [ "D3ZZL9-1", "protein_xref_pro", "PR_D3ZZL9", "" ], [ "O88457-1", "protein_xref_pro", "PR_O88457", "" ], [ "O88450-1", "protein_xref_pro", "PR_O88450", "" ], [ "P61227-1", "protein_xref_pro", "PR_P61227", "" ], [ "O88453-1", "protein_xref_pro", "PR_O88453", "" ], [ "Q08290-1", "protein_xref_pro", "PR_Q08290", "" ], [ "Q9QZH2-1", "protein_xref_pro", "PR_Q9QZH2", "" ], [ "Q80W66-1", "protein_xref_pro", "PR_Q80W66", "" ], [ "Q4KLI2-1", "protein_xref_pro", "PR_Q4KLI2", "" ], [ "P01237-1", "protein_xref_pro", "PR_P01237", "" ], [ "P22199-1", "protein_xref_pro", "PR_P22199", "" ], [ "P01230-1", "protein_xref_pro", "PR_P01230", "" ], [ "B1WBV0-1", "protein_xref_pro", "PR_B1WBV0", "" ], [ "P22273-1", "protein_xref_pro", "PR_P22273", "" ], [ "Q09167-1", "protein_xref_pro", "PR_Q09167", "" ], [ "Q9R050-1", "protein_xref_pro", "PR_Q9R050", "" ], [ "P18590-1", "protein_xref_pro", "PR_P18590", "" ], [ "Q9WTV1-1", "protein_xref_pro", "PR_Q9WTV1", "" ], [ "Q9WTV0-1", "protein_xref_pro", "PR_Q9WTV0", "" ], [ "Q68FU8-1", "protein_xref_pro", "PR_Q68FU8", "" ], [ "Q9JHY8-1", "protein_xref_pro", "PR_Q9JHY8", "" ], [ "Q9JHY1-1", "protein_xref_pro", "PR_Q9JHY1", "" ], [ "Q9JHY2-1", "protein_xref_pro", "PR_Q9JHY2", "" ], [ "D4ABH7-1", "protein_xref_pro", "PR_D4ABH7", "" ] ] }, "readme": "Name\n - Rat UniProtKB Xref PRO\n\nVersion\n - 1.7.13\n\nCreated on\n - 2019-09-06T14:06:38.988943\n\nModified on\n - 2020-04-10T12:04:32.713589\n\nCreated by\n - Jeet Vora [jeetvora@gwu.edu], Rahi Navelkar [rsn13@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Xavier Holmes [xavierh@email.gwu.edu]\n\nAuthors\n - Maria Martin [martin@ebi.ac.uk], Preethi Vasudev [pvasudev@ebi.ac.uk]\n\nChecksum\n - \n\nUsability Domain\n - The Rat UniprotKB Xref PRO contains rat [taxid:10116] UniProtKB canonical accessions cross-referenced to PRO database accessions/identifiers. The dataset is derived from 2019-09 UniProtKB release. If you use this dataset please provide proper attribution to EMBL-EBI-UniProtKB and GlyGen\n - PRO provides an ontological representation of protein-related entities by explicitly defining them and showing the relationships between them.\n\nDescription Domain\n Keywords\n - protein ontology\n - PRO\n - cross-reference\n\n Pipeline Steps\n - Step-1: The script loads the UniProtKB canonical accessions that are cross-referenced to PRO database accessions/identifiers from the triplestore containing triples from nt file and extracts the data as a csv dataset\n\nExecution Domain\n Scripts - https://github.com/GW-HIVE/glygen-backend-integration/blob/master/pipeline/integrator/make-protein-dataset.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: uniprot-proteome-rattus-norvegicus.nt\n URI: https://data.glygen.org/ln2wwwdata/source/uniprot-proteome-rattus-norvegicus.nt\n Name: rat_protein_masterlist.csv\n URI: https://data.glygen.org/ln2wwwdata/reviewed/rat_protein_masterlist.csv\n Output Subdomain\n Name: rat_protein_xref_pro.csv\n URI: http://data.glygen.org/ln2wwwdata/reviewed/rat_protein_xref_pro.csv\n Name: rat_protein_xref_pro.stat.csv\n URI: http://data.glygen.org/ln2wwwdata/reviewed/rat_protein_xref_pro.stat.csv\n\nFields\n Name: \"uniprotkb_canonical_ac\"\n Description: \"\"\n Unique Values: \"8056\"\n Name: \"xref_label\"\n Description: \"Label/Name associated with x-ref\"\n Unique Values: \"1\"\n Name: \"xref_id\"\n Description: \"ID of the X-ref\"\n Unique Values: \"8056\"\n Name: \"xref_key\"\n Description: \"Source key associated to the xref_id\"\n Unique Values: \"1\"", "downloadurl": "/ln2data/releases/data/v-1.7.13/reviewed/rat_protein_xref_pro.csv" }