{ "bcoid": "GLY_000259", "title": "Rat UniProtKB Xref UniCarbKB", "description": "The Rat UniProtKB Xref UniCarbKB contains rat [taxid:10116] UniProtKB canonical accessions cross-referenced ...", "filename": "rat_protein_xref_unicarbkb.csv", "filetype": "csv", "categories": { "species": "Rattus norvegicus", "molecule": "Protein", "tags": "Unicarbkb cross-references", "file_type": "csv", "status": "Reviewed", "scope": "internal" }, "minitable": { "content": [ [ "P02764-1...", "protein_xref..." ], [ "F1MAA7-1...", "protein_xref..." ] ], "headers": [ "uniprotkb_ca...", "xref_key..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "uniprotkb_canonical_ac" }, { "type": "string", "label": "xref_key" }, { "type": "string", "label": "xref_id" }, { "type": "string", "label": "xref_label" } ], [ "P02764-1", "protein_xref_unicarbkb", "P02764", "" ], [ "F1MAA7-1", "protein_xref_unicarbkb", "F1MAA7", "" ], [ "Q62718-1", "protein_xref_unicarbkb", "Q62718", "" ], [ "Q6AYH6-1", "protein_xref_unicarbkb", "Q6AYH6", "" ], [ "O35795-1", "protein_xref_unicarbkb", "O35795", "" ], [ "P18614-1", "protein_xref_unicarbkb", "P18614", "" ], [ "P07340-1", "protein_xref_unicarbkb", "P07340", "" ], [ "P17046-1", "protein_xref_unicarbkb", "P17046", "" ], [ "Q63345-1", "protein_xref_unicarbkb", "Q63345", "" ], [ "Q99PR0-1", "protein_xref_unicarbkb", "Q99PR0", "" ], [ "Q00959-1", "protein_xref_unicarbkb", "Q00959", "" ], [ "Q00954-1", "protein_xref_unicarbkb", "Q00954", "" ], [ "O35112-1", "protein_xref_unicarbkb", "O35112", "" ], [ "B0BND0-1", "protein_xref_unicarbkb", "B0BND0", "" ], [ "Q7TP48-1", "protein_xref_unicarbkb", "Q7TP48", "" ], [ "B5DFC9-1", "protein_xref_unicarbkb", "B5DFC9", "" ], [ "P01048-1", "protein_xref_unicarbkb", "P01048", "" ], [ "Q8K3V3-1", "protein_xref_unicarbkb", "Q8K3V3", "" ], [ "P22063-1", "protein_xref_unicarbkb", "P22063", "" ], [ "P07314-1", "protein_xref_unicarbkb", "P07314", "" ], [ "D3ZUL3-1", "protein_xref_unicarbkb", "D3ZUL3", "" ], [ "D3ZES7-1", "protein_xref_unicarbkb", "D3ZES7", "" ], [ "Q03626-1", "protein_xref_unicarbkb", "Q03626", "" ], [ "Q80Z70-1", "protein_xref_unicarbkb", "Q80Z70", "" ], [ "P15127-1", "protein_xref_unicarbkb", "P15127", "" ], [ "P97603-1", "protein_xref_unicarbkb", "P97603", "" ], [ "Q6Q3F5-1", "protein_xref_unicarbkb", "Q6Q3F5", "" ], [ "P35439-1", "protein_xref_unicarbkb", "P35439", "" ], [ "P48284-1", "protein_xref_unicarbkb", "P48284", "" ], [ "P20762-1", "protein_xref_unicarbkb", "P20762", "" ], [ "Q9JK00-1", "protein_xref_unicarbkb", "Q9JK00", "" ], [ "O70352-1", "protein_xref_unicarbkb", "O70352", "" ], [ "Q63617-1", "protein_xref_unicarbkb", "Q63617", "" ], [ "P47820-1", "protein_xref_unicarbkb", "P47820", "" ], [ "Q02563-1", "protein_xref_unicarbkb", "Q02563", "" ], [ "Q9JJW1-1", "protein_xref_unicarbkb", "Q9JJW1", "" ], [ "P20236-1", "protein_xref_unicarbkb", "P20236", "" ], [ "O54861-1", "protein_xref_unicarbkb", "O54861", "" ], [ "D4A2I9-1", "protein_xref_unicarbkb", "D4A2I9", "" ], [ "Q9ESR9-1", "protein_xref_unicarbkb", "Q9ESR9", "" ], [ "P14841-1", "protein_xref_unicarbkb", "P14841", "" ], [ "P97846-1", "protein_xref_unicarbkb", "P97846", "" ], [ "Q6P7A9-1", "protein_xref_unicarbkb", "Q6P7A9", "" ], [ "P97686-1", "protein_xref_unicarbkb", "P97686", "" ], [ "P24268-1", "protein_xref_unicarbkb", "P24268", "" ], [ "Q63751-1", "protein_xref_unicarbkb", "Q63751", "" ], [ "F1MAH6-1", "protein_xref_unicarbkb", "F1MAH6", "" ], [ "Q5PQV5-1", "protein_xref_unicarbkb", "Q5PQV5", "" ], [ "Q8CGU6-1", "protein_xref_unicarbkb", "Q8CGU6", "" ], [ "Q6AY20-1", "protein_xref_unicarbkb", "Q6AY20", "" ], [ "B2GV54-1", "protein_xref_unicarbkb", "B2GV54", "" ], [ "P97829-1", "protein_xref_unicarbkb", "P97829", "" ], [ "Q99MZ4-1", "protein_xref_unicarbkb", "Q99MZ4", "" ], [ "P15800-1", "protein_xref_unicarbkb", "P15800", "" ], [ "P32736-1", "protein_xref_unicarbkb", "P32736", "" ], [ "P15087-1", "protein_xref_unicarbkb", "P15087", "" ], [ "P31596-1", "protein_xref_unicarbkb", "P31596", "" ], [ "Q64244-1", "protein_xref_unicarbkb", "Q64244", "" ], [ "Q9Z0J8-1", "protein_xref_unicarbkb", "Q9Z0J8", "" ], [ "P47971-1", "protein_xref_unicarbkb", "P47971", "" ], [ "P17955-1", "protein_xref_unicarbkb", "P17955", "" ], [ "P28841-1", "protein_xref_unicarbkb", "P28841", "" ], [ "P19493-1", "protein_xref_unicarbkb", "P19493", "" ], [ "P19492-1", "protein_xref_unicarbkb", "P19492", "" ], [ "P24623-1", "protein_xref_unicarbkb", "P24623", "" ], [ "Q63198-1", "protein_xref_unicarbkb", "Q63198", "" ], [ "D3ZWD0-1", "protein_xref_unicarbkb", "D3ZWD0", "" ], [ "Q05695-1", "protein_xref_unicarbkb", "Q05695", "" ], [ "Q00960-1", "protein_xref_unicarbkb", "Q00960", "" ], [ "P01830-1", "protein_xref_unicarbkb", "P01830", "" ], [ "O35162-1", "protein_xref_unicarbkb", "O35162", "" ], [ "Q7M730-1", "protein_xref_unicarbkb", "Q7M730", "" ], [ "Q63604-1", "protein_xref_unicarbkb", "Q63604", "" ], [ "O35764-1", "protein_xref_unicarbkb", "O35764", "" ], [ "Q9JHW1-1", "protein_xref_unicarbkb", "Q9JHW1", "" ], [ "Q9R1K2-1", "protein_xref_unicarbkb", "Q9R1K2", "" ], [ "Q9Z1Y3-1", "protein_xref_unicarbkb", "Q9Z1Y3", "" ], [ "P13638-1", "protein_xref_unicarbkb", "P13638", "" ], [ "P70627-1", "protein_xref_unicarbkb", "P70627", "" ], [ "Q9QZA6-1", "protein_xref_unicarbkb", "Q9QZA6", "" ], [ "D3ZE55-1", "protein_xref_unicarbkb", "D3ZE55", "" ], [ "P08932-1", "protein_xref_unicarbkb", "P08932", "" ], [ "Q5NDF0-1", "protein_xref_unicarbkb", "Q5NDF0", "" ], [ "P05540-1", "protein_xref_unicarbkb", "P05540", "" ] ] }, "readme": "Name\n - Rat UniProtKB Xref UniCarbKB\n\nVersion\n - 1.7.13\n\nCreated on\n - 2019-09-06T14:06:38.986196\n\nModified on\n - 2020-04-10T12:03:03.470087\n\nCreated by\n - Jeet Vora [jeetvora@gwu.edu], Rahi Navelkar [rsn13@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Xavier Holmes [xavierh@email.gwu.edu]\n\nAuthors\n - Maria Martin [martin@ebi.ac.uk], Preethi Vasudev [pvasudev@ebi.ac.uk]\n\nChecksum\n - \n\nUsability Domain\n - The Rat UniProtKB Xref UniCarbKB contains rat [taxid:10116] UniProtKB canonical accessions cross-referenced to UniCarbKB database accessions/identifiers. The dataset is derived from 2019-09 UniProtKB release. If you use this dataset please provide proper attribution to EMBL-EBI-UniProtKB and GlyGen\n - UniCarbKB is an initiative that aims to promote the creation of an online information storage and search platform for glycomics and glycobiology research.\n\nDescription Domain\n Keywords\n - glycoprotein\n - glycan\n - UniCarbKB\n - cross-reference\n\n Pipeline Steps\n - Step-1: The script loads the UniProtKB canonical accessions that are cross-referenced to UniCarbKB database accessions/identifiers from the triplestore containing triples from nt file and extracts the data as a csv dataset\n\nExecution Domain\n Scripts - https://github.com/GW-HIVE/glygen-backend-integration/blob/master/pipeline/integrator/make-protein-dataset.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: uniprot-proteome-rattus-norvegicus.nt\n URI: https://data.glygen.org/ln2wwwdata/source/uniprot-proteome-rattus-norvegicus.nt\n Name: rat_protein_masterlist.csv\n URI: https://data.glygen.org/ln2wwwdata/reviewed/rat_protein_masterlist.csv\n Output Subdomain\n Name: rat_protein_xref_unicarbkb.csv\n URI: http://data.glygen.org/ln2wwwdata/reviewed/rat_protein_xref_unicarbkb.csv\n Name: rat_protein_xref_unicarbkb.stat.csv\n URI: http://data.glygen.org/ln2wwwdata/reviewed/rat_protein_xref_unicarbkb.stat.csv\n\nFields\n Name: \"uniprotkb_canonical_ac\"\n Description: \"\"\n Unique Values: \"146\"\n Name: \"xref_label\"\n Description: \"Label/Name associated with x-ref\"\n Unique Values: \"1\"\n Name: \"xref_id\"\n Description: \"ID of the X-ref\"\n Unique Values: \"146\"\n Name: \"xref_key\"\n Description: \"Source key associated to the xref_id\"\n Unique Values: \"1\"", "downloadurl": "/ln2data/releases/data/v-1.7.13/reviewed/rat_protein_xref_unicarbkb.csv" }