{ "bcoid": "GLY_000224", "title": "Rat Glycosylation Sites (UniProtKB)", "description": "The Rat Glycosylation Sites (UniProtKB) dataset contains mouse [taxid:10116] UniProtKB canonical accessions ...", "filename": "rat_proteoform_glycosylation_sites_uniprotkb.csv", "filetype": "csv", "categories": { "species": "Rattus norvegicus", "molecule": "Protein", "tags": "Glycosylation Sites", "file_type": "csv", "status": "Reviewed", "scope": "internal" }, "minitable": { "content": [ [ "Q64716-1...", "492..." ], [ "P17438-1...", "229..." ] ], "headers": [ "uniprotkb_ca...", "glycosylatio..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "uniprotkb_canonical_ac" }, { "type": "string", "label": "glycosylation_site_uniprotkb" }, { "type": "string", "label": "amino_acid" }, { "type": "string", "label": "saccharide" }, { "type": "string", "label": "glycosylation_type" }, { "type": "string", "label": "xref_key" }, { "type": "string", "label": "xref_id" }, { "type": "string", "label": "src_xref_key" }, { "type": "string", "label": "src_xref_id" }, { "type": "string", "label": "uniprotkb_glycosylation_annotation_comment" }, { "type": "string", "label": "data_source" }, { "type": "string", "label": "eco_id" }, { "type": "string", "label": "uniprotkb_ftid" }, { "type": "string", "label": "carb_name" }, { "type": "string", "label": "glycosylation_subtype" } ], [ "Q64716-1", "492", "Asn", "", "n-linked", "protein_xref_uniprotkb_gly", "Q64716", "protein_xref_uniprotkb_gly", "Q64716", "N-linked (GlcNAc...) asparagine", "", "", "", "GlcNAc...", "" ], [ "P17438-1", "229", "Asn", "", "n-linked", "protein_xref_uniprotkb_gly", "P17438", "protein_xref_uniprotkb_gly", "P17438", "N-linked (GlcNAc...) asparagine", "", "", "", "GlcNAc...", "" ], [ "Q9QZT0-1", "419", "Asn", "", "n-linked", "protein_xref_uniprotkb_gly", "Q9QZT0", "protein_xref_uniprotkb_gly", "Q9QZT0", "N-linked (GlcNAc...) asparagine", "", "", "", "GlcNAc...", "" ], [ "Q99376-1", "179", "Asn", "", "n-linked", "protein_xref_uniprotkb_gly", "Q99376", "protein_xref_uniprotkb_gly", "Q99376", "N-linked (GlcNAc...) asparagine", "UniProtKB", "ECO_0000250", "", "GlcNAc...", "" ], [ "P70505-1", "410", "Asn", "", "n-linked", "protein_xref_uniprotkb_gly", "P70505", "protein_xref_uniprotkb_gly", "P70505", "N-linked (GlcNAc...) asparagine", "", "", "", "GlcNAc...", "" ], [ "P33579-1", "210", "Asn", "", "n-linked", "protein_xref_uniprotkb_gly", "P33579", "protein_xref_uniprotkb_gly", "P33579", "N-linked (GlcNAc...) asparagine", "", "", "", "GlcNAc...", "" ], [ "P21588-1", "349", "Asn", "", "n-linked", "protein_xref_uniprotkb_gly", "P21588", "protein_xref_uniprotkb_gly", "P21588", "N-linked (GlcNAc...) asparagine", "", "", "", "GlcNAc...", "" ], [ "Q5EGZ1-1", "601", "Asn", "", "n-linked", "protein_xref_uniprotkb_gly", "Q5EGZ1", "protein_xref_uniprotkb_gly", "Q5EGZ1", "N-linked (GlcNAc...) asparagine", "", "", "", "GlcNAc...", "" ], [ "Q9JLM2-1", "144", "Asn", "", "n-linked", "protein_xref_uniprotkb_gly", "Q9JLM2", "protein_xref_uniprotkb_gly", "Q9JLM2", "N-linked (GlcNAc...) asparagine", "", "", "", "GlcNAc...", "" ], [ "O88277-1", "3278", "Asn", "", "n-linked", "protein_xref_uniprotkb_gly", "O88277", "protein_xref_uniprotkb_gly", "O88277", "N-linked (GlcNAc...) asparagine", "", "", "", "GlcNAc...", "" ], [ "Q5KTC7-1", "42", "Asn", "", "n-linked", "protein_xref_uniprotkb_gly", "Q5KTC7", "protein_xref_uniprotkb_gly", "Q5KTC7", "N-linked (GlcNAc...) asparagine", "", "", "", "GlcNAc...", "" ], [ "Q5U309-1", "337", "Asn", "", "n-linked", "protein_xref_uniprotkb_gly", "Q5U309", "protein_xref_uniprotkb_gly", "Q5U309", "N-linked (GlcNAc...) asparagine", "", "", "", "GlcNAc...", "" ], [ "P55146-1", "283", "Asn", "", "n-linked", "protein_xref_uniprotkb_gly", "P55146", "protein_xref_uniprotkb_gly", "P55146", "N-linked (GlcNAc...) asparagine", "", "", "", "GlcNAc...", "" ], [ "Q568Z4-1", "141", "Asn", "", "n-linked", "protein_xref_uniprotkb_gly", "Q568Z4", "protein_xref_uniprotkb_gly", "Q568Z4", "N-linked (GlcNAc...) asparagine", "", "", "", "GlcNAc...", "" ], [ "P97553-1", "26", "Asn", "", "n-linked", "protein_xref_uniprotkb_gly", "P97553", "protein_xref_uniprotkb_gly", "P97553", "N-linked (GlcNAc...) asparagine", "", "", "", "GlcNAc...", "" ], [ "Q3HS83-1", "120", "Thr", "", "o-linked", "protein_xref_uniprotkb_gly", "Q3HS83", "protein_xref_uniprotkb_gly", "Q3HS83", "O-linked (GalNAc...) threonine", "", "", "", "GalNAc...", "O-GalNAcylation" ], [ "P14046-1", "750", "Asn", "", "n-linked", "protein_xref_uniprotkb_gly", "P14046", "protein_xref_uniprotkb_gly", "P14046", "N-linked (GlcNAc...) asparagine", "", "", "", "GlcNAc...", "" ], [ "O35757-1", "236", "Asn", "", "n-linked", "protein_xref_uniprotkb_gly", "O35757", "protein_xref_uniprotkb_gly", "O35757", "N-linked (GlcNAc...) asparagine", "", "", "", "GlcNAc...", "" ], [ "Q7TSY4-1", "431", "Asn", "", "n-linked", "protein_xref_uniprotkb_gly", "Q7TSY4", "protein_xref_uniprotkb_gly", "Q7TSY4", "N-linked (GlcNAc...) asparagine", "", "", "", "GlcNAc...", "" ], [ "Q7TMA5-1", "2094", "Asn", "", "n-linked", "protein_xref_uniprotkb_gly", "Q7TMA5", "protein_xref_uniprotkb_gly", "Q7TMA5", "N-linked (GlcNAc...) asparagine", "", "", "", "GlcNAc...", "" ], [ "Q9WUD2-1", "571", "Asn", "", "n-linked", "protein_xref_uniprotkb_gly", "Q9WUD2", "protein_xref_uniprotkb_gly", "Q9WUD2", "N-linked (GlcNAc...) asparagine", "", "", "", "GlcNAc...", "" ], [ "P23944-1", "60", "Asn", "", "n-linked", "protein_xref_uniprotkb_gly", "P23944", "protein_xref_uniprotkb_gly", "P23944", "N-linked (GlcNAc...) asparagine", "", "", "", "GlcNAc...", "" ], [ "Q62904-1", "229", "Asn", "", "n-linked", "protein_xref_uniprotkb_gly", "Q62904", "protein_xref_uniprotkb_gly", "Q62904", "N-linked (GlcNAc...) asparagine", "", "", "", "GlcNAc...", "" ], [ "Q03626-1", "1004", "Asn", "", "n-linked", "protein_xref_uniprotkb_gly", "Q03626", "protein_xref_uniprotkb_gly", "Q03626", "N-linked (GlcNAc...) asparagine", "", "", "", "GlcNAc...", "" ], [ "O54861-1", "682", "Asn", "", "n-linked", "protein_xref_uniprotkb_gly", "O54861", "protein_xref_uniprotkb_gly", "O54861", "N-linked (GlcNAc...) asparagine", "", "", "", "GlcNAc...", "" ], [ "Q63661-1", "392", "Thr", "", "o-linked", "protein_xref_uniprotkb_gly", "Q63661", "protein_xref_uniprotkb_gly", "Q63661", "O-linked (GalNAc...) threonine", "", "", "", "GalNAc...", "O-GalNAcylation" ], [ "P07725-1", "152", "Thr", "", "o-linked", "protein_xref_uniprotkb_gly", "P07725", "protein_xref_uniprotkb_gly", "P07725", "O-linked (GalNAc...) threonine", "PubMed", "ECO_0000269", "", "GalNAc...", "O-GalNAcylation" ], [ "P07725-1", "152", "Thr", "", "o-linked", "protein_xref_pubmed", "1908233", "protein_xref_uniprotkb_gly", "P07725", "O-linked (GalNAc...) threonine", "PubMed", "ECO_0000269", "", "GalNAc...", "O-GalNAcylation" ], [ "P25108-1", "161", "Asn", "", "n-linked", "protein_xref_uniprotkb_gly", "P25108", "protein_xref_uniprotkb_gly", "P25108", "N-linked (GlcNAc...) asparagine", "", "", "", "GlcNAc...", "" ], [ "P13432-1", "136", "Asn", "", "n-linked", "protein_xref_uniprotkb_gly", "P13432", "protein_xref_uniprotkb_gly", "P13432", "N-linked (GlcNAc...) asparagine", "", "", "", "GlcNAc...", "" ], [ "Q765A7-1", "558", "Asn", "", "n-linked", "protein_xref_uniprotkb_gly", "Q765A7", "protein_xref_uniprotkb_gly", "Q765A7", "N-linked (GlcNAc...) asparagine", "PubMed", "ECO_0000244", "", "GlcNAc...", "" ], [ "Q765A7-1", "558", "Asn", "", "n-linked", "protein_xref_pubmed", "24090084", "protein_xref_uniprotkb_gly", "Q765A7", "N-linked (GlcNAc...) asparagine", "PubMed", "ECO_0000244", "", "GlcNAc...", "" ], [ "Q7TSY4-1", "426", "Asn", "", "n-linked", "protein_xref_uniprotkb_gly", "Q7TSY4", "protein_xref_uniprotkb_gly", "Q7TSY4", "N-linked (GlcNAc...) asparagine", "", "", "", "GlcNAc...", "" ], [ "P0DSP1-1", "2070", "Asn", "", "n-linked", "protein_xref_uniprotkb_gly", "P0DSP1", "protein_xref_uniprotkb_gly", "P0DSP1", "N-linked (GlcNAc...) asparagine", "", "", "", "GlcNAc...", "" ], [ "P30191-1", "128", "Asn", "", "n-linked", "protein_xref_uniprotkb_gly", "P30191", "protein_xref_uniprotkb_gly", "P30191", "N-linked (GlcNAc...) asparagine", "", "", "", "GlcNAc...", "" ], [ "Q7TPF1-1", "7", "Thr", "", "o-linked", "protein_xref_uniprotkb_gly", "Q7TPF1", "protein_xref_uniprotkb_gly", "Q7TPF1", "O-linked (GalNAc...) threonine", "", "", "", "GalNAc...", "O-GalNAcylation" ], [ "B0BNK7-1", "348", "Asn", "", "n-linked", "protein_xref_uniprotkb_gly", "B0BNK7", "protein_xref_uniprotkb_gly", "B0BNK7", "N-linked (GlcNAc...) asparagine", "", "", "", "GlcNAc...", "" ], [ "Q5U1V9-1", "134", "Asn", "", "n-linked", "protein_xref_uniprotkb_gly", "Q5U1V9", "protein_xref_uniprotkb_gly", "Q5U1V9", "N-linked (GlcNAc...) asparagine", "", "", "", "GlcNAc...", "" ], [ "P30836-1", "60", "Asn", "", "n-linked", "protein_xref_uniprotkb_gly", "P30836", "protein_xref_uniprotkb_gly", "P30836", "N-linked (GlcNAc...) asparagine", "", "", "", "GlcNAc...", "" ], [ "P97675-1", "594", "Asn", "", "n-linked", "protein_xref_uniprotkb_gly", "P97675", "protein_xref_uniprotkb_gly", "P97675", "N-linked (GlcNAc...) asparagine", "", "", "", "GlcNAc...", "" ], [ "G3V9H8-1", "395", "Asn", "", "n-linked", "protein_xref_uniprotkb_gly", "G3V9H8", "protein_xref_uniprotkb_gly", "G3V9H8", "N-linked (GlcNAc...) asparagine", "", "", "", "GlcNAc...", "" ], [ "Q67ER8-1", "162", "Asn", "", "n-linked", "protein_xref_uniprotkb_gly", "Q67ER8", "protein_xref_uniprotkb_gly", "Q67ER8", "N-linked (GlcNAc...) asparagine", "", "", "", "GlcNAc...", "" ], [ "P98158-1", "1811", "Asn", "", "n-linked", "protein_xref_uniprotkb_gly", "P98158", "protein_xref_uniprotkb_gly", "P98158", "N-linked (GlcNAc...) asparagine", "", "", "", "GlcNAc...", "" ], [ "Q9QYP1-1", "498", "Asn", "", "n-linked", "protein_xref_uniprotkb_gly", "Q9QYP1", "protein_xref_uniprotkb_gly", "Q9QYP1", "N-linked (GlcNAc...) asparagine", "", "", "", "GlcNAc...", "" ], [ "P07314-1", "427", "Asn", "", "n-linked", "protein_xref_uniprotkb_gly", "P07314", "protein_xref_uniprotkb_gly", "P07314", "N-linked (GlcNAc...) asparagine", "", "", "", "GlcNAc...", "" ], [ "P58365-1", "2166", "Asn", "", "n-linked", "protein_xref_uniprotkb_gly", "P58365", "protein_xref_uniprotkb_gly", "P58365", "N-linked (GlcNAc...) asparagine", "", "", "", "GlcNAc...", "" ], [ "Q9R1K2-1", "1773", "Asn", "", "n-linked", "protein_xref_uniprotkb_gly", "Q9R1K2", "protein_xref_uniprotkb_gly", "Q9R1K2", "N-linked (GlcNAc...) asparagine", "", "", "", "GlcNAc...", "" ], [ "P0CC10-1", "427", "Asn", "", "n-linked", "protein_xref_uniprotkb_gly", "P0CC10", "protein_xref_uniprotkb_gly", "P0CC10", "N-linked (GlcNAc...) asparagine", "", "", "", "GlcNAc...", "" ], [ "Q99P67-1", "53", "Asn", "", "n-linked", "protein_xref_uniprotkb_gly", "Q99P67", "protein_xref_uniprotkb_gly", "Q99P67", "N-linked (GlcNAc...) asparagine", "", "", "", "GlcNAc...", "" ], [ "O70244-1", "1332", "Asn", "", "n-linked", "protein_xref_uniprotkb_gly", "O70244", "protein_xref_uniprotkb_gly", "O70244", "N-linked (GlcNAc...) asparagine", "", "", "", "GlcNAc...", "" ], [ "Q6AY41-1", "261", "Asn", "", "n-linked", "protein_xref_uniprotkb_gly", "Q6AY41", "protein_xref_uniprotkb_gly", "Q6AY41", "N-linked (GlcNAc...) asparagine", "PubMed", "ECO_0000244", "", "GlcNAc...", "" ], [ "Q6AY41-1", "261", "Asn", "", "n-linked", "protein_xref_pubmed", "24090084", "protein_xref_uniprotkb_gly", "Q6AY41", "N-linked (GlcNAc...) asparagine", "PubMed", "ECO_0000244", "", "GlcNAc...", "" ], [ "Q700K0-1", "3584", "Asn", "", "n-linked", "protein_xref_uniprotkb_gly", "Q700K0", "protein_xref_uniprotkb_gly", "Q700K0", "N-linked (GlcNAc...) asparagine", "", "", "", "GlcNAc...", "" ], [ "P14650-1", "123", "Asn", "", "n-linked", "protein_xref_uniprotkb_gly", "P14650", "protein_xref_uniprotkb_gly", "P14650", "N-linked (GlcNAc...) asparagine", "", "", "", "GlcNAc...", "" ], [ "P28565-1", "5", "Asn", "", "n-linked", "protein_xref_uniprotkb_gly", "P28565", "protein_xref_uniprotkb_gly", "P28565", "N-linked (GlcNAc...) asparagine", "", "", "", "GlcNAc...", "" ], [ "Q62894-1", "466", "Asn", "", "n-linked", "protein_xref_uniprotkb_gly", "Q62894", "protein_xref_uniprotkb_gly", "Q62894", "N-linked (GlcNAc...) asparagine", "", "", "", "GlcNAc...", "" ], [ "Q07008-1", "1179", "Asn", "", "n-linked", "protein_xref_uniprotkb_gly", "Q07008", "protein_xref_uniprotkb_gly", "Q07008", "N-linked (GlcNAc...) asparagine", "", "", "", "GlcNAc...", "" ], [ "Q63563-1", "330", "Asn", "", "n-linked", "protein_xref_uniprotkb_gly", "Q63563", "protein_xref_uniprotkb_gly", "Q63563", "N-linked (GlcNAc...) asparagine", "", "", "", "GlcNAc...", "" ], [ "P06238-1", "989", "Asn", "", "n-linked", "protein_xref_uniprotkb_gly", "P06238", "protein_xref_uniprotkb_gly", "P06238", "N-linked (GlcNAc...) asparagine", "", "", "", "GlcNAc...", "" ], [ "P97629-1", "989", "Asn", "", "n-linked", "protein_xref_uniprotkb_gly", "P97629", "protein_xref_uniprotkb_gly", "P97629", "N-linked (GlcNAc...) asparagine", "", "", "", "GlcNAc...", "" ], [ "P0C5H6-1", "188", "Asn", "", "n-linked", "protein_xref_uniprotkb_gly", "P0C5H6", "protein_xref_uniprotkb_gly", "P0C5H6", "N-linked (GlcNAc...) asparagine", "", "", "", "GlcNAc...", "" ], [ "P08721-1", "132", "Thr", "", "o-linked", "protein_xref_uniprotkb_gly", "P08721", "protein_xref_uniprotkb_gly", "P08721", "O-linked (GalNAc...) threonine", "", "", "", "GalNAc...", "O-GalNAcylation" ], [ "O35932-1", "2", "Asn", "", "n-linked", "protein_xref_uniprotkb_gly", "O35932", "protein_xref_uniprotkb_gly", "O35932", "N-linked (GlcNAc...) asparagine", "", "", "", "GlcNAc...", "" ], [ "Q63604-1", "411", "Asn", "", "n-linked", "protein_xref_uniprotkb_gly", "Q63604", "protein_xref_uniprotkb_gly", "Q63604", "N-linked (GlcNAc...) asparagine", "", "", "", "GlcNAc...", "" ], [ "Q07969-1", "417", "Asn", "", "n-linked", "protein_xref_uniprotkb_gly", "Q07969", "protein_xref_uniprotkb_gly", "Q07969", "N-linked (GlcNAc...) asparagine", "", "", "", "GlcNAc...", "" ], [ "P52500-1", "5", "Asn", "", "n-linked", "protein_xref_uniprotkb_gly", "P52500", "protein_xref_uniprotkb_gly", "P52500", "N-linked (GlcNAc...) asparagine", "", "", "", "GlcNAc...", "" ], [ "Q63132-1", "52", "Asn", "", "n-linked", "protein_xref_uniprotkb_gly", "Q63132", "protein_xref_uniprotkb_gly", "Q63132", "N-linked (GlcNAc...) asparagine", "", "", "", "GlcNAc...", "" ], [ "P36953-1", "109", "Asn", "", "n-linked", "protein_xref_uniprotkb_gly", "P36953", "protein_xref_uniprotkb_gly", "P36953", "N-linked (GlcNAc...) asparagine", "", "", "", "GlcNAc...", "" ], [ "P98105-1", "192", "Asn", "", "n-linked", "protein_xref_uniprotkb_gly", "P98105", "protein_xref_uniprotkb_gly", "P98105", "N-linked (GlcNAc...) asparagine", "", "", "", "GlcNAc...", "" ], [ "Q68G12-1", "58", "Asn", "", "n-linked", "protein_xref_uniprotkb_gly", "Q68G12", "protein_xref_uniprotkb_gly", "Q68G12", "N-linked (GlcNAc...) asparagine", "", "", "", "GlcNAc...", "" ], [ "P55280-1", "536", "Asn", "", "n-linked", "protein_xref_uniprotkb_gly", "P55280", "protein_xref_uniprotkb_gly", "P55280", "N-linked (GlcNAc...) asparagine", "", "", "", "GlcNAc...", "" ], [ "Q63155-1", "628", "Asn", "", "n-linked", "protein_xref_uniprotkb_gly", "Q63155", "protein_xref_uniprotkb_gly", "Q63155", "N-linked (GlcNAc...) asparagine", "", "", "", "GlcNAc...", "" ], [ "D3ZLR9-1", "86", "Asn", "", "n-linked", "protein_xref_uniprotkb_gly", "D3ZLR9", "protein_xref_uniprotkb_gly", "D3ZLR9", "N-linked (GlcNAc...) asparagine", "pirsr", "ECO_0000256", "", "GlcNAc...", "" ], [ "D3ZLR9-1", "86", "Asn", "", "n-linked", "protein_xref_pirsr", "PIRSR038061-1", "protein_xref_uniprotkb_gly", "D3ZLR9", "N-linked (GlcNAc...) asparagine", "pirsr", "ECO_0000256", "", "GlcNAc...", "" ], [ "P04634-1", "33", "Asn", "", "n-linked", "protein_xref_uniprotkb_gly", "P04634", "protein_xref_uniprotkb_gly", "P04634", "N-linked (GlcNAc...) asparagine", "", "", "", "GlcNAc...", "" ], [ "Q03351-1", "203", "Asn", "", "n-linked", "protein_xref_uniprotkb_gly", "Q03351", "protein_xref_uniprotkb_gly", "Q03351", "N-linked (GlcNAc...) asparagine", "", "", "", "GlcNAc...", "" ], [ "P52500-1", "24", "Asn", "", "n-linked", "protein_xref_uniprotkb_gly", "P52500", "protein_xref_uniprotkb_gly", "P52500", "N-linked (GlcNAc...) asparagine", "", "", "", "GlcNAc...", "" ], [ "Q62840-1", "117", "Ser", "", "o-linked", "protein_xref_uniprotkb_gly", "Q62840", "protein_xref_uniprotkb_gly", "Q62840", "O-linked (GalNAc...) serine", "", "", "", "GalNAc...", "O-GalNAcylation" ], [ "P98106-1", "212", "Asn", "", "n-linked", "protein_xref_uniprotkb_gly", "P98106", "protein_xref_uniprotkb_gly", "P98106", "N-linked (GlcNAc...) asparagine", "", "", "", "GlcNAc...", "" ], [ "P97639-1", "23", "Asn", "", "n-linked", "protein_xref_uniprotkb_gly", "P97639", "protein_xref_uniprotkb_gly", "P97639", "N-linked (GlcNAc...) asparagine", "", "", "", "GlcNAc...", "" ], [ "P98158-1", "4329", "Asn", "", "n-linked", "protein_xref_uniprotkb_gly", "P98158", "protein_xref_uniprotkb_gly", "P98158", "N-linked (GlcNAc...) asparagine", "", "", "", "GlcNAc...", "" ], [ "Q6P767-1", "42", "Asn", "", "n-linked", "protein_xref_uniprotkb_gly", "Q6P767", "protein_xref_uniprotkb_gly", "Q6P767", "N-linked (GlcNAc...) asparagine", "", "", "", "GlcNAc...", "" ], [ "Q62919-1", "372", "Asn", "", "n-linked", "protein_xref_uniprotkb_gly", "Q62919", "protein_xref_uniprotkb_gly", "Q62919", "N-linked (GlcNAc...) asparagine", "", "", "", "GlcNAc...", "" ], [ "P55108-1", "467", "Asn", "", "n-linked", "protein_xref_uniprotkb_gly", "P55108", "protein_xref_uniprotkb_gly", "P55108", "N-linked (GlcNAc...) asparagine", "", "", "", "GlcNAc...", "" ] ] }, "readme": "Name\n - Rat Glycosylation Sites (UniProtKB)\n\nVersion\n - 1.7.13\n\nCreated on\n - 2019-09-06T14:06:38.952590\n\nModified on\n - 2020-04-10T11:52:23.712035\n\nCreated by\n - Jeet Vora [jeetvora@gwu.edu], Rahi Navelkar [rsn13@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Xavier Holmes [xavierh@email.gwu.edu]\n\nAuthors\n - Maria Martin [martin@ebi.ac.uk], Preethi Vasudev [pvasudev@ebi.ac.uk]\n\nChecksum\n - \n\nUsability Domain\n - The Rat Glycosylation Sites (UniProtKB) dataset contains mouse [taxid:10116] UniProtKB canonical accessions with information on reported and predicted glycosylation sites in UniProtKB database. The dataset is derived from 2019-09 UniProtKB release. If you use this dataset please provide proper attribution to EMBL-EBI-UniProtKB and GlyGen\n\nDescription Domain\n\n Pipeline Steps\n - Step-1: The script loads the glycosylation information from the triplestore conatining triples from the nt file and extracts as a csv dataset\n\nExecution Domain\n Scripts - https://github.com/GW-HIVE/glygen-backend-integration/blob/master/pipeline/integrator/make-proteoform-dataset.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: uniprot-proteome-rattus-norvegicus.nt\n URI: https://data.glygen.org/ln2wwwdata/source/uniprot-proteome-rattus-norvegicus.nt\n Name: rat_protein_masterlist.csv\n URI: https://data.glygen.org/ln2wwwdata/reviewed/rat_protein_masterlist.csv\n Output Subdomain\n Name: rat_proteoform_glycosylation_sites_uniprotkb.csv\n URI: http://data.glygen.org/ln2wwwdata/reviewed/rat_proteoform_glycosylation_sites_uniprotkb.csv\n Name: rat_proteoform_glycosylation_sites_uniprotkb.stat.csv\n URI: http://data.glygen.org/ln2wwwdata/reviewed/rat_proteoform_glycosylation_sites_uniprotkb.stat.csv\n\nFields\n Name: \"uniprotkb_canonical_ac\"\n Description: \"\"\n Unique Values: \"2085\"\n Name: \"data_source\"\n Description: \"The source database for the data\"\n Unique Values: \"7\"\n Name: \"glycosylation_site_uniprotkb\"\n Description: \"Site on the protein sequence of the UniProtKB entry where glycosylation is observed\"\n Unique Values: \"1458\"\n Name: \"glycosylation_subtype\"\n Description: \"\"\n Unique Values: \"12\"\n Name: \"xref_id\"\n Description: \"ID of the X-ref\"\n Unique Values: \"2202\"\n Name: \"glycosylation_type\"\n Description: \"Type of glycosylation (N/O/C/S linked glycosylation)\"\n Unique Values: \"3\"\n Name: \"amino_acid\"\n Description: \"Three letter abbreviation code of the amino acid\"\n Unique Values: \"6\"\n Name: \"src_xref_key\"\n Description: \"Source Xref key\"\n Unique Values: \"1\"\n Name: \"src_xref_id\"\n Description: \"Source X-ref ID\"\n Unique Values: \"2090\"\n Name: \"saccharide\"\n Description: \"Sugar\"\n Unique Values: \"1\"\n Name: \"uniprotkb_glycosylation_annotation_comment\"\n Description: \"The glycosylation annotation in UniProtKB that provides more context and description about the glycosylation event on a proein\"\n Unique Values: \"47\"\n Name: \"carb_name\"\n Description: \"carbohydrate name\"\n Unique Values: \"13\"\n Name: \"eco_id\"\n Description: \"Evidence & Conclusion Ontology (ECO) identifier\"\n Unique Values: \"9\"\n Name: \"uniprotkb_ftid\"\n Description: \"A stable feature identifier that allows to construct links directly from position-specific annotation to specialized protein-related databases. (In the dataset the FTID is for glycosylation for residues attached to an oligosaccharide structure annotated in the UniCarbKB database)\"\n Unique Values: \"7\"\n Name: \"xref_key\"\n Description: \"Source key associated to the xref_id\"\n Unique Values: \"6\"", "downloadurl": "/ln2data/releases/data/v-1.7.13/reviewed/rat_proteoform_glycosylation_sites_uniprotkb.csv" }