{ "bcoid": "GLY_000129", "title": "Human UniProtKB Xref UniCarbKB", "description": "The Human UniProtKB Xref UniCarbKB contains human [taxid:9606] UniProtKB canonical accessions cross-referenced ...", "filename": "human_protein_xref_unicarbkb.csv", "filetype": "csv", "categories": { "species": "Homo sapiens", "molecule": "Protein", "tags": "Unicarbkb cross-references", "file_type": "csv", "status": "Reviewed", "scope": "internal" }, "minitable": { "content": [ [ "P02768-1...", "protein_xref..." ], [ "P02760-1...", "protein_xref..." ] ], "headers": [ "uniprotkb_ca...", "xref_key..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "uniprotkb_canonical_ac" }, { "type": "string", "label": "xref_key" }, { "type": "string", "label": "xref_id" }, { "type": "string", "label": "xref_label" } ], [ "P02768-1", "protein_xref_unicarbkb", "P02768", "" ], [ "P02760-1", "protein_xref_unicarbkb", "P02760", "" ], [ "P02763-1", "protein_xref_unicarbkb", "P02763", "" ], [ "P02765-1", "protein_xref_unicarbkb", "P02765", "" ], [ "P07204-1", "protein_xref_unicarbkb", "P07204", "" ], [ "P01009-1", "protein_xref_unicarbkb", "P01009", "" ], [ "P01008-1", "protein_xref_unicarbkb", "P01008", "" ], [ "Q99075-1", "protein_xref_unicarbkb", "Q99075", "" ], [ "P01824-1", "protein_xref_unicarbkb", "P01824", "" ], [ "P08861-1", "protein_xref_unicarbkb", "P08861", "" ], [ "P10451-1", "protein_xref_unicarbkb", "P10451", "" ], [ "P29460-1", "protein_xref_unicarbkb", "P29460", "" ], [ "P02743-1", "protein_xref_unicarbkb", "P02743", "" ], [ "P01215-1", "protein_xref_unicarbkb", "P01215", "" ], [ "P56817-1", "protein_xref_unicarbkb", "P56817", "" ], [ "Q14242-1", "protein_xref_unicarbkb", "Q14242", "" ], [ "P01024-1", "protein_xref_unicarbkb", "P01024", "" ], [ "P07686-1", "protein_xref_unicarbkb", "P07686", "" ], [ "Q9GZM5-1", "protein_xref_unicarbkb", "Q9GZM5", "" ], [ "P60568-1", "protein_xref_unicarbkb", "P60568", "" ], [ "P39060-3", "protein_xref_unicarbkb", "P39060", "" ], [ "P07996-1", "protein_xref_unicarbkb", "P07996", "" ], [ "Q92876-1", "protein_xref_unicarbkb", "Q92876", "" ], [ "Q9UBG0-1", "protein_xref_unicarbkb", "Q9UBG0", "" ], [ "Q13790-1", "protein_xref_unicarbkb", "Q13790", "" ], [ "P34741-1", "protein_xref_unicarbkb", "P34741", "" ], [ "P05787-1", "protein_xref_unicarbkb", "P05787", "" ], [ "P05783-1", "protein_xref_unicarbkb", "P05783", "" ], [ "P11166-1", "protein_xref_unicarbkb", "P11166", "" ], [ "P01861-1", "protein_xref_unicarbkb", "P01861", "" ], [ "P25311-1", "protein_xref_unicarbkb", "P25311", "" ], [ "P10643-1", "protein_xref_unicarbkb", "P10643", "" ], [ "P02787-1", "protein_xref_unicarbkb", "P02787", "" ], [ "P02788-1", "protein_xref_unicarbkb", "P02788", "" ], [ "P0DN86-1", "protein_xref_unicarbkb", "P01233", "" ], [ "Q14515-1", "protein_xref_unicarbkb", "Q14515", "" ], [ "P08709-1", "protein_xref_unicarbkb", "P08709", "" ], [ "P19827-1", "protein_xref_unicarbkb", "P19827", "" ], [ "P19823-1", "protein_xref_unicarbkb", "P19823", "" ], [ "P43652-1", "protein_xref_unicarbkb", "P43652", "" ], [ "P08138-1", "protein_xref_unicarbkb", "P08138", "" ], [ "P05556-1", "protein_xref_unicarbkb", "P05556", "" ], [ "P13646-1", "protein_xref_unicarbkb", "P13646", "" ], [ "P29120-1", "protein_xref_unicarbkb", "P29120", "" ], [ "P40225-1", "protein_xref_unicarbkb", "P40225", "" ], [ "P04114-1", "protein_xref_unicarbkb", "P04114", "" ], [ "Q13508-1", "protein_xref_unicarbkb", "Q13508", "" ], [ "P01563-1", "protein_xref_unicarbkb", "P01563", "" ], [ "P07359-1", "protein_xref_unicarbkb", "P07359", "" ], [ "P15941-1", "protein_xref_unicarbkb", "P15941", "" ], [ "P0C0L4-1", "protein_xref_unicarbkb", "P0C0L4", "" ], [ "P08100-1", "protein_xref_unicarbkb", "P08100", "" ], [ "P19652-1", "protein_xref_unicarbkb", "P19652", "" ], [ "P15144-1", "protein_xref_unicarbkb", "P15144", "" ], [ "P06729-1", "protein_xref_unicarbkb", "P06729", "" ], [ "P14151-1", "protein_xref_unicarbkb", "P14151", "" ], [ "Q9NY15-1", "protein_xref_unicarbkb", "Q9NY15", "" ], [ "O15123-1", "protein_xref_unicarbkb", "O15123", "" ], [ "P08047-1", "protein_xref_unicarbkb", "P08047", "" ], [ "Q5VWK5-1", "protein_xref_unicarbkb", "Q5VWK5", "" ], [ "P16150-1", "protein_xref_unicarbkb", "P16150", "" ], [ "P07498-1", "protein_xref_unicarbkb", "P07498", "" ], [ "P01877-1", "protein_xref_unicarbkb", "P01877", "" ], [ "Q9BX67-1", "protein_xref_unicarbkb", "Q9BX67", "" ], [ "Q08629-1", "protein_xref_unicarbkb", "Q08629", "" ], [ "Q9Y2Z0-1", "protein_xref_unicarbkb", "Q9Y2Z0", "" ], [ "P01876-1", "protein_xref_unicarbkb", "P01876", "" ], [ "P01130-1", "protein_xref_unicarbkb", "P01130", "" ], [ "P05121-1", "protein_xref_unicarbkb", "P05121", "" ], [ "O00469-1", "protein_xref_unicarbkb", "O00469", "" ], [ "P01588-1", "protein_xref_unicarbkb", "P01588", "" ], [ "P00450-1", "protein_xref_unicarbkb", "P00450", "" ], [ "P04745-1", "protein_xref_unicarbkb", "P04745", "" ], [ "Q13361-1", "protein_xref_unicarbkb", "Q13361", "" ], [ "P03372-1", "protein_xref_unicarbkb", "P03372", "" ], [ "Q96FE7-1", "protein_xref_unicarbkb", "Q96FE7", "" ], [ "P19883-1", "protein_xref_unicarbkb", "P19883", "" ], [ "O60486-1", "protein_xref_unicarbkb", "O60486", "" ], [ "P01859-1", "protein_xref_unicarbkb", "P01859", "" ], [ "Q8WWB7-1", "protein_xref_unicarbkb", "Q8WWB7", "" ], [ "P02656-1", "protein_xref_unicarbkb", "P02656", "" ], [ "Q13308-1", "protein_xref_unicarbkb", "Q13308", "" ], [ "P78423-1", "protein_xref_unicarbkb", "P78423", "" ], [ "P02489-1", "protein_xref_unicarbkb", "P02489", "" ] ] }, "readme": "Name\n - Human UniProtKB Xref UniCarbKB\n\nVersion\n - 1.7.13\n\nCreated on\n - 2019-03-15T16:50:35.816502\n\nModified on\n - 2020-04-10T11:40:40.491880\n\nCreated by\n - Jeet Vora [jeetvora@gwu.edu], Rahi Navelkar [rsn13@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Xavier Holmes [xavierh@email.gwu.edu]\n\nAuthors\n - Maria Martin [martin@ebi.ac.uk], Preethi Vasudev [pvasudev@ebi.ac.uk]\n\nChecksum\n - \n\nUsability Domain\n - The Human UniProtKB Xref UniCarbKB contains human [taxid:9606] UniProtKB canonical accessions cross-referenced to UniCarbKB database accessions/identifiers. The dataset is derived from 2019-09 UniProtKB release. If you use this dataset please provide proper attribution to EMBL-EBI-UniProtKB and GlyGen\n - UniCarbKB is an initiative that aims to promote the creation of an online information storage and search platform for glycomics and glycobiology research.\n\nDescription Domain\n Keywords\n - glycoprotein\n - glycan\n - UniCarbKB\n - cross-reference\n\n Pipeline Steps\n - Step-1: The script loads the UniProtKB canonical accessions that are cross-referenced to UniCarbKB database accessions/identifiers from the triplestore containing triples from nt file and extracts the data as a csv dataset\n\nExecution Domain\n Scripts - https://github.com/GW-HIVE/glygen-backend-integration/blob/master/pipeline/integrator/make-protein-dataset.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: uniprot-proteome-homo-sapiens.nt\n URI: https://data.glygen.org/ln2wwwdata/source/uniprot-proteome-homo-sapiens.nt\n Name: human_protein_masterlist.csv\n URI: https://data.glygen.org/ln2wwwdata/reviewed/human_protein_masterlist.csv\n Output Subdomain\n Name: human_protein_xref_unicarbkb.csv\n URI: http://data.glygen.org/ln2wwwdata/reviewed/human_protein_xref_unicarbkb.csv\n Name: human_protein_xref_unicarbkb.stat.csv\n URI: http://data.glygen.org/ln2wwwdata/reviewed/human_protein_xref_unicarbkb.stat.csv\n\nFields\n Name: \"uniprotkb_canonical_ac\"\n Description: \"\"\n Unique Values: \"240\"\n Name: \"xref_label\"\n Description: \"Label/Name associated with x-ref\"\n Unique Values: \"1\"\n Name: \"xref_id\"\n Description: \"ID of the X-ref\"\n Unique Values: \"240\"\n Name: \"xref_key\"\n Description: \"Source key associated to the xref_id\"\n Unique Values: \"1\"", "downloadurl": "/ln2data/releases/data/v-1.7.13/reviewed/human_protein_xref_unicarbkb.csv" }