{ "bcoid": "GLY_000116", "title": "Mouse UniProtKB Xref OrthoDB", "description": "The Mouse UniProtKB Xref OrthoDB contains mouse [taxid:10090] UniProtKB canonical accessions cross-referenced ...", "filename": "mouse_protein_xref_orthodb.csv", "filetype": "csv", "categories": { "species": "Mus musculus", "molecule": "Protein", "tags": "Orthodb cross-references", "file_type": "csv", "status": "Reviewed", "scope": "internal" }, "minitable": { "content": [ [ "Q8BH24-1...", "protein_xref..." ], [ "Q8BH27-1...", "protein_xref..." ] ], "headers": [ "uniprotkb_ca...", "xref_key..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "uniprotkb_canonical_ac" }, { "type": "string", "label": "xref_key" }, { "type": "string", "label": "xref_id" }, { "type": "string", "label": "xref_label" } ], [ "Q8BH24-1", "protein_xref_orthodb", "641127at2759", "" ], [ "Q8BH27-1", "protein_xref_orthodb", "619649at2759", "" ], [ "Q8BH26-1", "protein_xref_orthodb", "1528152at2759", "" ], [ "Q8VF69-1", "protein_xref_orthodb", "1029724at2759", "" ], [ "Q8VF63-1", "protein_xref_orthodb", "1075814at2759", "" ], [ "Q8VF62-1", "protein_xref_orthodb", "1048648at2759", "" ], [ "Q8VF66-1", "protein_xref_orthodb", "999769at2759", "" ], [ "Q8VF65-1", "protein_xref_orthodb", "999769at2759", "" ], [ "Q8VF64-1", "protein_xref_orthodb", "1075814at2759", "" ], [ "B2RXV4-1", "protein_xref_orthodb", "702737at2759", "" ], [ "E9Q3P4-1", "protein_xref_orthodb", "205405at2759", "" ], [ "Q9CXG9-1", "protein_xref_orthodb", "281828at2759", "" ], [ "Q07968-1", "protein_xref_orthodb", "296899at2759", "" ], [ "A5H0M4-1", "protein_xref_orthodb", "1514637at2759", "" ], [ "Q9CXG3-1", "protein_xref_orthodb", "1436035at2759", "" ], [ "B1AQ85-1", "protein_xref_orthodb", "1637710at2759", "" ], [ "P03899-1", "protein_xref_orthodb", "1605459at2759", "" ], [ "O35153-1", "protein_xref_orthodb", "1536545at2759", "" ], [ "P03893-1", "protein_xref_orthodb", "1153818at2759", "" ], [ "Q9QYH9-1", "protein_xref_orthodb", "1371007at2759", "" ], [ "P52479-1", "protein_xref_orthodb", "1078977at2759", "" ], [ "P02762-1", "protein_xref_orthodb", "1107052at2759", "" ], [ "Q9QYH6-1", "protein_xref_orthodb", "1195799at2759", "" ], [ "Q3SXJ3-1", "protein_xref_orthodb", "905324at2759", "" ], [ "O08537-1", "protein_xref_orthodb", "487299at2759", "" ], [ "Q08AU9-1", "protein_xref_orthodb", "1248778at2759", "" ], [ "Q08AU7-1", "protein_xref_orthodb", "1056604at2759", "" ], [ "Q5EBH1-1", "protein_xref_orthodb", "1120975at2759", "" ], [ "Q61409-1", "protein_xref_orthodb", "904682at2759", "" ], [ "A2AVK5-1", "protein_xref_orthodb", "1107575at2759", "" ], [ "Q80YU0-1", "protein_xref_orthodb", "580247at2759", "" ], [ "Q61400-1", "protein_xref_orthodb", "998214at2759", "" ], [ "Q61406-1", "protein_xref_orthodb", "845963at2759", "" ], [ "Q5SRT8-1", "protein_xref_orthodb", "993640at2759", "" ], [ "P70414-1", "protein_xref_orthodb", "490546at2759", "" ], [ "P70419-1", "protein_xref_orthodb", "606683at2759", "" ], [ "Q9EP78-1", "protein_xref_orthodb", "1246608at2759", "" ], [ "Q9EP79-1", "protein_xref_orthodb", "1390012at2759", "" ], [ "Q3URK3-1", "protein_xref_orthodb", "29059at2759", "" ], [ "Q9EP72-1", "protein_xref_orthodb", "1348328at2759", "" ], [ "Q9EP73-1", "protein_xref_orthodb", "892262at2759", "" ], [ "Q9EP71-1", "protein_xref_orthodb", "876605at2759", "" ], [ "Q9EP75-1", "protein_xref_orthodb", "1247045at2759", "" ], [ "Q3URK1-1", "protein_xref_orthodb", "1433004at2759", "" ], [ "S4R213-1", "protein_xref_orthodb", "700520at2759", "" ], [ "P53702-1", "protein_xref_orthodb", "1282808at2759", "" ], [ "Q8R349-1", "protein_xref_orthodb", "905026at2759", "" ], [ "Q8R344-1", "protein_xref_orthodb", "1604272at2759", "" ], [ "O08911-1", "protein_xref_orthodb", "683132at2759", "" ], [ "Q80WC9-1", "protein_xref_orthodb", "881306at2759", "" ], [ "O08912-1", "protein_xref_orthodb", "606683at2759", "" ], [ "O08915-1", "protein_xref_orthodb", "1278789at2759", "" ], [ "O08914-1", "protein_xref_orthodb", "852596at2759", "" ], [ "O08917-1", "protein_xref_orthodb", "812555at2759", "" ], [ "Q80WC3-1", "protein_xref_orthodb", "11077at2759", "" ], [ "O08918-1", "protein_xref_orthodb", "1015714at2759", "" ], [ "Q80WC1-1", "protein_xref_orthodb", "469344at2759", "" ], [ "Q80WC7-1", "protein_xref_orthodb", "1226524at2759", "" ], [ "Q9JHY4-1", "protein_xref_orthodb", "1571744at2759", "" ], [ "Q91ZK4-1", "protein_xref_orthodb", "1270742at2759", "" ], [ "Q91ZK0-1", "protein_xref_orthodb", "641707at2759", "" ], [ "Q9D4U4-1", "protein_xref_orthodb", "916843at2759", "" ], [ "P19070-1", "protein_xref_orthodb", "1270676at2759", "" ], [ "Q8BZM0-1", "protein_xref_orthodb", "709680at2759", "" ], [ "Q8BZM1-1", "protein_xref_orthodb", "1088011at2759", "" ], [ "Q4VC33-1", "protein_xref_orthodb", "1087488at2759", "" ], [ "Q66GT5-1", "protein_xref_orthodb", "1386941at2759", "" ], [ "P50429-1", "protein_xref_orthodb", "515367at2759", "" ], [ "Q8BTJ4-1", "protein_xref_orthodb", "999163at2759", "" ], [ "Q99LV7-1", "protein_xref_orthodb", "1537024at2759", "" ], [ "Q4G5Y1-1", "protein_xref_orthodb", "1263405at2759", "" ], [ "P59708-1", "protein_xref_orthodb", "1603846at2759", "" ], [ "F8VQK3-1", "protein_xref_orthodb", "531253at2759", "" ], [ "Q9R1N9-1", "protein_xref_orthodb", "669310at2759", "" ], [ "A2AT96-1", "protein_xref_orthodb", "996660at2759", "" ], [ "Q3V3Q4-1", "protein_xref_orthodb", "1577634at2759", "" ], [ "Q7M729-1", "protein_xref_orthodb", "1219179at2759", "" ], [ "Q3V3Q7-1", "protein_xref_orthodb", "291515at2759", "" ], [ "Q7M724-1", "protein_xref_orthodb", "1010573at2759", "" ], [ "Q7M725-1", "protein_xref_orthodb", "1010573at2759", "" ], [ "Q7M720-1", "protein_xref_orthodb", "1061430at2759", "" ], [ "Q7M721-1", "protein_xref_orthodb", "1339037at2759", "" ], [ "Q7M722-1", "protein_xref_orthodb", "1010573at2759", "" ], [ "Q7M723-1", "protein_xref_orthodb", "1010573at2759", "" ] ] }, "readme": "Name\n - Mouse UniProtKB Xref OrthoDB\n\nVersion\n - 1.7.13\n\nCreated on\n - 2019-03-15T14:58:32.333977\n\nModified on\n - 2020-04-10T12:41:18.469469\n\nCreated by\n - Jeet Vora [jeetvora@gwu.edu], Rahi Navelkar [rsn13@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Xavier Holmes [xavierh@email.gwu.edu]\n\nAuthors\n - Maria Martin [martin@ebi.ac.uk], Preethi Vasudev [pvasudev@ebi.ac.uk]\n\nChecksum\n - \n\nUsability Domain\n - The Mouse UniProtKB Xref OrthoDB contains mouse [taxid:10090] UniProtKB canonical accessions cross-referenced to OrthoDB database accessions/identifiers. The dataset is derived from 2019-09 UniProtKB release. If you use this dataset please provide proper attribution to EMBL-EBI-UniProtKB and GlyGen\n - OrthoDB is a comprehensive catalog of orthologs, i.e. descendants from a single gene of the last common ancestor of a specific phylogeny radiation termed level-of-orthology.\n\nDescription Domain\n Keywords\n - orthologs\n - OrthoDB\n - cross-reference\n\n Pipeline Steps\n - Step-1: The script loads the UniProtKB canonical accessions that are cross-referenced to OrthoDB database accessions/identifiers from the triplestore containing triples from nt file and extracts the data as a csv dataset\n\nExecution Domain\n Scripts - https://github.com/GW-HIVE/glygen-backend-integration/blob/master/pipeline/integrator/make-protein-dataset.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: uniprot-proteome-mus-musculus.nt\n URI: https://data.glygen.org/ln2wwwdata/source/uniprot-proteome-mus-musculus.nt\n Name: mouse_protein_masterlist.csv\n URI: https://data.glygen.org/ln2wwwdata/reviewed/mouse_protein_masterlist.csv\n Output Subdomain\n Name: mouse_protein_xref_orthodb.csv\n URI: http://data.glygen.org/ln2wwwdata/reviewed/mouse_protein_xref_orthodb.csv\n Name: mouse_protein_xref_orthodb.stat.csv\n URI: http://data.glygen.org/ln2wwwdata/reviewed/mouse_protein_xref_orthodb.stat.csv\n\nFields\n Name: \"uniprotkb_canonical_ac\"\n Description: \"\"\n Unique Values: \"19120\"\n Name: \"xref_label\"\n Description: \"Label/Name associated with x-ref\"\n Unique Values: \"1\"\n Name: \"xref_id\"\n Description: \"ID of the X-ref\"\n Unique Values: \"9905\"\n Name: \"xref_key\"\n Description: \"Source key associated to the xref_id\"\n Unique Values: \"1\"", "downloadurl": "/ln2data/releases/data/v-1.7.13/reviewed/mouse_protein_xref_orthodb.csv" }