{ "bcoid": "GLY_000113", "title": "Human UniProtKB Xref OMA", "description": "The Human UniProtKB Xref OMA contains human [taxid:9606] UniProtKB canonical accessions cross-referenced ...", "filename": "human_protein_xref_oma.csv", "filetype": "csv", "categories": { "species": "Homo sapiens", "molecule": "Protein", "tags": "Oma cross-references", "file_type": "csv", "status": "Reviewed", "scope": "internal" }, "minitable": { "content": [ [ "Q8TBF4-1...", "protein_xref..." ], [ "Q9NRJ4-1...", "protein_xref..." ] ], "headers": [ "uniprotkb_ca...", "xref_key..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "uniprotkb_canonical_ac" }, { "type": "string", "label": "xref_key" }, { "type": "string", "label": "xref_id" }, { "type": "string", "label": "xref_label" } ], [ "Q8TBF4-1", "protein_xref_oma", "FALTNND", "" ], [ "Q9NRJ4-1", "protein_xref_oma", "CRNNMNP", "" ], [ "Q9NQ79-1", "protein_xref_oma", "CRAKRRC", "" ], [ "Q9NRQ5-1", "protein_xref_oma", "LENAQMQ", "" ], [ "Q8IZF5-1", "protein_xref_oma", "AQGFRWE", "" ], [ "P30613-1", "protein_xref_oma", "MVRVHHL", "" ], [ "Q5H9L4-1", "protein_xref_oma", "KQIHYME", "" ], [ "Q9BZL4-1", "protein_xref_oma", "RRVGKEW", "" ], [ "Q9NVL1-1", "protein_xref_oma", "MESTWRW", "" ], [ "Q5QJ38-1", "protein_xref_oma", "GRTSETQ", "" ], [ "Q9NQ75-1", "protein_xref_oma", "GVSYKVP", "" ], [ "P20930-1", "protein_xref_oma", "CKRRAVH", "" ], [ "P20933-1", "protein_xref_oma", "KFFGAVI", "" ], [ "P20936-1", "protein_xref_oma", "KEPYMEV", "" ], [ "Q8NFX7-1", "protein_xref_oma", "WTIDQLR", "" ], [ "Q9UM21-1", "protein_xref_oma", "FWAVTPV", "" ], [ "Q496A3-1", "protein_xref_oma", "SERMVDK", "" ], [ "P83859-1", "protein_xref_oma", "CRFRFGR", "" ], [ "P40617-1", "protein_xref_oma", "MCKNELL", "" ], [ "Q70EL4-1", "protein_xref_oma", "TNSLCNQ", "" ], [ "Q15573-1", "protein_xref_oma", "YERMKHS", "" ], [ "Q15572-1", "protein_xref_oma", "PSSWRWA", "" ], [ "Q9BQP9-1", "protein_xref_oma", "NITNMQL", "" ], [ "Q9H999-1", "protein_xref_oma", "AECYYFE", "" ], [ "P23919-1", "protein_xref_oma", "RPAEMMR", "" ], [ "Q8NHX4-1", "protein_xref_oma", "TFYRKPP", "" ], [ "Q8NHX9-1", "protein_xref_oma", "PPCGFTE", "" ], [ "A8MU46-1", "protein_xref_oma", "EQDQGVE", "" ], [ "Q6ZNW5-1", "protein_xref_oma", "SAWRQRM", "" ], [ "Q9NXR8-1", "protein_xref_oma", "DNCPYEW", "" ], [ "Q9C0H2-1", "protein_xref_oma", "QVNPFQQ", "" ], [ "Q9C0H5-1", "protein_xref_oma", "LGTCAQF", "" ], [ "Q4VXU2-1", "protein_xref_oma", "DHMNGKE", "" ], [ "Q9C0H6-1", "protein_xref_oma", "SMCAPMA", "" ], [ "Q9NXR1-2", "protein_xref_oma", "CICERPA", "" ], [ "Q00537-1", "protein_xref_oma", "GFRNSTY", "" ], [ "Q00536-1", "protein_xref_oma", "LCSHSEA", "" ], [ "Q9NXR5-1", "protein_xref_oma", "CHLNRFY", "" ], [ "Q96J66-1", "protein_xref_oma", "MKNKMCV", "" ], [ "Q9UBM8-1", "protein_xref_oma", "CLLFMNL", "" ], [ "O00716-1", "protein_xref_oma", "CDFDKMP", "" ], [ "Q3LI54-1", "protein_xref_oma", "PLCYGGY", "" ], [ "Q9UBM1-1", "protein_xref_oma", "FNPTFWN", "" ], [ "A8MTA8-1", "protein_xref_oma", "QKDPKYL", "" ], [ "Q9UBM4-1", "protein_xref_oma", "REEQMPR", "" ], [ "P24522-1", "protein_xref_oma", "ITIGVYE", "" ], [ "Q13835-1", "protein_xref_oma", "LQHTCFQ", "" ], [ "Q7Z3T1-1", "protein_xref_oma", "CGHRSVD", "" ], [ "A0AVF1-1", "protein_xref_oma", "CAEFWVA", "" ], [ "P40424-1", "protein_xref_oma", "STPNSAX", "" ], [ "P40425-1", "protein_xref_oma", "GAGQMYS", "" ], [ "Q8IZK6-1", "protein_xref_oma", "MARQPYR", "" ], [ "P51991-1", "protein_xref_oma", "GPNVPRG", "" ], [ "Q13838-1", "protein_xref_oma", "VCADEAP", "" ], [ "O00337-1", "protein_xref_oma", "EFVAYMN", "" ], [ "Q8TDW7-3", "protein_xref_oma", "DPMAINI", "" ], [ "Q5M775-1", "protein_xref_oma", "KEVCDRQ", "" ], [ "Q8WTV0-1", "protein_xref_oma", "PIMWFED", "" ], [ "A0A075B6S2-1", "protein_xref_oma", "CMQATHA", "" ], [ "P08842-1", "protein_xref_oma", "CFHTHVC", "" ], [ "P03891-1", "protein_xref_oma", "WVPEVTQ", "" ], [ "Q5VUR7-1", "protein_xref_oma", "NIQGDFI", "" ], [ "P48960-1", "protein_xref_oma", "ARMLLNW", "" ], [ "P03897-1", "protein_xref_oma", "RFPVKYY", "" ], [ "P02768-1", "protein_xref_oma", "DPHACYA", "" ], [ "A0A075B7E8-1", "protein_xref_oma", "LEWISHF", "" ], [ "P20645-1", "protein_xref_oma", "MYIFRVC", "" ], [ "P05386-1", "protein_xref_oma", "SQETACV", "" ], [ "P05387-1", "protein_xref_oma", "MKMIAAY", "" ], [ "P24863-1", "protein_xref_oma", "ANYWEST", "" ], [ "P08559-1", "protein_xref_oma", "LGYEMPC", "" ], [ "Q7L266-1", "protein_xref_oma", "GITGKWP", "" ], [ "Q9UQ07-1", "protein_xref_oma", "WQISKEG", "" ], [ "Q9UQ05-1", "protein_xref_oma", "NVCFLGD", "" ], [ "Q9UJ70-1", "protein_xref_oma", "DTMGSMF", "" ], [ "Q9UJ71-1", "protein_xref_oma", "QFCVSRN", "" ], [ "Q9UJ72-1", "protein_xref_oma", "EAYYLQY", "" ], [ "O60508-1", "protein_xref_oma", "SGGYVCF", "" ], [ "Q15166-1", "protein_xref_oma", "TFIDKDH", "" ], [ "Q9UJ78-4", "protein_xref_oma", "TWPRILN", "" ], [ "Q86WA9-1", "protein_xref_oma", "CELRVSN", "" ], [ "P35579-1", "protein_xref_oma", "TDMRKKM", "" ], [ "O15254-1", "protein_xref_oma", "IKGCFSM", "" ], [ "Q86WA8-1", "protein_xref_oma", "EYFLHQQ", "" ] ] }, "readme": "Name\n - Human UniProtKB Xref OMA\n\nVersion\n - 1.7.13\n\nCreated on\n - 2019-01-23T17:21:05.959744\n\nModified on\n - 2020-04-10T11:37:06.606749\n\nCreated by\n - Jeet Vora [jeetvora@gwu.edu], Rahi Navelkar [rsn13@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Xavier Holmes [xavierh@email.gwu.edu]\n\nAuthors\n - Maria Martin [martin@ebi.ac.uk], Preethi Vasudev [pvasudev@ebi.ac.uk]\n\nChecksum\n - \n\nUsability Domain\n - The Human UniProtKB Xref OMA contains human [taxid:9606] UniProtKB canonical accessions cross-referenced to OMA database accessions/identifiers. The dataset is derived from 2019-09 UniProtKB release. If you use this dataset please provide proper attribution to EMBL-EBI-UniProtKB and GlyGen\n - The OMA (Orthologous MAtrix) project is a method and database for the inference of orthologs among complete genomes.\n\nDescription Domain\n Keywords\n - orthologs\n - OMA\n - cross-reference\n\n Pipeline Steps\n - Step-1: The script loads the UniProtKB canonical accessions that are cross-referenced to OMA database accessions/identifiers from the triplestore containing triples from nt file and extracts the data as a csv dataset\n\nExecution Domain\n Scripts - https://github.com/GW-HIVE/glygen-backend-integration/blob/master/pipeline/integrator/make-protein-dataset.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: uniprot-proteome-homo-sapiens.nt\n URI: https://data.glygen.org/ln2wwwdata/source/uniprot-proteome-homo-sapiens.nt\n Name: human_protein_masterlist.csv\n URI: https://data.glygen.org/ln2wwwdata/reviewed/human_protein_masterlist.csv\n Output Subdomain\n Name: human_protein_xref_oma.csv\n URI: http://data.glygen.org/ln2wwwdata/reviewed/human_protein_xref_oma.csv\n Name: human_protein_xref_oma.stat.csv\n URI: http://data.glygen.org/ln2wwwdata/reviewed/human_protein_xref_oma.stat.csv\n\nFields\n Name: \"uniprotkb_canonical_ac\"\n Description: \"\"\n Unique Values: \"17324\"\n Name: \"xref_label\"\n Description: \"Label/Name associated with x-ref\"\n Unique Values: \"1\"\n Name: \"xref_id\"\n Description: \"ID of the X-ref\"\n Unique Values: \"17305\"\n Name: \"xref_key\"\n Description: \"Source key associated to the xref_id\"\n Unique Values: \"1\"", "downloadurl": "/ln2data/releases/data/v-1.7.13/reviewed/human_protein_xref_oma.csv" }