{ "bcoid": "GLY_000102", "title": "Human UniProtKB Xref HGNC", "description": "The Human UniProtKB Xref HGNC dataset contains human [taxid:9606] UniProtKB canonical accessions cross-referenced ...", "filename": "human_protein_xref_hgnc.csv", "filetype": "csv", "categories": { "species": "Homo sapiens", "molecule": "Protein", "tags": "Hgnc cross-references", "file_type": "csv", "status": "Reviewed", "scope": "internal" }, "minitable": { "content": [ [ "Q8TBF5-1...", "protein_xref..." ], [ "Q8TBF4-1...", "protein_xref..." ] ], "headers": [ "uniprotkb_ca...", "xref_key..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "uniprotkb_canonical_ac" }, { "type": "string", "label": "xref_key" }, { "type": "string", "label": "xref_id" }, { "type": "string", "label": "xref_label" } ], [ "Q8TBF5-1", "protein_xref_hgnc", "26046", "PIGX" ], [ "Q8TBF4-1", "protein_xref_hgnc", "29620", "ZCRB1" ], [ "Q9NRJ4-1", "protein_xref_hgnc", "15530", "TULP4" ], [ "Q9NQ79-1", "protein_xref_hgnc", "14882", "CRTAC1" ], [ "Q9NVL8-1", "protein_xref_hgnc", "20189", "CCDC198" ], [ "Q9NRQ5-1", "protein_xref_hgnc", "24810", "SMCO4" ], [ "Q8IZF5-1", "protein_xref_hgnc", "18989", "ADGRF3" ], [ "P30613-1", "protein_xref_hgnc", "9020", "PKLR" ], [ "Q5H9L4-1", "protein_xref_hgnc", "11548", "TAF7L" ], [ "Q9BZL4-1", "protein_xref_hgnc", "14947", "PPP1R12C" ], [ "Q9NVL1-1", "protein_xref_hgnc", "25561", "FAM86C1" ], [ "Q5QJ38-1", "protein_xref_hgnc", "31796", "TCHHL1" ], [ "Q9NQ75-1", "protein_xref_hgnc", "15878", "CASS4" ], [ "P20930-1", "protein_xref_hgnc", "3748", "FLG" ], [ "P20933-1", "protein_xref_hgnc", "318", "AGA" ], [ "P20936-1", "protein_xref_hgnc", "9871", "RASA1" ], [ "A0A1W2PQ27-1", "protein_xref_hgnc", "43626", "SSU72P7" ], [ "Q8NFX7-1", "protein_xref_hgnc", "19666", "STXBP6" ], [ "Q9UM21-1", "protein_xref_hgnc", "7047", "MGAT4A" ], [ "Q496A3-1", "protein_xref_hgnc", "22957", "SPATS1" ], [ "P83859-1", "protein_xref_hgnc", "29982", "QRFP" ], [ "P40617-1", "protein_xref_hgnc", "695", "ARL4A" ], [ "Q70EL4-1", "protein_xref_hgnc", "20072", "USP43" ], [ "Q8TBF2-1", "protein_xref_hgnc", "28390", "PRXL2B" ], [ "Q15573-1", "protein_xref_hgnc", "11532", "TAF1A" ], [ "Q15572-1", "protein_xref_hgnc", "11534", "TAF1C" ], [ "Q9BQP9-1", "protein_xref_hgnc", "16204", "BPIFA3" ], [ "Q9H999-1", "protein_xref_hgnc", "19365", "PANK3" ], [ "P23919-1", "protein_xref_hgnc", "3061", "DTYMK" ], [ "Q8NHX4-1", "protein_xref_hgnc", "17884", "SPATA3" ], [ "Q8NHX9-1", "protein_xref_hgnc", "20820", "TPCN2" ], [ "A8MU46-1", "protein_xref_hgnc", "32394", "SMTNL1" ], [ "Q6ZNW5-1", "protein_xref_hgnc", "34360", "GDPGP1" ], [ "Q9NXR8-1", "protein_xref_hgnc", "14587", "ING3" ], [ "Q9C0H2-1", "protein_xref_hgnc", "22222", "TTYH3" ], [ "Q9C0H5-1", "protein_xref_hgnc", "29351", "ARHGAP39" ], [ "Q4VXU2-1", "protein_xref_hgnc", "15797", "PABPC1L" ], [ "Q9C0H6-1", "protein_xref_hgnc", "6355", "KLHL4" ], [ "Q9C0H9-5", "protein_xref_hgnc", "29506", "SRCIN1" ], [ "Q9NXR1-2", "protein_xref_hgnc", "17619", "NDE1" ], [ "Q00537-1", "protein_xref_hgnc", "8750", "CDK17" ], [ "Q00536-1", "protein_xref_hgnc", "8749", "CDK16" ], [ "Q9NXR5-1", "protein_xref_hgnc", "20265", "ANKRD10" ], [ "Q00532-1", "protein_xref_hgnc", "1781", "CDKL1" ], [ "Q96J66-1", "protein_xref_hgnc", "14639", "ABCC11" ], [ "O00244-1", "protein_xref_hgnc", "798", "ATOX1" ], [ "Q9UBM8-1", "protein_xref_hgnc", "30871", "MGAT4C" ], [ "Q9H2V7-1", "protein_xref_hgnc", "30621", "SPNS1" ], [ "O00241-1", "protein_xref_hgnc", "15928", "SIRPB1" ], [ "O00716-1", "protein_xref_hgnc", "3115", "E2F3" ], [ "Q8IX01-1", "protein_xref_hgnc", "18641", "SUGP2" ], [ "Q3LI54-1", "protein_xref_hgnc", "33898", "KRTAP19-8" ], [ "Q9UBM1-1", "protein_xref_hgnc", "8830", "PEMT" ], [ "A8MTA8-1", "protein_xref_hgnc", "34242", "FAM166B" ], [ "Q9UBM4-1", "protein_xref_hgnc", "8158", "OPTC" ], [ "P24522-1", "protein_xref_hgnc", "4095", "GADD45A" ], [ "Q13835-1", "protein_xref_hgnc", "9023", "PKP1" ], [ "Q7Z3T1-1", "protein_xref_hgnc", "15021", "OR2W3" ], [ "A0AVF1-1", "protein_xref_hgnc", "21882", "TTC26" ], [ "P40424-1", "protein_xref_hgnc", "8632", "PBX1" ], [ "P40425-1", "protein_xref_hgnc", "8633", "PBX2" ], [ "P40426-1", "protein_xref_hgnc", "8634", "PBX3" ], [ "Q8IZK6-1", "protein_xref_hgnc", "13357", "MCOLN2" ], [ "P40429-1", "protein_xref_hgnc", "10304", "RPL13A" ], [ "P51991-1", "protein_xref_hgnc", "24941", "HNRNPA3" ], [ "Q13838-1", "protein_xref_hgnc", "13917", "DDX39B" ], [ "O00337-1", "protein_xref_hgnc", "11001", "SLC28A1" ], [ "Q8TDW7-3", "protein_xref_hgnc", "23112", "FAT3" ], [ "Q5M775-1", "protein_xref_hgnc", "30615", "SPECC1" ], [ "Q8WTV0-1", "protein_xref_hgnc", "1664", "SCARB1" ], [ "Q9H2I8-1", "protein_xref_hgnc", "23405", "LRMDA" ], [ "A0A075B6S2-1", "protein_xref_hgnc", "5800", "IGKV2D-29" ], [ "P08842-1", "protein_xref_hgnc", "11425", "STS" ], [ "P03891-1", "protein_xref_hgnc", "7456", "MT-ND2" ], [ "Q5VUR7-1", "protein_xref_hgnc", "31981", "ANKRD20A3" ], [ "P48960-1", "protein_xref_hgnc", "1711", "CD97" ], [ "P48960-1", "protein_xref_hgnc", "1711", "ADGRE5" ], [ "P03897-1", "protein_xref_hgnc", "7458", "MT-ND3" ], [ "P02768-1", "protein_xref_hgnc", "399", "ALB" ], [ "A0A075B7E8-1", "protein_xref_hgnc", "5637", "IGHV3OR16-13" ], [ "P20645-1", "protein_xref_hgnc", "6752", "M6PR" ], [ "P05386-1", "protein_xref_hgnc", "10372", "RPLP1" ], [ "P05387-1", "protein_xref_hgnc", "10377", "RPLP2" ], [ "P24863-1", "protein_xref_hgnc", "1581", "CCNC" ] ] }, "readme": "Name\n - Human UniProtKB Xref HGNC\n\nVersion\n - 1.7.13\n\nCreated on\n - 2019-03-15T12:12:30.919588\n\nModified on\n - 2020-04-10T11:34:52.076213\n\nCreated by\n - Jeet Vora [jeetvora@gwu.edu], Rahi Navelkar [rsn13@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Xavier Holmes [xavierh@email.gwu.edu]\n\nAuthors\n - Maria Martin [martin@ebi.ac.uk], Preethi Vasudev [pvasudev@ebi.ac.uk]\n\nChecksum\n - \n\nUsability Domain\n - The Human UniProtKB Xref HGNC dataset contains human [taxid:9606] UniProtKB canonical accessions cross-referenced to HGNC accessions/identifiers. he dataset is derived from 2019-09 UniProtKB release. If you use this dataset please provide proper attribution to EMBL-EBI-UniProtKB and GlyGen\n - The HUGO Gene Nomenclature Committee is a committee of the Human Genome Organisation that sets the standards for human gene nomenclature. The HGNC approves a unique and meaningful name for every known human gene, based on a query of experts\n\nDescription Domain\n Keywords\n - HGNC\n - gene symbol\n - gene name\n\n Pipeline Steps\n - Step-1: The script loads the UniProtKB canonical accessions that are cross-referenced to HGNC database accessions/identifiers from the triplestore containing triples from nt file and extracts the data as a csv dataset\n\nExecution Domain\n Scripts - https://github.com/GW-HIVE/glygen-backend-integration/blob/master/pipeline/integrator/make-protein-dataset.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: uniprot-proteome-homo-sapiens.nt\n URI: https://data.glygen.org/ln2wwwdata/source/uniprot-proteome-homo-sapiens.nt\n Name: human_protein_masterlist.csv\n URI: https://data.glygen.org/ln2wwwdata/reviewed/human_protein_masterlist.csv\n Output Subdomain\n Name: human_protein_xref_hgnc.csv\n URI: http://data.glygen.org/ln2wwwdata/reviewed/human_protein_xref_hgnc.csv\n Name: human_protein_xref_hgnc.stat.csv\n URI: http://data.glygen.org/ln2wwwdata/reviewed/human_protein_xref_hgnc.stat.csv\n\nFields\n Name: \"uniprotkb_canonical_ac\"\n Description: \"\"\n Unique Values: \"20264\"\n Name: \"xref_label\"\n Description: \"Label/Name associated with x-ref\"\n Unique Values: \"20448\"\n Name: \"xref_id\"\n Description: \"ID of the X-ref\"\n Unique Values: \"20405\"\n Name: \"xref_key\"\n Description: \"Source key associated to the xref_id\"\n Unique Values: \"1\"", "downloadurl": "/ln2data/releases/data/v-1.7.13/reviewed/human_protein_xref_hgnc.csv" }