{ "bcoid": "GLY_000088", "title": "Mouse Protein Recommended Names (UniProtKB)", "description": "The Mouse Protein Recommended Names (UniProtKB) dataset contains UniProtKB recommended names for mouse ...", "filename": "mouse_protein_recnames.csv", "filetype": "csv", "categories": { "species": "Mus musculus", "molecule": "Protein", "tags": "Protein Recommended Names", "file_type": "csv", "status": "Reviewed", "scope": "internal" }, "minitable": { "content": [ [ "Q8BH24-1...", "Transmembran..." ], [ "Q8BH27-1...", "Multiple epi..." ] ], "headers": [ "uniprotkb_ca...", "recommended_..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "uniprotkb_canonical_ac" }, { "type": "string", "label": "recommended_name_full" }, { "type": "string", "label": "recommended_name_short" }, { "type": "string", "label": "ec_name" } ], [ "Q8BH24-1", "Transmembrane 9 superfamily member 4", "", "" ], [ "Q8BH27-1", "Multiple epidermal growth factor-like domains protein 9", "Multiple EGF-like domains protein 9", "" ], [ "Q8BH26-1", "Transmembrane protein 251", "", "" ], [ "Q8VF69-1", "Olfactory receptor", "", "" ], [ "Q9JHR7-1", "Insulin-degrading enzyme", "", "3.4.24.56" ], [ "Q8VF62-1", "Olfactory receptor", "", "" ], [ "Q8VF66-1", "Olfactory receptor 469", "", "" ], [ "Q8VF65-1", "Olfactory receptor 470", "", "" ], [ "B2RXV4-1", "Feline leukemia virus subgroup C receptor-related protein 1", "Feline leukemia virus subgroup C receptor", "" ], [ "Q9CXG9-1", "PHD finger protein 19", "", "" ], [ "Q07968-1", "Coagulation factor XIII B chain", "", "" ], [ "Q9CXG3-1", "Peptidyl-prolyl cis-trans isomerase-like 4", "PPIase", "5.2.1.8" ], [ "A0A1B0GST9-1", "Cortexin domain-containing 1", "", "" ], [ "A0A1B0GST0-1", "Olfactory receptor", "", "" ], [ "P01942-1", "Hemoglobin subunit alpha", "", "" ], [ "P03899-1", "NADH-ubiquinone oxidoreductase chain 3", "", "7.1.1.2" ], [ "O35153-1", "BET1-like protein", "", "" ], [ "P03893-1", "NADH-ubiquinone oxidoreductase chain 2", "", "7.1.1.2" ], [ "Q9QYH9-1", "Tumor necrosis factor ligand superfamily member 14", "", "" ], [ "P52479-1", "Ubiquitin carboxyl-terminal hydrolase 10", "", "3.4.19.12" ], [ "P02762-1", "Major urinary protein 6", "MUP 6", "" ], [ "Q9QYH6-1", "Melanoma-associated antigen D1", "", "" ], [ "Q3SXJ3-1", "Olfactory receptor", "", "" ], [ "O08537-1", "Estrogen receptor beta", "ER-beta", "" ], [ "Q08AU9-1", "UPF0450 protein C17orf58 homolog", "", "" ], [ "Q08AU7-1", "Myeloid-associated differentiation marker-like protein 2", "", "" ], [ "Q5EBH1-1", "Ras association domain-containing protein 5", "", "" ], [ "Q61409-1", "cGMP-inhibited 3',5'-cyclic phosphodiesterase B", "", "3.1.4.17" ], [ "A2AVK5-1", "Olfactory receptor", "", "" ], [ "Q80YU0-1", "Protein ABHD16B", "", "3.-.-.-" ], [ "Q61400-1", "Carcinoembryonic antigen-related cell adhesion molecule 10", "CEA-related cell adhesion molecule 10", "" ], [ "Q61400-1", "Carcinoembryonic antigen-related cell adhesion molecule 10", "CEA10", "" ], [ "Q61400-1", "Carcinoembryonic antigen-related cell adhesion molecule 10", "Carcinoembryonic antigen 10", "" ], [ "Q5SRT8-1", "Cyclin-J-like protein", "", "" ], [ "P70414-1", "Sodium/calcium exchanger 1", "", "" ], [ "P70412-1", "CUB and zona pellucida-like domain-containing protein 1", "CUB and ZP domain-containing protein 1", "" ], [ "A0A140LIA7-1", "Uncharacterized protein C20orf204 homolog", "", "" ], [ "P70419-1", "Polypeptide N-acetylgalactosaminyltransferase 3", "", "2.4.1.41" ], [ "Q9EP78-1", "Carbohydrate sulfotransferase 7", "", "2.8.2.-" ], [ "Q9EP78-1", "Carbohydrate sulfotransferase 7", "", "2.8.2.17" ], [ "Q9EP79-1", "Vomeronasal type-1 receptor 52", "", "" ], [ "Q3URK3-1", "Methylcytosine dioxygenase TET1", "", "1.14.11.n2" ], [ "Q9EP72-1", "ER membrane protein complex subunit 7", "", "" ], [ "Q9EP73-1", "Programmed cell death 1 ligand 1", "PD-L1", "" ], [ "Q9EP73-1", "Programmed cell death 1 ligand 1", "PDCD1 ligand 1", "" ], [ "Q9EP73-1", "Programmed cell death 1 ligand 1", "Programmed death ligand 1", "" ], [ "Q9EP71-1", "Ankycorbin", "", "" ], [ "Q9EP75-1", "Leukotriene-B4 omega-hydroxylase 3", "", "1.14.14.94" ], [ "Q3URK1-1", "Coiled-coil domain-containing protein 190", "", "" ], [ "P53702-1", "Cytochrome c-type heme lyase", "CCHL", "4.4.1.17" ], [ "Q8R349-1", "Cell division cycle protein 16 homolog", "", "" ], [ "Q8R344-1", "Coiled-coil domain-containing protein 12", "", "" ], [ "O08911-1", "Mitogen-activated protein kinase 12", "MAP kinase 12", "2.7.11.24" ], [ "O08911-1", "Mitogen-activated protein kinase 12", "MAPK 12", "2.7.11.24" ], [ "Q80WC9-1", "Beta-alanine-activating enzyme", "", "6.2.1.-" ], [ "O08912-1", "Polypeptide N-acetylgalactosaminyltransferase 1", "", "2.4.1.41" ], [ "O08915-1", "AH receptor-interacting protein", "AIP", "" ], [ "O08914-1", "Fatty-acid amide hydrolase 1", "", "3.5.1.99" ], [ "O08917-1", "Flotillin-1", "", "" ], [ "Q80WC3-1", "Trinucleotide repeat-containing gene 18 protein", "", "" ], [ "O08918-1", "Cyclin-G2", "", "" ], [ "Q80WC1-1", "Ubinuclein-2", "", "" ], [ "Q80WC7-1", "Arf-GAP domain and FG repeat-containing protein 2", "", "" ], [ "Q9JHY4-1", "WAP four-disulfide core domain protein 15B", "", "" ], [ "Q91ZK4-1", "Diencephalon/mesencephalon homeobox protein 1", "", "" ], [ "Q91ZK0-1", "Transcription factor AP-2-delta", "AP2-delta", "" ], [ "P19070-1", "Complement receptor type 2", "Cr2", "" ], [ "Q8BZM0-1", "Kelch-like protein 12", "", "" ], [ "Q8BZM1-1", "Glomulin", "", "" ], [ "Q4VC33-1", "E3 ubiquitin-protein transferase MAEA", "", "2.3.2.27" ], [ "Q66GT5-1", "Phosphatidylglycerophosphatase and protein-tyrosine phosphatase 1", "", "3.1.3.27" ], [ "P50429-1", "Arylsulfatase B", "ASB", "3.1.6.12" ], [ "Q8BTJ4-1", "Bis(5'-adenosyl)-triphosphatase enpp4", "", "3.6.1.29" ], [ "Q99LV7-1", "Phosphatidylinositol-glycan biosynthesis class X protein", "PIG-X", "" ], [ "Q4G5Y1-1", "Kelch domain-containing protein 2", "", "" ], [ "P50427-1", "Steryl-sulfatase", "", "3.1.6.2" ], [ "P59708-1", "Splicing factor 3B subunit 6", "", "" ], [ "Q9R1N9-1", "Collagen alpha-1(XIII) chain", "", "" ], [ "A2AT96-1", "Olfactory receptor", "", "" ], [ "Q3V3Q4-1", "Pyrin domain-containing protein 3", "", "" ], [ "Q7M729-1", "Sodium channel subunit beta-4", "", "" ], [ "Q3V3Q7-1", "Phosphofurin acidic cluster sorting protein 2", "PACS-2", "" ], [ "Q7M724-1", "Taste receptor type 2 member 106", "T2R106", "" ], [ "Q7M724-1", "Taste receptor type 2 member 106", "mT2R44", "" ] ] }, "readme": "Name\n - Mouse Protein Recommended Names (UniProtKB)\n\nVersion\n - 1.7.13\n\nCreated on\n - 2019-01-23T17:21:05.957692\n\nModified on\n - 2020-04-10T12:35:58.497780\n\nCreated by\n - Jeet Vora [jeetvora@gwu.edu], Rahi Navelkar [rsn13@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Xavier Holmes [xavierh@email.gwu.edu]\n\nAuthors\n - Maria Martin [martin@ebi.ac.uk], Preethi Vasudev [pvasudev@ebi.ac.uk]\n\nChecksum\n - \n\nUsability Domain\n - The Mouse Protein Recommended Names (UniProtKB) dataset contains UniProtKB recommended names for mouse [taxid:10090] proteins. The dataset is derived from 2019-09 UniProtKB release. If you use this dataset please provide proper attribution to EMBL-EBI-UniProtKB and GlyGen\n\nDescription Domain\n Keywords\n - protein recommended name\n - protein name\n - UniProtKB\n\n Pipeline Steps\n - Step-1: The script loads the UniProtKB recommended names for protein accessions from the triplestore containing triples from nt file and extracts the recommended names into csv dataset file\n\nExecution Domain\n Scripts - https://github.com/GW-HIVE/glygen-backend-integration/blob/master/pipeline/integrator/make-protein-dataset.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: uniprot-proteome-mus-musculus.nt\n URI: https://data.glygen.org/ln2wwwdata/source/uniprot-proteome-mus-musculus.nt\n Name: mouse_protein_idmapping.csv\n URI: https://data.glygen.org/ln2wwwdata/reviewed/mouse_protein_idmapping.csv\n Output Subdomain\n Name: mouse_protein_recnames.csv\n URI: http://data.glygen.org/ln2wwwdata/reviewed/mouse_protein_recnames.csv\n Name: mouse_protein_recnames.stat.csv\n URI: http://data.glygen.org/ln2wwwdata/reviewed/mouse_protein_recnames.stat.csv\n\nFields\n Name: \"recommended_name_short\"\n Description: \"Recommended short name of the protein in UniProtKB database\"\n Unique Values: \"5276\"\n Name: \"ec_name\"\n Description: \"Enzyme Commision name assigned to an enzyme by the Nomenclature Committee of the International Union of Biochemistry and Molecular Biology (IUBMB)\"\n Unique Values: \"1292\"\n Name: \"uniprotkb_canonical_ac\"\n Description: \"\"\n Unique Values: \"18253\"\n Name: \"recommended_name_full\"\n Description: \"Recommended full name of the protein in the UniProtKB database\"\n Unique Values: \"17045\"", "downloadurl": "/ln2data/releases/data/v-1.7.13/reviewed/mouse_protein_recnames.csv" }