{ "bcoid": "GLY_000022", "title": "Mouse Protein Information (NCBI RefSeq)", "description": "The Mouse Protein Information (NCBI RefSeq) dataset contains mouse [taxid:10090] protein information ...", "filename": "mouse_protein_info_refseq.csv", "filetype": "csv", "categories": { "species": "Mus musculus", "molecule": "Protein", "tags": "Protein Information", "file_type": "csv", "status": "Reviewed", "scope": "internal" }, "minitable": { "content": [ [ "P03888-1...", "NP_904328.1..." ], [ "P03893-1...", "NP_904329.1..." ] ], "headers": [ "uniprotkb_ca...", "p_refseq_ac_..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "uniprotkb_canonical_ac" }, { "type": "string", "label": "p_refseq_ac_best_match" }, { "type": "string", "label": "refseq_protein_name" }, { "type": "string", "label": "refseq_protein_length" }, { "type": "string", "label": "refseq_protein_summary" } ], [ "P03888-1", "NP_904328.1", "NADH dehydrogenase subunit 1", "318", "" ], [ "P03893-1", "NP_904329.1", "NADH dehydrogenase subunit 2", "345", "" ], [ "P00397-1", "NP_904330.1", "cytochrome c oxidase subunit I", "514", "" ], [ "P00405-1", "NP_904331.1", "cytochrome c oxidase subunit II", "227", "" ], [ "P03930-1", "NP_904332.1", "ATP synthase F0 subunit 8", "67", "" ], [ "P00848-1", "NP_904333.1", "ATP synthase F0 subunit 6", "226", "" ], [ "P00416-1", "NP_904334.1", "cytochrome c oxidase subunit III", "261", "" ], [ "P03899-1", "NP_904335.1", "NADH dehydrogenase subunit 3", "115", "" ], [ "P03903-1", "NP_904336.1", "NADH dehydrogenase subunit 4L", "98", "" ], [ "P03911-1", "NP_904337.1", "NADH dehydrogenase subunit 4", "459", "" ], [ "P03921-1", "NP_904338.1", "NADH dehydrogenase subunit 5", "607", "" ], [ "P03925-1", "NP_904339.1", "NADH dehydrogenase subunit 6", "172", "" ], [ "P00158-1", "NP_904340.1", "cytochrome b", "381", "" ], [ "P50704-1", "NP_031878.1", "alpha-defensin 6/12 precursor", "93", "" ], [ "Q6PG16-1", "NP_766093.1", "Holliday junction recognition protein", "591", "" ], [ "Q8BWG6-1", "NP_766364.1", "solute carrier family 22. member 29 isoform 1", "551", "" ], [ "H7BX78-1", "NP_001334104.1", "zinc finger protein 408 isoform 1", "710", "" ], [ "Q4G0C7-1", "NP_001334167.1", "oogenesin 4 isoform 1", "502", "" ], [ "Q7TNE6-1", "NP_001171009.1", "double homeobox B-like", "350", "" ], [ "B8JJZ4-1", "NP_001034328.2", "zinc finger protein 80", "753", "" ], [ "L7N219-1", "NP_001019877.2", "alpha takusan-like", "204", "" ], [ "Q91VB1-1", "NP_001019885.1", "mast cell protease 10 isoform 1 precursor", "246", "" ], [ "D3YY91-1", "NP_001074875.1", "leucine-rich repeat protein 1", "422", "" ], [ "Q9D9G7-1", "NP_082826.1", "trypsin X5 precursor", "251", "" ], [ "A6H6S0-1", "NP_082981.3", "probable E3 ubiquitin-protein ligase HERC3 isoform a", "1050", "" ], [ "Q3V118-1", "NP_001028719.1", "coiled-coil domain-containing protein 185", "621", "" ], [ "D3Z445-1", "NP_001333969.1", "zinc finger protein 707 isoform 2", "384", "" ], [ "Q810R0-1", "NP_963288.2", "Sycp3 like Y-linked", "222", "" ], [ "G5E8H5-1", "NP_954866.2", "transmembrane phosphatase with tensin homology", "664", "" ], [ "A0A087WRH0-1", "NP_001034320.3", "kruppel-related zinc finger protein-like", "451", "" ], [ "Q3UU43-1", "NP_598674.2", "chondroitin sulfate glucuronyltransferase precursor", "768", "" ], [ "Q78F42-1", "NP_848847.3", "zinc finger protein 324A isoform 1", "583", "" ], [ "Q3U687-1", "NP_444447.1", "interferon induced protein with tetratricopeptide repeats 1B like 2", "466", "" ], [ "Q9EPS4-1", "NP_109660.1", "vomeronasal 1 receptor 172", "313", "" ], [ "Q8C084-1", "NP_001020783.1", "sorting nexin-22", "192", "" ], [ "B2RQG2-1", "NP_001074549.1", "PHD finger protein 3", "2025", "" ], [ "D3YYY8-1", "NP_001074764.1", "rho guanine nucleotide exchange factor 26", "869", "" ], [ "F8VPK0-1", "NP_001074821.1", "tetratricopeptide repeat protein 37", "1563", "" ], [ "A2A799-1", "NP_659544.2", "uncharacterized protein LOC112422", "407", "" ], [ "B1ARL3-1", "NP_035132.2", "olfactory receptor 59", "323", "Olfactory receptors interact with odorant molecules in the nose, to initiate a neuronal response that triggers the perception of a smell. The olfactory receptor proteins are members of a large family of G-protein-coupled receptors (GPCR) arising from single coding-exon genes. Olfactory receptors share a 7-transmembrane domain structure with many neurotransmitter and hormone receptors and are responsible for the recognition and G protein-mediated transduction of odorant signals. The olfactory receptor gene family is the largest in the genome. The nomenclature assigned to the olfactory receptor genes and proteins for this organism is independent of other organisms. [provided by RefSeq, Jul 2008]. " ], [ "A2A6P4-1", "NP_613064.2", "protein FAM104A isoform 2", "185", "" ], [ "A0A0G2JDV3-1", "NP_919317.2", "guanylate binding protein 6", "611", "" ], [ "Q9D5T2-1", "NP_081874.1", "ankyrin repeat domain-containing protein 26 isoform 1", "438", "" ], [ "B2RXB0-1", "NP_001094956.1", "protein FAM71F2", "297", "" ], [ "Q9Z0I7-1", "NP_035537.1", "schlafen 1", "337", "" ], [ "Q3TIX6-1", "NP_001028561.2", "far upstream element-binding protein 3 isoform a", "575", "" ], [ "E9Q512-1", "NP_082722.1", "thyroid receptor-interacting protein 11", "1976", "" ], [ "E9Q3A7-1", "NP_001074855.1", "cadherin-19 precursor", "770", "" ], [ "Q8CIH9-1", "NP_742158.1", "amidophosphoribosyltransferase", "517", "" ], [ "Q8JZK6-1", "NP_001171022.1", "putative tripartite motif-containing protein 61", "461", "" ], [ "A7UAK5-1", "NP_001171224.1", "6-phosphofructo-2-kinase/fructose-2, 6-bisphosphatase 3 isoform 2", "555", "" ], [ "Q9CZP3-1", "NP_082574.1", "zinc finger protein 655 isoform a", "541", "" ], [ "C3VD30-1", "NP_001153165.1", "ZAR1-like protein", "291", "" ], [ "E9Q9B7-1", "NP_001074847.1", "kinase D-interacting substrate of 220 kDa", "1793", "" ], [ "Q9D2H1-1", "NP_084328.1", "cytochrome c oxidase subunit VIIb2", "82", "" ], [ "Q8BFX2-1", "NP_848837.3", "zinc finger protein 438", "798", "" ], [ "J3QNN4-1", "NP_001241882.1", "ankyrin repeat domain-containing protein 66", "192", "" ], [ "Q8C0Q5-1", "NP_766506.4", "zinc finger protein 317", "607", "" ], [ "E9PX47-1", "NP_064685.2", "olfactory receptor 544", "334", "Olfactory receptors interact with odorant molecules in the nose, to initiate a neuronal response that triggers the perception of a smell. The olfactory receptor proteins are members of a large family of G-protein-coupled receptors (GPCR) arising from single coding-exon genes. Olfactory receptors share a 7-transmembrane domain structure with many neurotransmitter and hormone receptors and are responsible for the recognition and G protein-mediated transduction of odorant signals. The olfactory receptor gene family is the largest in the genome. The nomenclature assigned to the olfactory receptor genes and proteins for this organism is independent of other organisms. [provided by RefSeq, Jul 2008]. " ], [ "Q6QX36-1", "NP_796057.1", "RIKEN cDNA B430306N03 precursor", "289", "" ], [ "A2ATK9-1", "NP_001074630.1", "protein FAM171A1 isoform 1 precursor", "892", "" ], [ "Q8BHK4-1", "NP_796333.3", "zinc finger protein 799 isoform 1", "648", "" ], [ "A0A0B4J1G4-1", "NP_665836.2", "interleukin-17D precursor", "205", "" ], [ "Q8CFE8-1", "NP_780610.2", "F-box and WD-40 domain protein 17", "466", "" ], [ "Q6PFE1-1", "NP_780383.2", "kelch-like protein 5 isoform 1", "708", "" ], [ "Q2MDF7-1", "NP_001034787.1", "reproductive homeobox 4G", "205", "" ], [ "E9Q7N4-1", "NP_808582.3", "diacylglycerol kinase kappa", "1118", "" ], [ "G3X964-1", "NP_001004362.2", "uncharacterized protein LOC72128 isoform 1", "669", "" ], [ "D3YVV3-1", "NP_001177300.1", "ankyrin repeat domain-containing protein 29 isoform 1", "309", "" ], [ "Q6DIC6-1", "NP_001002272.1", "trophinin isoform 1", "2087", "" ], [ "B1AZQ8-1", "NP_001091449.1", "uncharacterized protein LOC100040937 precursor", "209", "" ], [ "A0A2I3BR92-1", "NP_001276660.1", "proto-oncogene DBL isoform 1", "1111", "" ], [ "D3Z1A5-1", "NP_001074489.1", "A disintegrin and metalloproteinase with thrombospondin motifs 6 precursor", "1117", "" ], [ "G3X9F6-1", "NP_919325.2", "SH3 domain and tetratricopeptide repeat-containing protein 1", "1346", "" ], [ "L7N1Y3-1", "NP_001098724.1", "oogenesin like isoform 1", "520", "" ], [ "Q3V0X2-1", "NP_001028971.1", "claudin 34B4", "211", "" ], [ "Q9ER67-1", "NP_001186175.1", "melanoma-associated antigen D2", "616", "" ], [ "Q9D5J5-1", "NP_082947.1", "protein FAM122C", "180", "" ], [ "Q8C879-1", "NP_109638.2", "zinc finger protein 202 isoform 1", "641", "" ], [ "A2AE21-1", "NP_899008.2", "zinc finger protein 300 isoform 2", "645", "" ], [ "Q80UI7-1", "NP_955015.1", "C-type lectin domain family 4, member a1", "245", "" ], [ "J3QPC1-1", "NP_001243238.1", "uncharacterized protein LOC381043 precursor", "141", "" ], [ "G3X952-1", "NP_001074798.1", "zinc finger protein with KRAB and SCAN domains 2", "960", "" ], [ "Q8CB76-1", "NP_084415.1", "zinc finger protein 449 isoform 1", "518", "" ] ] }, "readme": "Name\n - Mouse Protein Information (NCBI RefSeq)\n\nVersion\n - 1.7.13\n\nCreated on\n - 2019-01-23T17:21:05.888176\n\nModified on\n - 2020-04-10T12:31:52.568731\n\nCreated by\n - Jeet Vora [jeetvora@gwu.edu], Rahi Navelkar [rsn13@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Xavier Holmes [xavierh@email.gwu.edu]\n\nAuthors\n - \n\nChecksum\n - \n\nUsability Domain\n - The Mouse Protein Information (NCBI RefSeq) dataset contains mouse [taxid:10090] protein information such as protein accession, name, length and protein function summary from NCBI RefSeq database. The dataset is derived from NCBI RefSeq Release 96, September 9, 2019. If you use this dataset please provide proper attribution to NCBI RefSeq and GlyGen\n\nDescription Domain\n Keywords\n - protein information\n - protein length\n - protein summary\n - NCBI RefSeq\n\n Pipeline Steps\n - Step-1: The script parses the NCBI RefSeq gpff files to extract the accession, length, protein summary and then maps the NCBI RefSeq accesion to the UniProtKB Canonical accessions\n\nExecution Domain\n Scripts - https://github.com/GW-HIVE/glygen-backend-integration/blob/master/pipeline/integrator/make-protein-dataset.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: refseq_protein_all_10090.gpff\n URI: https://data.glygen.org/ln2wwwdata/source/refseq_protein_all_10090.gpff\n Name: mouse_protein_xref_refseq.csv\n URI: https://data.glygen.org/ln2wwwdata/reviewed/mouse_protein_xref_refseq.csv\n Output Subdomain\n Name: mouse_protein_info_refseq.csv\n URI: http://data.glygen.org/ln2wwwdata/reviewed/mouse_protein_info_refseq.csv\n Name: mouse_protein_info_refseq.stat.csv\n URI: http://data.glygen.org/ln2wwwdata/reviewed/mouse_protein_info_refseq.stat.csv\n\nFields\n Name: \"refseq_protein_summary\"\n Description: \"Function of the protein in NCBI RefSeq database\"\n Unique Values: \"1271\"\n Name: \"uniprotkb_canonical_ac\"\n Description: \"\"\n Unique Values: \"19246\"\n Name: \"p_refseq_ac_best_match\"\n Description: \"Best match NCBI RefSeq protein accession to UniProtKB canonical accession\"\n Unique Values: \"19246\"\n Name: \"refseq_protein_name\"\n Description: \"Name of the protein in NCBI RefSeq database\"\n Unique Values: \"19134\"\n Name: \"refseq_protein_length\"\n Description: \"Length of the protein in NCBI RefSeq database\"\n Unique Values: \"1969\"", "downloadurl": "/ln2data/releases/data/v-1.7.13/reviewed/mouse_protein_info_refseq.csv" }