{ "bcoid": "GLY_000497", "title": "N-linked Byonic Glycan [Human]", "description": "The dataset provides the byonic format of n-linked human glycans (identified by GlyTouCan Ac.).The listed ...", "filename": "glycan_type_n_linked_byonic.csv", "filetype": "csv", "categories": { "molecule": "Glycan", "tags": "Byonic", "status": "Reviewed", "file_type": "csv", "scope": "internal" }, "minitable": { "content": [ [ "G28681TP...", "HexNAc(2)Hex..." ], [ "G20956ZV...", "HexNAc(2)Hex..." ] ], "headers": [ "glytoucan_ac...", "byonic..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "glytoucan_ac" }, { "type": "string", "label": "byonic" } ], [ "G28681TP", "HexNAc(2)Hex(3) % 892.317216" ], [ "G20956ZV", "HexNAc(2)Hex(3)dHex(1) % 1038.375125" ], [ "G92050GC", "HexNAc(2)Hex(4) % 1054.370039" ], [ "G06850XD", "HexNAc(3)Hex(3) % 1095.396588" ], [ "G21726WW", "HexNAc(2)Hex(3)dHex(2) % 1184.433033" ], [ "G82364UA", "HexNAc(2)Hex(4)dHex(1) % 1200.427948" ], [ "G02815KT", "HexNAc(2)Hex(5) % 1216.422863" ], [ "G80475RE", "HexNAc(3)Hex(3)dHex(1) % 1241.454497" ], [ "G05428EU", "HexNAc(3)Hex(4) % 1257.449412" ], [ "G35029YA", "HexNAc(4)Hex(3) % 1298.475961" ], [ "G16407EV", "HexNAc(2)Hex(5)dHex(1) % 1362.480772" ], [ "G67486RJ", "HexNAc(4)Hex(3)Sulpho(1) % 1378.432776" ], [ "G41247ZX", "HexNAc(2)Hex(6) % 1378.475686" ], [ "G28997IA", "HexNAc(3)Hex(3)dHex(2) % 1387.512406" ], [ "G10339FR", "HexNAc(3)Hex(4)dHex(1) % 1403.507321" ], [ "G39446WN", "HexNAc(3)Hex(5) % 1419.502235" ], [ "G25987BV", "HexNAc(4)Hex(3)dHex(1) % 1444.533870" ], [ "G55070DG", "HexNAc(4)Hex(4) % 1460.528784" ], [ "G49955PK", "HexNAc(5)Hex(3) % 1501.555334" ], [ "G54168YD", "HexNAc(4)Hex(3)dHex(1)Sulpho(1) % 1524.490684" ], [ "G02860WV", "HexNAc(2)Hex(6)dHex(1) % 1524.533595" ], [ "G92119WG", "HexNAc(4)Hex(4)Sulpho(1) % 1540.485599" ], [ "G31852PQ", "HexNAc(2)Hex(7) % 1540.528510" ], [ "G42859ED", "HexNAc(3)Hex(4)NeuAc(1) % 1548.544828" ], [ "G92597CK", "HexNAc(3)Hex(4)dHex(2) % 1549.565230" ], [ "G15486FH", "HexNAc(3)Hex(5)dHex(1) % 1565.560144" ], [ "G63273GB", "HexNAc(5)Hex(3)Sulpho(1) % 1581.512148" ], [ "G28541PG", "HexNAc(3)Hex(6) % 1581.555059" ], [ "G03751IZ", "HexNAc(4)Hex(3)NeuAc(1) % 1589.571378" ], [ "G61855PQ", "HexNAc(4)Hex(3)dHex(2) % 1590.591779" ], [ "G59937CP", "HexNAc(4)Hex(4)dHex(1) % 1606.586693" ], [ "G10486CT", "HexNAc(4)Hex(5) % 1622.581608" ], [ "G88725PI", "HexNAc(5)Hex(3)dHex(1) % 1647.613242" ], [ "G15205QB", "HexNAc(3)Hex(6)Phospho(1) % 1661.521390" ], [ "G65681LR", "HexNAc(5)Hex(4) % 1663.608157" ], [ "G86270PX", "HexNAc(4)Hex(4)dHex(1)Sulpho(1) % 1686.543508" ], [ "G14191MJ", "HexNAc(2)Hex(7)dHex(1) % 1686.586419" ], [ "G72791KH", "HexNAc(3)Hex(4)dHex(1)NeuAc(1) % 1694.602737" ], [ "G03930BU", "HexNAc(3)Hex(4)dHex(3) % 1695.623138" ], [ "G62765YT", "HexNAc(2)Hex(8) % 1702.581333" ], [ "G23280PX", "HexNAc(6)Hex(3) % 1704.634706" ], [ "G37399XV", "HexNAc(3)Hex(5)NeuAc(1) % 1710.597652" ], [ "G27622TD", "HexNAc(3)Hex(5)dHex(2) % 1711.618053" ], [ "G69121UK", "HexNAc(5)Hex(3)dHex(1)Sulpho(1) % 1727.570057" ], [ "G03574QJ", "HexNAc(3)Hex(6)dHex(1) % 1727.612968" ], [ "G36923NX", "HexNAc(4)Hex(3)dHex(1)NeuAc(1) % 1735.629286" ], [ "G39411LN", "HexNAc(5)Hex(4)Sulpho(1) % 1743.564972" ], [ "G13144LI", "HexNAc(3)Hex(7) % 1743.607882" ], [ "G45504EY", "HexNAc(4)Hex(4)NeuAc(1) % 1751.624201" ], [ "G50073PQ", "HexNAc(4)Hex(4)dHex(2) % 1752.644602" ], [ "G83555HU", "HexNAc(4)Hex(5)dHex(1) % 1768.639517" ], [ "G89430VM", "HexNAc(6)Hex(3)Sulpho(1) % 1784.591521" ], [ "G02886BB", "HexNAc(4)Hex(6) % 1784.634431" ], [ "G68318VE", "HexNAc(5)Hex(4)dHex(1) % 1809.666066" ], [ "G44957ZL", "HexNAc(5)Hex(5) % 1825.660981" ], [ "G63236GA", "HexNAc(4)Hex(5)dHex(1)Sulpho(1) % 1848.596331" ], [ "G55382TU", "HexNAc(6)Hex(3)dHex(1) % 1850.692615" ], [ "G67324HN", "HexNAc(3)Hex(5)dHex(1)NeuAc(1) % 1856.655561" ], [ "G06231AO", "HexNAc(3)Hex(5)dHex(3) % 1857.675962" ], [ "G42817NX", "HexNAc(6)Hex(3)Sulpho(2) % 1864.548335" ], [ "G80920RR", "HexNAc(2)Hex(9) % 1864.634157" ], [ "G25079LO", "HexNAc(6)Hex(4) % 1866.687530" ], [ "G01650EU", "HexNAc(3)Hex(6)NeuAc(1) % 1872.650475" ], [ "G50372IH", "HexNAc(3)Hex(6)dHex(2) % 1873.670877" ], [ "G46503DX", "HexNAc(4)Hex(3)NeuAc(2) % 1880.666794" ], [ "G73943YH", "HexNAc(5)Hex(4)dHex(1)Sulpho(1) % 1889.622880" ], [ "G40959OV", "HexNAc(3)Hex(7)dHex(1) % 1889.665791" ], [ "G54600FO", "HexNAc(4)Hex(4)dHex(1)NeuAc(1) % 1897.682110" ], [ "G73430PD", "HexNAc(7)Hex(3) % 1907.714079" ], [ "G59626AS", "HexNAc(4)Hex(5)NeuAc(1) % 1913.677025" ], [ "G60923RB", "HexNAc(4)Hex(5)dHex(2) % 1914.697426" ], [ "G53874PO", "HexNAc(4)Hex(5)dHex(1)Sulpho(2) % 1928.553146" ], [ "G11145KS", "HexNAc(6)Hex(3)dHex(1)Sulpho(1) % 1930.649430" ], [ "G09197ZW", "HexNAc(4)Hex(6)dHex(1) % 1930.692340" ], [ "G62792OG", "HexNAc(5)Hex(3)dHex(1)NeuAc(1) % 1938.708659" ], [ "G05114YK", "HexNAc(4)Hex(7) % 1946.687255" ], [ "G34189JE", "HexNAc(5)Hex(4)NeuAc(1) % 1954.703574" ], [ "G19379ID", "HexNAc(5)Hex(4)dHex(2) % 1955.723975" ], [ "G62273EM", "HexNAc(5)Hex(4)dHex(1)Sulpho(2) % 1969.579695" ], [ "G85740DB", "HexNAc(5)Hex(5)dHex(1) % 1971.718889" ], [ "G78923UG", "HexNAc(3)Hex(8)Phospho(1) % 1985.627037" ], [ "G44830UC", "HexNAc(5)Hex(6) % 1987.713804" ], [ "G61261ID", "HexNAc(4)Hex(5)NeuAc(1)Sulpho(1) % 1993.633839" ], [ "G63276XU", "HexNAc(6)Hex(3)NeuAc(1) % 1995.730123" ] ] }, "readme": "Name\n - N-linked Byonic Glycan [Human]\n\nVersion\n - 1.7.13\n\nCreated on\n - 2020-05-12T18:50:02.969226\n\nModified on\n - 2020-05-27T09:56:36.844075\n\nCreated by\n - Rahi Navelkar [rsn13@gwu.edu], Jeet Vora [jeetvora@gwu.edu], Robel Kahsay [rykahsay@gwu.edu]\n\nAuthors\n - Nathan Edwards [nje5@georgetown.edu]\n\nChecksum\n - \n\nUsability Domain\n - The dataset provides the byonic format of n-linked human glycans (identified by GlyTouCan Ac.).The listed GlyTouCan Accessions are derived from the GlyTouCan accession master list (https://data.glygen.org/GLYDS000281). Source database: https://glytoucan.org/\n\nDescription Domain\n Keywords\n - Glycan\n - GlyTouCan Accession\n - Byonic\n\n Pipeline Steps\n - Step-1: The input file was downloaded from the author and a python script is used to extract the data for the GlyTouCan accessions based on the acession master list.\n\nExecution Domain\n Scripts - https://github.com/GW-HIVE/glygen-backend-integration/blob/master/pipeline/integrator/make-species-agnostic-dataset.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: type_n_linked_byonic.tsv\n URI: https://data.glygen.org/ln2data/releases/data/v-1.7.13/source/type_n_linked_byonic.tsv\n Output Subdomain\n Name: glycan_type_n_linked_byonic.csv\n URI: http://data.glygen.org/ln2data/releases/data/v-1.7.13/reviewed/glycan_type_n_linked_byonic.csv\n Name: glycan_type_n_linked_byonic.stat.csv\n URI: http://data.glygen.org/ln2data/releases/data/v-1.7.13/reviewed/glycan_type_n_linked_byonic.stat.csv\n\nFields\n Name: \"glytoucan_ac\"\n Description: \"Unique accession assigned to the registered glycan structure in GlyTouCan database\"\n Unique Values: \"289\"\n Name: \"byonic\"\n Description: \"byonic format of the glycan description\"\n Unique Values: \"289\"", "downloadurl": "/ln2data/releases/data/v-1.7.13/reviewed/glycan_type_n_linked_byonic.csv" }