{ "bcoid": "GLY_000484", "title": "Mouse Proteoform Citations (GlyConnect)", "description": "The Mouse Proteoform Citations (GlyConnect) dataset provides citation details corresponding to the PubMed ...", "filename": "mouse_proteoform_citations_glyconnect.csv", "filetype": "csv", "categories": { "species": "Mus musculus", "molecule": "Proteoform", "tags": "Protein Citations", "file_type": "csv", "status": "Reviewed", "scope": "internal" }, "minitable": { "content": [ [ "P01869-1...", "G58667NI..." ], [ "P01869-1...", "G46687AB..." ] ], "headers": [ "uniprotkb_ca...", "glytoucan_ac..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "uniprotkb_canonical_ac" }, { "type": "string", "label": "glytoucan_ac" }, { "type": "string", "label": "title" }, { "type": "string", "label": "journal_name" }, { "type": "string", "label": "publication_date" }, { "type": "string", "label": "authors" }, { "type": "string", "label": "xref_key" }, { 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determination of murine fetal antigen 1 (mFA1)--the circulating gene product of the delta-like protein (dlk), preadipocyte factor 1 (Pref-1) and stromal-cell-derived protein 1 (SCP-1) cDNAs.", "European journal of biochemistry", "1997 Mar 1", "Krogh TN, Bachmann E, Teisner B, Skjodt K, Hojrup P", "protein_xref_pubmed", "9118998", "protein_xref_glyconnect", "153" ], [ "Q09163-1", "G22310AV", "Glycosylation analysis and protein structure determination of murine fetal antigen 1 (mFA1)--the circulating gene product of the delta-like protein (dlk), preadipocyte factor 1 (Pref-1) and stromal-cell-derived protein 1 (SCP-1) cDNAs.", "European journal of biochemistry", "1997 Mar 1", "Krogh TN, Bachmann E, Teisner B, Skjodt K, Hojrup P", "protein_xref_pubmed", "9118998", "protein_xref_glyconnect", "153" ], [ "Q09163-1", "G58229BR", "Glycosylation analysis and protein structure determination of murine fetal antigen 1 (mFA1)--the circulating gene product of the delta-like protein (dlk), 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"G15569GG", "Sialic acid-focused quantitative mouse serum glycoproteomics by multiple reaction monitoring assay.", "Molecular & cellular proteomics : MCP", "2010 Nov", "Kurogochi M, Matsushista T, Amano M, Furukawa J, Shinohara Y, Aoshima M, Nishimura S", "protein_xref_pubmed", "20571061", "protein_xref_glyconnect", "696" ], [ "Q921I1-1", "G39397SW", "Sialic acid-focused quantitative mouse serum glycoproteomics by multiple reaction monitoring assay.", "Molecular & cellular proteomics : MCP", "2010 Nov", "Kurogochi M, Matsushista T, Amano M, Furukawa J, Shinohara Y, Aoshima M, Nishimura S", "protein_xref_pubmed", "20571061", "protein_xref_glyconnect", "556" ], [ "Q921I1-1", "G15488CF", "Sialic acid-focused quantitative mouse serum glycoproteomics by multiple reaction monitoring assay.", "Molecular & cellular proteomics : MCP", "2010 Nov", "Kurogochi M, Matsushista T, Amano M, Furukawa J, Shinohara Y, Aoshima M, Nishimura S", "protein_xref_pubmed", "20571061", "protein_xref_glyconnect", "556" ], [ "Q61704-1", "G39397SW", "Sialic acid-focused quantitative mouse serum glycoproteomics by multiple reaction monitoring assay.", "Molecular & cellular proteomics : MCP", "2010 Nov", "Kurogochi M, Matsushista T, Amano M, Furukawa J, Shinohara Y, Aoshima M, Nishimura S", "protein_xref_pubmed", "20571061", "protein_xref_glyconnect", "776" ], [ "Q61704-1", "G15488CF", "Sialic acid-focused quantitative mouse serum glycoproteomics by multiple reaction monitoring assay.", "Molecular & cellular proteomics : MCP", "2010 Nov", "Kurogochi M, Matsushista T, Amano M, Furukawa J, Shinohara Y, Aoshima M, Nishimura S", "protein_xref_pubmed", "20571061", "protein_xref_glyconnect", "776" ], [ "Q06890-1", "G08673AT", "Sialic acid-focused quantitative mouse serum glycoproteomics by multiple reaction monitoring assay.", "Molecular & cellular proteomics : MCP", "2010 Nov", "Kurogochi M, Matsushista T, Amano M, Furukawa J, Shinohara Y, Aoshima M, Nishimura S", "protein_xref_pubmed", "20571061", "protein_xref_glyconnect", "761" ], [ "Q06890-1", "G31966KA", "Sialic acid-focused quantitative mouse serum glycoproteomics by multiple reaction monitoring assay.", "Molecular & cellular proteomics : MCP", "2010 Nov", "Kurogochi M, Matsushista T, Amano M, Furukawa J, Shinohara Y, Aoshima M, Nishimura S", "protein_xref_pubmed", "20571061", "protein_xref_glyconnect", "761" ], [ "P29699-1", "G39397SW", "Sialic acid-focused quantitative mouse serum glycoproteomics by multiple reaction monitoring assay.", "Molecular & cellular proteomics : MCP", "2010 Nov", "Kurogochi M, Matsushista T, Amano M, Furukawa J, Shinohara Y, Aoshima M, Nishimura S", "protein_xref_pubmed", "20571061", "protein_xref_glyconnect", "729" ], [ "P29699-1", "G15488CF", "Sialic acid-focused quantitative mouse serum glycoproteomics by multiple reaction monitoring assay.", "Molecular & cellular proteomics : MCP", "2010 Nov", "Kurogochi M, Matsushista T, Amano M, Furukawa J, Shinohara Y, Aoshima M, Nishimura S", "protein_xref_pubmed", "20571061", "protein_xref_glyconnect", "729" ], [ "Q9WU62-1", "G19359HX", "Sialic acid-focused quantitative mouse serum glycoproteomics by multiple reaction monitoring assay.", "Molecular & cellular proteomics : MCP", "2010 Nov", "Kurogochi M, Matsushista T, Amano M, Furukawa J, Shinohara Y, Aoshima M, Nishimura S", "protein_xref_pubmed", "20571061", "protein_xref_glyconnect", "806" ], [ "Q61838-1", "G67499DD", "Sialic acid-focused quantitative mouse serum glycoproteomics by multiple reaction monitoring assay.", "Molecular & cellular proteomics : MCP", "2010 Nov", "Kurogochi M, Matsushista T, Amano M, Furukawa J, Shinohara Y, Aoshima M, Nishimura S", "protein_xref_pubmed", "20571061", "protein_xref_glyconnect", "675" ], [ "Q61838-1", "G22274VA", "Sialic acid-focused quantitative mouse serum glycoproteomics by multiple reaction monitoring assay.", "Molecular & cellular proteomics : MCP", "2010 Nov", "Kurogochi M, Matsushista T, Amano M, Furukawa J, Shinohara Y, Aoshima M, Nishimura S", "protein_xref_pubmed", "20571061", "protein_xref_glyconnect", "675" ], [ "Q61838-1", "G51444LH", "Sialic acid-focused quantitative mouse serum glycoproteomics by multiple reaction monitoring assay.", "Molecular & cellular proteomics : MCP", "2010 Nov", "Kurogochi M, Matsushista T, Amano M, Furukawa J, Shinohara Y, Aoshima M, Nishimura S", "protein_xref_pubmed", "20571061", "protein_xref_glyconnect", "675" ], [ "Q61838-1", "G46842SD", "Sialic acid-focused quantitative mouse serum glycoproteomics by multiple reaction monitoring assay.", "Molecular & cellular proteomics : MCP", "2010 Nov", "Kurogochi M, Matsushista T, Amano M, Furukawa J, Shinohara Y, Aoshima M, Nishimura S", "protein_xref_pubmed", "20571061", "protein_xref_glyconnect", "675" ], [ "Q60590-1", "G40608DF", "Sialic acid-focused quantitative mouse serum glycoproteomics by multiple reaction monitoring assay.", "Molecular & cellular proteomics : MCP", "2010 Nov", "Kurogochi M, Matsushista T, Amano M, Furukawa J, Shinohara Y, Aoshima M, Nishimura S", "protein_xref_pubmed", "20571061", "protein_xref_glyconnect", "798" ], [ "Q60590-1", "G15569GG", "Sialic acid-focused quantitative mouse serum glycoproteomics by multiple reaction monitoring assay.", "Molecular & cellular proteomics : MCP", "2010 Nov", "Kurogochi M, Matsushista T, Amano M, Furukawa J, Shinohara Y, Aoshima M, Nishimura S", "protein_xref_pubmed", "20571061", "protein_xref_glyconnect", "798" ], [ "Q921I1-1", "G80269JV", "Sialic acid-focused quantitative mouse serum glycoproteomics by multiple reaction monitoring assay.", "Molecular & cellular proteomics : MCP", "2010 Nov", "Kurogochi M, Matsushista T, Amano M, Furukawa J, Shinohara Y, Aoshima M, Nishimura S", "protein_xref_pubmed", "20571061", "protein_xref_glyconnect", "556" ], [ "Q61147-1", "G39397SW", "Sialic acid-focused quantitative mouse serum glycoproteomics by multiple reaction monitoring assay.", "Molecular & cellular proteomics : MCP", "2010 Nov", "Kurogochi M, Matsushista T, Amano M, Furukawa J, Shinohara Y, Aoshima M, Nishimura S", "protein_xref_pubmed", "20571061", "protein_xref_glyconnect", "689" ], [ "Q61147-1", "G15488CF", "Sialic acid-focused quantitative mouse serum glycoproteomics by multiple reaction monitoring assay.", "Molecular & cellular proteomics : MCP", "2010 Nov", "Kurogochi M, Matsushista T, Amano M, Furukawa J, Shinohara Y, Aoshima M, Nishimura S", "protein_xref_pubmed", "20571061", "protein_xref_glyconnect", "689" ], [ "P01592-1", "G40608DF", "Sialic acid-focused quantitative mouse serum glycoproteomics by multiple reaction monitoring assay.", "Molecular & cellular proteomics : MCP", "2010 Nov", "Kurogochi M, Matsushista T, Amano M, Furukawa J, Shinohara Y, Aoshima M, Nishimura S", "protein_xref_pubmed", "20571061", "protein_xref_glyconnect", "694" ], [ "P01592-1", "G15569GG", "Sialic acid-focused quantitative mouse serum glycoproteomics by multiple reaction monitoring assay.", "Molecular & cellular proteomics : MCP", "2010 Nov", "Kurogochi M, Matsushista T, Amano M, Furukawa J, Shinohara Y, Aoshima M, Nishimura S", "protein_xref_pubmed", "20571061", "protein_xref_glyconnect", "694" ], [ "P08607-1", "G40608DF", "Sialic acid-focused quantitative mouse serum glycoproteomics by multiple reaction monitoring assay.", "Molecular & cellular proteomics : MCP", "2010 Nov", "Kurogochi M, Matsushista T, Amano M, Furukawa J, Shinohara Y, Aoshima M, Nishimura S", "protein_xref_pubmed", "20571061", "protein_xref_glyconnect", "814" ] ] }, "readme": "Name\n - Mouse Proteoform Citations (GlyConnect)\n\nVersion\n - 1.7.13\n\nCreated on\n - 2020-04-28T11:04:45.973121\n\nModified on\n - 2020-04-28T11:06:57.082293\n\nCreated by\n - Rahi Navelkar [rsn13@gwu.edu], Jeet Vora [jeetvora@gwu.edu], Robel Kahsay [rykahsay@gwu.edu]\n\nAuthors\n - Frederique Lisacek [frederique.lisacek@sib.swiss], Julien Mariethoz [julien.mariethoz@sib.swiss]\n\nChecksum\n - \n\nUsability Domain\n - The Mouse Proteoform Citations (GlyConnect) dataset provides citation details corresponding to the PubMed ID (PMID) from file https://data.glygen.org/GLYDS000329. The script accesses the NCBI ENTREZ infrastructure to retrieve the publication information of the given PMID. The dataset is contributed by GlyGen and processed by GlyGen. If you use this dataset please provide proper attribution to GlyConnect (https://glyconnect.expasy.org/).\n\nDescription Domain\n Keywords\n - PMID\n - journal\n - citations\n - authors\n - GlyConnect\n - PubMed\n\n Pipeline Steps\n - Step-1: The script parses the input file for PMIDs and accesses the NCBI Entrez infrastructure to download the publication information of the corresponding PMIDs\n\nExecution Domain\n Scripts - https://github.com/GW-HIVE/glygen-backend-integration/blob/master/pipeline/integrator/make-proteoform-dataset.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: mouse_proteoform_glycosylation_sites_glyconnect.csv\n URI: https://data.glygen.org/ln2data/releases/data/v-1.7.13/reviewed/mouse_proteoform_glycosylation_sites_glyconnect.csv\n Output Subdomain\n Name: mouse_proteoform_citations_glyconnect.csv\n URI: http://data.glygen.org/ln2data/releases/data/v-1.7.13/reviewed/mouse_proteoform_citations_glyconnect.csv\n Name: mouse_proteoform_citations_glyconnect.stat.csv\n URI: http://data.glygen.org/ln2data/releases/data/v-1.7.13/reviewed/mouse_proteoform_citations_glyconnect.stat.csv\n\nFields\n Name: \"uniprotkb_canonical_ac\"\n Description: \"\"\n Unique Values: \"724\"\n Name: \"xref_id\"\n Description: \"ID of the X-ref\"\n Unique Values: \"7\"\n Name: \"title\"\n Description: \"Title of the published article in the journal\"\n Unique Values: \"7\"\n Name: \"src_xref_key\"\n Description: \"Source Xref key\"\n Unique Values: \"1\"\n Name: \"src_xref_id\"\n Description: \"Source X-ref ID\"\n Unique Values: \"730\"\n Name: \"journal_name\"\n Description: \"The name of the journal in which the article is published\"\n Unique Values: \"5\"\n Name: \"authors\"\n Description: \"NA\"\n Unique Values: \"7\"\n Name: \"publication_date\"\n Description: \"Contains the full date on which the issue of the journal was published. Sourced from MEDLINE/PubMed data element(fields) description.\"\n Unique Values: \"7\"\n Name: \"glytoucan_ac\"\n Description: \"Unique accession assigned to the registered glycan structure in GlyTouCan database\"\n Unique Values: \"160\"\n Name: \"xref_key\"\n Description: \"Source key associated to the xref_id\"\n Unique Values: \"1\"", "downloadurl": "/ln2data/releases/data/v-1.7.13/reviewed/mouse_proteoform_citations_glyconnect.csv" }