{
    "bcoid": "GLY_000475",
    "title": "SARS-CoV2 Phosphorylation Sites (UniProtKB)",
    "description": "The SARS coronavirus (SARS-CoV-2 or 2019-nCoV) Phosphorylation Sites (UniProtKB) dataset contains sarscov2 ...",
    "filename": "sarscov2_proteoform_phosphorylation_sites_uniprotkb.csv",
    "filetype": "csv",
    "categories": {
        "species": "SARS coronavirus (SARS-CoV-2 or 2019-nCoV)",
        "molecule": "Proteoform",
        "tags": "Phosphorylation Sites",
        "file_type": "csv",
        "status": "Reviewed",
        "scope": "internal"
    },
    "minitable": {
        "content": [
            [
                "P0DTC9-1...",
                "176..."
            ]
        ],
        "headers": [
            "uniprotkb_ca...",
            "phosphorylat..."
        ],
        "colwidth": [
            "40%",
            "20%"
        ]
    },
    "sampledata": {
        "type": "table",
        "data": [
            [
                {
                    "type": "string",
                    "label": "uniprotkb_canonical_ac"
                },
                {
                    "type": "string",
                    "label": "phosphorylation_site_uniprotkb"
                },
                {
                    "type": "string",
                    "label": "amino_acid"
                },
                {
                    "type": "string",
                    "label": "kinase_uniprotkb_canonical_ac"
                },
                {
                    "type": "string",
                    "label": "kinase_gene_name"
                },
                {
                    "type": "string",
                    "label": "xref_key"
                },
                {
                    "type": "string",
                    "label": "xref_id"
                },
                {
                    "type": "string",
                    "label": "src_xref_key"
                },
                {
                    "type": "string",
                    "label": "src_xref_id"
                },
                {
                    "type": "string",
                    "label": "phosphorylated_residue"
                },
                {
                    "type": "string",
                    "label": "phosphorylation_annotation"
                },
                {
                    "type": "string",
                    "label": "eco_id"
                }
            ],
            [
                "P0DTC9-1",
                "176",
                "Ser",
                "",
                "",
                "protein_xref_uniprotkb",
                "P0DTC9",
                "protein_xref_uniprotkb",
                "P0DTC9",
                "Phosphoserine",
                "Phosphoserine; by host",
                ""
            ]
        ]
    },
    "readme": "Name\n   - SARS-CoV2 Phosphorylation Sites (UniProtKB)\n\nVersion\n   - 1.7.13\n\nCreated on\n  - 2020-04-19T12:18:14.955878\n\nModified on\n   - 2020-04-19T12:18:28.052367\n\nCreated by\n   - Jeet Vora [jeetvora@gwu.edu], Rahi Navelkar [rsn13@gwu.edu], Robel Kahsay [rykahsay@gwu.edu]\n\nAuthors\n   - Maria Martin [martin@ebi.ac.uk], Preethi Vasudev [pvasudev@ebi.ac.uk]\n\nChecksum\n   - \n\nUsability Domain\n   - The SARS coronavirus (SARS-CoV-2 or 2019-nCoV) Phosphorylation Sites (UniProtKB) dataset contains sarscov2 [taxid:2697049] UniProtKB canonical accessions with information on reported and predicted phosphoryation sites with evidence in UniProtKB database. The dataset is derived from 2020-01 UniProtKB release. If you use this dataset please provide proper attribution to EMBL-EBI-UniProtKB and GlyGen\n\nDescription Domain\n   Keywords\n   - phosphoryation Sites\n   - ptm processing\n   - UniProtKB\n\n   Pipeline Steps\n   - Step-1: The script loads the phosphorylation information from the triplestore conatining triples from the nt file and extracts as a csv dataset\n\nExecution Domain\n   Scripts   - https://github.com/GW-HIVE/glygen-backend-integration/blob/master/pipeline/integrator/make-proteoform-dataset.py\n\n\n   Software Prerequisites\n      Name: Python\n      Version: 2.7.5\n      URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n   Input Subdomain\n      Name: uniprot-proteome-human-sars-coronavirus.nt\n      URI: https://data.glygen.org/ln2data/releases/data/v-1.7.13/source/uniprot-proteome-human-sars-coronavirus.nt\n      Name: sarscov2_protein_masterlist.csv\n      URI: https://data.glygen.org/ln2data/releases/data/v-1.7.13/reviewed/sarscov2_protein_masterlist.csv\n   Output Subdomain\n      Name: sarscov2_proteoform_phosphorylation_sites_uniprotkb.csv\n      URI: http://data.glygen.org/ln2data/releases/data/v-1.7.13/reviewed/sarscov2_proteoform_phosphorylation_sites_uniprotkb.csv\n      Name: sarscov2_proteoform_phosphorylation_sites_uniprotkb.stat.csv\n      URI: http://data.glygen.org/ln2data/releases/data/v-1.7.13/reviewed/sarscov2_proteoform_phosphorylation_sites_uniprotkb.stat.csv\n\nFields\n      Name: \"uniprotkb_canonical_ac\"\n     Description: \"\"\n      Unique Values: \"1\"\n      Name: \"phosphorylation_site_uniprotkb\"\n     Description: \"Site on the protein sequence of the UniProtKB entry where phosphorylation is observed\"\n      Unique Values: \"1\"\n      Name: \"xref_id\"\n     Description: \"ID of the X-ref\"\n      Unique Values: \"1\"\n      Name: \"phosphorylation_annotation\"\n     Description: \"The phosphorylation annotation in UniProtKB that provides more context and description of a phosphorylation event on a protein.\"\n      Unique Values: \"1\"\n      Name: \"kinase_gene_name\"\n     Description: \"\"\n      Unique Values: \"1\"\n      Name: \"phosphorylated_residue\"\n     Description: \"The amino acid that is modified by phosphorylation\"\n      Unique Values: \"1\"\n      Name: \"kinase_uniprotkb_canonical_ac\"\n     Description: \"The UniProtKB canonical accession for the kinase enzyme that is phosphorylating the protein\"\n      Unique Values: \"1\"\n      Name: \"amino_acid\"\n     Description: \"Three letter abbreviation code of the amino acid\"\n      Unique Values: \"1\"\n      Name: \"src_xref_key\"\n     Description: \"Source Xref  key\"\n      Unique Values: \"1\"\n      Name: \"src_xref_id\"\n     Description: \"Source X-ref ID\"\n      Unique Values: \"1\"\n      Name: \"eco_id\"\n     Description: \"Evidence & Conclusion Ontology (ECO) identifier\"\n      Unique Values: \"1\"\n      Name: \"xref_key\"\n     Description: \"Source key associated to the  xref_id\"\n      Unique Values: \"1\"",
    "downloadurl": "/ln2data/releases/data/v-1.7.13/reviewed/sarscov2_proteoform_phosphorylation_sites_uniprotkb.csv"
}