{
    "bcoid": "GLY_000417",
    "title": "SARS-CoV1 Protein Citations (RefSeq)",
    "description": "The SARS coronavirus (SARS-CoV-1) Protein Citations (RefSeq) datasets contains sarscov1 [taxid:694009] ...",
    "filename": "sarscov1_protein_citations_refseq.csv",
    "filetype": "csv",
    "categories": {
        "species": "SARS coronavirus (SARS-CoV-1)",
        "molecule": "Protein",
        "tags": "Protein Citations",
        "file_type": "csv",
        "status": "Reviewed",
        "scope": "internal"
    },
    "minitable": {
        "content": [
            [
                "P59594-1...",
                "Mass spectro..."
            ],
            [
                "P59637-1...",
                "Small envelo..."
            ]
        ],
        "headers": [
            "uniprotkb_ca...",
            "title..."
        ],
        "colwidth": [
            "40%",
            "20%"
        ]
    },
    "sampledata": {
        "type": "table",
        "data": [
            [
                {
                    "type": "string",
                    "label": "uniprotkb_canonical_ac"
                },
                {
                    "type": "string",
                    "label": "title"
                },
                {
                    "type": "string",
                    "label": "journal_name"
                },
                {
                    "type": "string",
                    "label": "publication_date"
                },
                {
                    "type": "string",
                    "label": "authors"
                },
                {
                    "type": "string",
                    "label": "xref_key"
                },
                {
                    "type": "string",
                    "label": "xref_id"
                },
                {
                    "type": "string",
                    "label": "src_xref_key"
                },
                {
                    "type": "string",
                    "label": "src_xref_id"
                }
            ],
            [
                "P59594-1",
                "Mass spectrometric characterization of proteins from the SARS virus: a preliminary report.",
                "Molecular & cellular proteomics : MCP",
                "2003 May",
                "Krokhin O, Li Y, Andonov A, Feldmann H, Flick R, Jones S, Stroeher U, Bastien N, Dasuri KV, Cheng K, Simonsen JN, Perreault H, Wilkins J, Ens W, Plummer F, Standing KG",
                "protein_xref_pubmed",
                "12775768",
                "protein_xref_refseq",
                "NP_828851.1"
            ],
            [
                "P59637-1",
                "Small envelope protein E of SARS: cloning, expression, purification, CD determination, and bioinformatics analysis.",
                "Acta pharmacologica Sinica",
                "2003 Jun",
                "Shen X, Xue JH, Yu CY, Luo HB, Qin L, Yu XJ, Chen J, Chen LL, Xiong B, Yue LD, Cai JH, Shen JH, Luo XM, Chen KX, Shi TL, Li YX, Hu GX, Jiang HL",
                "protein_xref_pubmed",
                "12791175",
                "protein_xref_refseq",
                "NP_828854.1"
            ],
            [
                "P59595-1",
                "Mass spectrometric characterization of proteins from the SARS virus: a preliminary report.",
                "Molecular & cellular proteomics : MCP",
                "2003 May",
                "Krokhin O, Li Y, Andonov A, Feldmann H, Flick R, Jones S, Stroeher U, Bastien N, Dasuri KV, Cheng K, Simonsen JN, Perreault H, Wilkins J, Ens W, Plummer F, Standing KG",
                "protein_xref_pubmed",
                "12775768",
                "protein_xref_refseq",
                "NP_828858.1"
            ]
        ]
    },
    "readme": "Name\n   - SARS-CoV1 Protein Citations (RefSeq)\n\nVersion\n   - 1.7.13\n\nCreated on\n  - 2020-03-15T13:32:44.009025\n\nModified on\n   - 2020-04-09T18:39:36.624800\n\nCreated by\n   - Jeet Vora [jeetvora@gwu.edu], Rahi Navelkar [rsn13@gwu.edu], Robel Kahsay [rykahsay@gwu.edu]\n\nAuthors\n   - \n\nChecksum\n   - \n\nUsability Domain\n   - The SARS coronavirus (SARS-CoV-1) Protein Citations (RefSeq) datasets contains sarscov1 [taxid:694009] UniProtKB accessions mapped to publication information (pmid, title, journal name, publication, date, authors of corresponding RefSeq accessions. The dataset is derived from NCBI RefSeq Release 96, September 9, 2019. If you use this dataset please provide proper attribution to NCBI RefSeq and GlyGen\n\nDescription Domain\n   Keywords\n   - PMID\n   - journal\n   - citations\n   - authors\n   - RefSeq\n   - PubMed\n\n   Pipeline Steps\n   - Step-1: The script parses the NCBI RefSeq gpff files to extract the publication information. The script also maps RefSeq accesion to the UniProtKB Canonical accessions\n\nExecution Domain\n   Scripts   - https://github.com/GW-HIVE/glygen-backend-integration/blob/master/pipeline/integrator/make-protein-dataset.py\n\n\n   Software Prerequisites\n      Name: Python\n      Version: 2.7.5\n      URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n   Input Subdomain\n      Name: refseq_protein_all_viral.gpff\n      URI: https://data.glygen.org/ln2data/releases/data/v-1.7.13/source/refseq_protein_all_viral.gpff\n      Name: sarscov1_protein_xref_refseq.csv\n      URI: https://data.glygen.org/ln2data/releases/data/v-1.7.13/reviewed/sarscov1_protein_xref_refseq.csv\n   Output Subdomain\n      Name: sarscov1_protein_citations_refseq.csv\n      URI: http://data.glygen.org/ln2data/releases/data/v-1.7.13/reviewed/sarscov1_protein_citations_refseq.csv\n      Name: sarscov1_protein_citations_refseq.stat.csv\n      URI: http://data.glygen.org/ln2data/releases/data/v-1.7.13/reviewed/sarscov1_protein_citations_refseq.stat.csv\n\nFields\n      Name: \"uniprotkb_canonical_ac\"\n     Description: \"\"\n      Unique Values: \"3\"\n      Name: \"xref_id\"\n     Description: \"ID of the X-ref\"\n      Unique Values: \"2\"\n      Name: \"title\"\n     Description: \"Title of the published article in the journal\"\n      Unique Values: \"2\"\n      Name: \"src_xref_key\"\n     Description: \"Source Xref  key\"\n      Unique Values: \"1\"\n      Name: \"src_xref_id\"\n     Description: \"Source X-ref ID\"\n      Unique Values: \"3\"\n      Name: \"journal_name\"\n     Description: \"The name of the journal in which the article is published\"\n      Unique Values: \"2\"\n      Name: \"authors\"\n     Description: \"NA\"\n      Unique Values: \"2\"\n      Name: \"publication_date\"\n     Description: \"Contains the full date on which the issue of the journal was published. Sourced from MEDLINE/PubMed data element(fields) description.\"\n      Unique Values: \"2\"\n      Name: \"xref_key\"\n     Description: \"Source key associated to the  xref_id\"\n      Unique Values: \"1\"",
    "downloadurl": "/ln2data/releases/data/v-1.7.13/reviewed/sarscov1_protein_citations_refseq.csv"
}