{ "bcoid": "GLY_000407", "title": "Rat NCBI Protein Linkouts", "description": "The Rat NCBI Protein Linkouts contains rat [taxid:10116] NCBI RefSeq accessions with their corresponding ...", "filename": "rat_protein_ncbi_linkouts.csv", "filetype": "csv", "categories": { "species": "Rattus norvegicus", "molecule": "Protein", "tags": "NCBI Linkouts", "file_type": "csv", "status": "Reviewed", "scope": "internal" }, "minitable": { "content": [ [ "10227...", "Protein..." ], [ "10227...", "Protein..." ] ], "headers": [ "ProviderId...", "Database..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "ProviderId" }, { "type": "string", "label": "Database" }, { "type": "string", "label": "UID" }, { "type": "string", "label": "URL" }, { "type": "string", "label": "IconUrl" }, { "type": "string", "label": "UrlName" }, { "type": "string", "label": "SubjectType" }, { "type": "string", "label": "Attribute" } ], [ "10227", "Protein", "NP_001008331.1", "https://glygen.org/protein/Q5RJK9", "", "", "", "" ], [ "10227", "Protein", "NP_001011906.1", "https://glygen.org/protein/Q5RJK8", "", "", "", "" ], [ "10227", "Protein", "XP_006223048.1", "https://glygen.org/protein/D3ZB44", "", "", "", "" ], [ "10227", "Protein", "NP_001008359.1", "https://glygen.org/protein/Q5RJK0", "", "", "", "" ], [ "10227", "Protein", "NP_001013108.1", "https://glygen.org/protein/Q5RJK3", "", "", "", "" ], [ "10227", "Protein", "NP_001008314.2", "https://glygen.org/protein/Q5RJK5", "", "", "", "" ], [ "10227", "Protein", "NP_001101416.1", "https://glygen.org/protein/D3ZB48", "", "", "", "" ], [ "10227", "Protein", "NP_001012131.1", "https://glygen.org/protein/Q5RJK6", "", "", "", "" ], [ "10227", "Protein", "NP_997696.1", "https://glygen.org/protein/Q6MG55", "", "", "", "" ], [ "10227", "Protein", "NP_001003691.1", "https://glygen.org/protein/Q6MG56", "", "", "", "" ], [ "10227", "Protein", "XP_017448147.1", "https://glygen.org/protein/A0A0G2K0H3", "", "", "", "" ], [ "10227", "Protein", "NP_001014107.1", "https://glygen.org/protein/Q5XIH0", "", "", "", "" ], [ "10227", "Protein", "NP_001003975.1", "https://glygen.org/protein/Q6MG51", "", "", "", "" ], [ "10227", "Protein", "NP_001100387.1", "https://glygen.org/protein/F1M2W7", "", "", "", "" ], [ "10227", "Protein", "NP_001001934.1", "https://glygen.org/protein/Q6MG53", "", "", "", "" ], [ "10227", "Protein", "NP_001102329.1", "https://glygen.org/protein/D4AAV0", "", "", "", "" ], [ "10227", "Protein", "NP_036752.1", "https://glygen.org/protein/P20961", "", "", "", "" ], [ "10227", "Protein", "NP_001003976.1", "https://glygen.org/protein/Q6MG59", "", "", "", "" ], [ "10227", "Protein", "NP_001020891.1", "https://glygen.org/protein/Q4KLP0", "", "", "", "" ], [ "10227", "Protein", "XP_002725195.1", "https://glygen.org/protein/M0RAP6", "", "", "", "" ], [ "10227", "Protein", "NP_001258102.1", "https://glygen.org/protein/M0RAP5", "", "", "", "" ], [ "10227", "Protein", "NP_001000969.1", "https://glygen.org/protein/A0A0G2JVG8", "", "", "", "" ], [ "10227", "Protein", "NP_001101860.2", "https://glygen.org/protein/F1M1W4", "", "", "", "" ], [ "10227", "Protein", "NP_445755.1", "https://glygen.org/protein/P34997", "", "", "", "" ], [ "10227", "Protein", "NP_114183.1", "https://glygen.org/protein/Q9WUD9", "", "", "", "" ], [ "10227", "Protein", "NP_599203.1", "https://glygen.org/protein/Q8R553", "", "", "", "" ], [ "10227", "Protein", "NP_598303.1", "https://glygen.org/protein/Q925Q4", "", "", "", "" ], [ "10227", "Protein", "NP_446175.1", "https://glygen.org/protein/Q9QX69", "", "", "", "" ], [ "10227", "Protein", "NP_446099.1", "https://glygen.org/protein/P30348", "", "", "", "" ], [ "10227", "Protein", "NP_001257726.1", "https://glygen.org/protein/Q9WUD2", "", "", "", "" ], [ "10227", "Protein", "NP_001000297.1", "https://glygen.org/protein/A0A0G2JUK9", "", "", "", "" ], [ "10227", "Protein", "NP_001000397.1", "https://glygen.org/protein/D3ZLV0", "", "", "", "" ], [ "10227", "Protein", "NP_001102138.1", "https://glygen.org/protein/D3ZLV5", "", "", "", "" ], [ "10227", "Protein", "NP_543173.1", "https://glygen.org/protein/Q8VHI8", "", "", "", "" ], [ "10227", "Protein", "NP_001127976.1", "https://glygen.org/protein/D3ZLV9", "", "", "", "" ], [ "10227", "Protein", "XP_006224017.1", "https://glygen.org/protein/A0A096MJY4", "", "", "", "" ], [ "10227", "Protein", "NP_075245.1", "https://glygen.org/protein/O88181", "", "", "", "" ], [ "10227", "Protein", "XP_001077762.3", "https://glygen.org/protein/A0A096MJY1", "", "", "", "" ], [ "10227", "Protein", "NP_001034467.1", "https://glygen.org/protein/Q2KMM2", "", "", "", "" ], [ "10227", "Protein", "NP_001034544.1", "https://glygen.org/protein/Q2KN99", "", "", "", "" ], [ "10227", "Protein", "NP_001000505.1", "https://glygen.org/protein/D4A838", "", "", "", "" ], [ "10227", "Protein", "NP_001013919.1", "https://glygen.org/protein/Q5M808", "", "", "", "" ], [ "10227", "Protein", "NP_001000156.1", "https://glygen.org/protein/D3ZKU2", "", "", "", "" ], [ "10227", "Protein", "NP_001106994.1", "https://glygen.org/protein/O55043", "", "", "", "" ], [ "10227", "Protein", "NP_001100368.1", "https://glygen.org/protein/D4A831", "", "", "", "" ], [ "10227", "Protein", "XP_006234529.2", "https://glygen.org/protein/D4A832", "", "", "", "" ], [ "10227", "Protein", "NP_001099788.2", "https://glygen.org/protein/D3ZZY5", "", "", "", "" ], [ "10227", "Protein", "NP_001099957.1", "https://glygen.org/protein/D4A834", "", "", "", "" ], [ "10227", "Protein", "NP_001116254.1", "https://glygen.org/protein/B0JYS4", "", "", "", "" ], [ "10227", "Protein", "NP_058873.1", "https://glygen.org/protein/O54783", "", "", "", "" ], [ "10227", "Protein", "NP_001041443.1", "https://glygen.org/protein/Q6QI33", "", "", "", "" ], [ "10227", "Protein", "XP_006224800.1", "https://glygen.org/protein/M0RCZ7", "", "", "", "" ], [ "10227", "Protein", "XP_003748902.1", "https://glygen.org/protein/M0RCZ2", "", "", "", "" ], [ "10227", "Protein", "NP_001007723.1", "https://glygen.org/protein/P01946", "", "", "", "" ], [ "10227", "Protein", "NP_001000461.1", "https://glygen.org/protein/M0RCZ1", "", "", "", "" ], [ "10227", "Protein", "NP_001004225.1", "https://glygen.org/protein/P56571", "", "", "", "" ], [ "10227", "Protein", "NP_001128373.1", "https://glygen.org/protein/P20646", "", "", "", "" ], [ "10227", "Protein", "NP_001014183.1", "https://glygen.org/protein/P56574", "", "", "", "" ], [ "10227", "Protein", "NP_001020304.1", "https://glygen.org/protein/Q5BK10", "", "", "", "" ], [ "10227", "Protein", "NP_062241.2", "https://glygen.org/protein/O35152", "", "", "", "" ], [ "10227", "Protein", "NP_598255.1", "https://glygen.org/protein/P48965", "", "", "", "" ], [ "10227", "Protein", "NP_001102834.1", "https://glygen.org/protein/M0R7U6", "", "", "", "" ], [ "10227", "Protein", "NP_954891.1", "https://glygen.org/protein/Q6P7Q1", "", "", "", "" ], [ "10227", "Protein", "NP_598256.1", "https://glygen.org/protein/P48966", "", "", "", "" ], [ "10227", "Protein", "NP_036898.1", "https://glygen.org/protein/P48961", "", "", "", "" ], [ "10227", "Protein", "NP_059054.1", "https://glygen.org/protein/O35158", "", "", "", "" ], [ "10227", "Protein", "NP_001102421.1", "https://glygen.org/protein/M0R7U1", "", "", "", "" ], [ "10227", "Protein", "NP_997477.1", "https://glygen.org/protein/Q6P7Q4", "", "", "", "" ], [ "10227", "Protein", "NP_001178649.1", "https://glygen.org/protein/F1M4Y5", "", "", "", "" ], [ "10227", "Protein", "NP_001013176.1", "https://glygen.org/protein/Q6AY39", "", "", "", "" ], [ "10227", "Protein", "NP_001040579.1", "https://glygen.org/protein/Q14U74", "", "", "", "" ], [ "10227", "Protein", "NP_001102495.1", "https://glygen.org/protein/Q5M807", "", "", "", "" ], [ "10227", "Protein", "NP_445740.1", "https://glygen.org/protein/P02764", "", "", "", "" ], [ "10227", "Protein", "NP_036813.2", "https://glygen.org/protein/P02767", "", "", "", "" ], [ "10227", "Protein", "NP_001164065.1", "https://glygen.org/protein/D3ZNX2", "", "", "", "" ], [ "10227", "Protein", "NP_001099679.1", "https://glygen.org/protein/D4A4W8", "", "", "", "" ], [ "10227", "Protein", "NP_001011943.1", "https://glygen.org/protein/Q6AYD2", "", "", "", "" ], [ "10227", "Protein", "NP_001000252.1", "https://glygen.org/protein/D4A4W0", "", "", "", "" ], [ "10227", "Protein", "XP_017443583.1", "https://glygen.org/protein/D4A4W1", "", "", "", "" ], [ "10227", "Protein", "XP_006220900.1", "https://glygen.org/protein/A0A0G2K2F3", "", "", "", "" ], [ "10227", "Protein", "NP_001102458.1", "https://glygen.org/protein/D4A4W4", "", "", "", "" ], [ "10227", "Protein", "XP_008765859.2", "https://glygen.org/protein/D4A4W5", "", "", "", "" ], [ "10227", "Protein", "NP_001102977.1", "https://glygen.org/protein/D4A4W6", "", "", "", "" ], [ "10227", "Protein", "NP_001103026.1", "https://glygen.org/protein/D4A4W7", "", "", "", "" ] ] }, "readme": "Name\n - Rat NCBI Protein Linkouts\n\nVersion\n - 1.7.13\n\nCreated on\n - 2020-03-20T15:56:44.646296\n\nModified on\n - 2020-04-07T10:36:34.047702\n\nCreated by\n - Jeet Vora [jeetvora@gwu.edu], Rahi Navelkar [rsn13@gwu.edu], Robel Kahsay [rykahsay@gwu.edu]\n\nAuthors\n - \n\nChecksum\n - \n\nUsability Domain\n - The Rat NCBI Protein Linkouts contains rat [taxid:10116] NCBI RefSeq accessions with their corresponding GlyGen protein detail page URLs. The dataset is formatted as per NCBI non-bib. linkouts guidelines where 10277 is the GlyGen's provider ID.\n - The RefSeq accessions are The dataset is derived from NCBI RefSeq Release 96, September 9, 2019\n\nDescription Domain\n Keywords\n - NCBI Protein Linkouts\n - RefSeq\n\n Pipeline Steps\n - Step-1: The script loads the RefSeq accessions, RefSeq protein name and based on the RefSeq-UniprotKB accession mapping generates the GlyGen protein detail page URLs. The script also enters the other fields as defined by the NCBI Protein Linkouts to generate a csv dataset\n\nExecution Domain\n Scripts - https://github.com/GW-HIVE/glygen-backend-integration/blob/master/pipeline/integrator/make-protein-dataset.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: rat_protein_xref_refseq.csv\n URI: https://data.glygen.org/ln2data/releases/data/v-1.7.13/reviewed/rat_protein_xref_refseq.csv\n Output Subdomain\n Name: rat_protein_ncbi_linkouts.csv\n URI: https://data.glygen.org/ln2data/releases/data/v-1.7.13/reviewed/rat_protein_ncbi_linkouts.csv\n Name: rat_protein_ncbi_linkouts.stat.csv\n URI: http://data.glygen.org/ln2data/releases/data/v-1.7.13/reviewed/rat_protein_ncbi_linkouts.stat.csv\n\nFields\n Name: \"UID\"\n Description: \"NA\"\n Unique Values: \"15779\"\n Name: \"Database\"\n Description: \"NA\"\n Unique Values: \"1\"\n Name: \"URL\"\n Description: \"NA\"\n Unique Values: \"15779\"\n Name: \"Attribute\"\n Description: \"NA\"\n Unique Values: \"1\"\n Name: \"SubjectType\"\n Description: \"NA\"\n Unique Values: \"1\"\n Name: \"IconUrl\"\n Description: \"NA\"\n Unique Values: \"1\"\n Name: \"ProviderId\"\n Description: \"NA\"\n Unique Values: \"1\"\n Name: \"UrlName\"\n Description: \"NA\"\n Unique Values: \"1\"", "downloadurl": "/ln2data/releases/data/v-1.7.13/reviewed/rat_protein_ncbi_linkouts.csv" }