{ "bcoid": "GLY_000256", "title": "Human Protein Citations (RefSeq)", "description": "The Human Protein Citations (RefSeq) datasets contains human [taxid:9606] UniProtKB accessions mapped ...", "filename": "human_protein_citations_refseq.csv", "filetype": "csv", "categories": { "species": "Homo sapiens", "molecule": "Protein", "tags": "Protein Citations", "file_type": "csv", "status": "Reviewed", "scope": "internal" }, "minitable": { "content": [ [ "P34741-1...", "Emerging rol..." ], [ "O14681-1...", "Reduced expr..." ] ], "headers": [ "uniprotkb_ca...", "title..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "uniprotkb_canonical_ac" }, { "type": "string", "label": "title" }, { "type": "string", "label": "journal_name" }, { "type": "string", "label": "publication_date" }, { "type": "string", "label": "authors" }, { "type": "string", "label": "xref_key" }, { "type": "string", "label": "xref_id" }, { "type": "string", "label": "src_xref_key" }, { "type": "string", "label": "src_xref_id" } ], [ "P34741-1", "Emerging roles of syndecan 2 in epithelial and mesenchymal cancer progression.", "IUBMB life", "2017 Nov", "Mytilinaiou M, Nikitovic D, Berdiaki A, Kostouras A, Papoutsidakis A, Tsatsakis AM, Tzanakakis GN", "protein_xref_pubmed", "28940845", "protein_xref_refseq", "NP_002989.2" ], [ "O14681-1", "Reduced expression of EI24 confers resistance to gefitinib through IGF-1R signaling in PC9 NSCLC cells.", "Lung cancer (Amsterdam, Netherlands)", "2015 Nov", "Choi JM, Jang JY, Choi YR, Kim HR, Cho BC, Lee HW", "protein_xref_pubmed", "26342551", "protein_xref_refseq", "NP_001277064.1" ], [ "Q86U86-1", "PBRM1 bromodomains variably influence nucleosome interactions and cellular function.", "The Journal of biological chemistry", "2018 Aug 31", "Slaughter MJ, Shanle EK, McFadden AW, Hollis ES, Suttle LE, Strahl BD, Davis IJ", "protein_xref_pubmed", "29986887", "protein_xref_refseq", "NP_060783.3" ], [ "O15353-1", "Whole-Exome Sequencing in a South American Cohort Links ALDH1A3, FOXN1 and Retinoic Acid Regulation Pathways to Autism Spectrum Disorders.", "PloS one", "2015", "Moreno-Ramos OA, Olivares AM, Haider NB, de Autismo LC, Lattig MC", "protein_xref_pubmed", "26352270", "protein_xref_refseq", "NP_003584.2" ], [ "Q68CQ7-1", "ITIH3 polymorphism may confer susceptibility to psychiatric disorders by altering the expression levels of GLT8D1.", "Journal of psychiatric research", "2014 Mar", "Sasayama D, Hori H, Yamamoto N, Nakamura S, Teraishi T, Tatsumi M, Hattori K, Ota M, Higuchi T, Kunugi H", "protein_xref_pubmed", "24373612", "protein_xref_refseq", "NP_001010983.1" ], [ "Q8WW38-1", "Transcriptional cofactors of the FOG family interact with GATA proteins by means of multiple zinc fingers.", "The EMBO journal", "1999 May 17", "Fox AH, Liew C, Holmes M, Kowalski K, Mackay J, Crossley M", "protein_xref_pubmed", "10329627", "protein_xref_refseq", "NP_036214.2" ], [ "Q9Y3L5-1", "Combined high-resolution array-based comparative genomic hybridization and expression profiling of ETV6/RUNX1-positive acute lymphoblastic leukemias reveal a high incidence of cryptic Xq duplications and identify several putative target genes within the commonly gained region.", "Leukemia", "2007 Oct", "Lilljebjorn H, Heidenblad M, Nilsson B, Lassen C, Horvat A, Heldrup J, Behrendtz M, Johansson B, Andersson A, Fioretos T", "protein_xref_pubmed", "17690704", "protein_xref_refseq", "NP_001258115.1" ], [ "P16619-1", "Differential recognition and scavenging of native and truncated macrophage-derived chemokine (macrophage-derived chemokine/CC chemokine ligand 22) by the D6 decoy receptor.", "Journal of immunology (Baltimore, Md. : 1950)", "2004 Apr 15", "Bonecchi R, Locati M, Galliera E, Vulcano M, Sironi M, Fra AM, Gobbi M, Vecchi A, Sozzani S, Haribabu B, Van Damme J, Mantovani A", "protein_xref_pubmed", "15067078", "protein_xref_refseq", "NP_001001437.2" ], [ "P57727-1", "Identification of TMPRSS3 as a Significant Contributor to Autosomal Recessive Hearing Loss in the Chinese Population.", "Neural plasticity", "2017", "Gao X, Huang SS, Yuan YY, Xu JC, Gu P, Bai D, Kang DY, Han MY, Wang GJ, Zhang MG, Li J, Dai P", "protein_xref_pubmed", "28695016", "protein_xref_refseq", "NP_001243246.1" ], [ "Q96RG2-1", "The Regulation of Cbf1 by PAS Kinase Is a Pivotal Control Point for Lipogenesis vs. Respiration in Saccharomyces cerevisiae.", "G3 (Bethesda, Md.)", "2019 Jan 9", "DeMille D, Pape JA, Bikman BT, Ghassemian M, Grose JH", "protein_xref_pubmed", "30381292", "protein_xref_refseq", "NP_001239053.1" ], [ "Q12951-1", "Chromosomal localization of six human forkhead genes, freac-1 (FKHL5), -3 (FKHL7), -4 (FKHL8), -5 (FKHL9), -6 (FKHL10), and -8 (FKHL12).", "Genomics", "1995 Dec 10", "Larsson C, Hellqvist M, Pierrou S, White I, Enerback S, Carlsson P", "protein_xref_pubmed", "8825632", "protein_xref_refseq", "NP_036320.2" ], [ "P55289-1", "Identification of genes associated with non-small-cell lung cancer promotion and progression.", "Lung cancer (Amsterdam, Netherlands)", "2010 Feb", "Bankovic J, Stojsic J, Jovanovic D, Andjelkovic T, Milinkovic V, Ruzdijic S, Tanic N", "protein_xref_pubmed", "19473719", "protein_xref_refseq", "NP_001304156.1" ], [ "P58417-1", "Structure and evolution of neurexophilin.", "The Journal of neuroscience : the official journal of the Society for Neuroscience", "1996 Jul 15", "Petrenko AG, Ullrich B, Missler M, Krasnoperov V, Rosahl TW, Sudhof TC", "protein_xref_pubmed", "8699246", "protein_xref_refseq", "NP_689958.1" ], [ "P85299-1", "Proteome-wide analysis of phospho-regulated PDZ domain interactions.", "Molecular systems biology", "2018 Aug 20", "Sundell GN, Arnold R, Ali M, Naksukpaiboon P, Orts J, Guntert P, Chi CN, Ivarsson Y", "protein_xref_pubmed", "30126976", "protein_xref_refseq", "NP_001017528.1" ], [ "P13693-1", "Some Biological Consequences of the Inhibition of Na,K-ATPase by Translationally Controlled Tumor Protein (TCTP).", "International journal of molecular sciences", "2018 Jun 4", "Jung J, Ryu S, Ki IA, Woo HA, Lee K", "protein_xref_pubmed", "29867020", "protein_xref_refseq", "NP_001273202.1" ], [ "Q8IY92-1", "RAD52 and SLX4 act nonepistatically to ensure telomere stability during alternative telomere lengthening.", "Genes & development", "2019 Feb 1", "Verma P, Dilley RL, Zhang T, Gyparaki MT, Li Y, Greenberg RA", "protein_xref_pubmed", "30692206", "protein_xref_refseq", "NP_115820.2" ], [ "Q14957-1", "Positive Allosteric Modulators of GluN2A-Containing NMDARs with Distinct Modes of Action and Impacts on Circuit Function.", "Neuron", "2016 Mar 2", "Hackos DH, Lupardus PJ, Grand T, Chen Y, Wang TM, Reynen P, Gustafson A, Wallweber HJ, Volgraf M, Sellers BD, Schwarz JB, Paoletti P, Sheng M, Zhou Q, Hanson JE", "protein_xref_pubmed", "26875626", "protein_xref_refseq", "NP_000826.2" ], [ "Q5ZPR3-1", "Characterization of mouse and human B7-H3 genes.", "Journal of immunology (Baltimore, Md. : 1950)", "2002 Jun 15", "Sun M, Richards S, Prasad DV, Mai XM, Rudensky A, Dong C", "protein_xref_pubmed", "12055244", "protein_xref_refseq", "NP_001019907.1" ], [ "P27448-5", "DLG5 connects cell polarity and Hippo signaling protein networks by linking PAR-1 with MST1/2.", "Genes & development", "2016 Dec 15", "Kwan J, Sczaniecka A, Heidary Arash E, Nguyen L, Chen CC, Ratkovic S, Klezovitch O, Attisano L, McNeill H, Emili A, Vasioukhin V", "protein_xref_pubmed", "28087714", "protein_xref_refseq", "NP_001122390.2" ], [ "P04280-1", "Length polymorphisms in human proline-rich protein genes generated by intragenic unequal crossing over.", "Genetics", "1988 Sep", "Lyons KM, Stein JH, Smithies O", "protein_xref_pubmed", "2851479", "protein_xref_refseq", "NP_005030.2" ], [ "P11473-1", "A single receptor identical with that from intestine/T47D cells mediates the action of 1,25-dihydroxyvitamin D-3 in HL-60 cells.", "Biochimica et biophysica acta", "1992 Aug 17", "Goto H, Chen KS, Prahl JM, DeLuca HF", "protein_xref_pubmed", "1324736", "protein_xref_refseq", "NP_000367.1" ], [ "Q6RW13-1", "The phosphatidylinositol transfer protein RdgBbeta binds 14-3-3 via its unstructured C-terminus, whereas its lipid-binding domain interacts with the integral membrane protein ATRAP (angiotensin II type I receptor-associated protein).", "The Biochemical journal", "2011 Oct 1", "Garner K, Li M, Ugwuanya N, Cockcroft S", "protein_xref_pubmed", "21728994", "protein_xref_refseq", "NP_001035284.1" ], [ "Q9H714-5", "A four-gene methylation marker panel as triage test in high-risk human papillomavirus positive patients.", "International journal of cancer", "2012 Apr 15", "Eijsink JJ, Lendvai A, Deregowski V, Klip HG, Verpooten G, Dehaspe L, de Bock GH, Hollema H, van Criekinge W, Schuuring E, van der Zee AG, Wisman GB", "protein_xref_pubmed", "21796628", "protein_xref_refseq", "NP_001273690.1" ], [ "Q9UNL4-1", "The essential role of tumor suppressor gene ING4 in various human cancers and non-neoplastic disorders.", "Bioscience reports", "2019 Jan 31", "Du Y, Cheng Y, Su G", "protein_xref_pubmed", "30643005", "protein_xref_refseq", "NP_001121054.1" ], [ "Q13761-1", "The role of E-cadherin and Runx3 in Helicobacter Pylori - Associated gastric carcinoma is achieved through regulating P21waf and P27 expression.", "Cancer genetics", "2018 Dec", "Bahnassy AA, Helal TE, El-Ghazawy IM, Samaan GF, Galal El-Din MM, Abdellateif MS, Desouky E, Zekri AN", "protein_xref_pubmed", "30553475", "protein_xref_refseq", "NP_001026850.1" ], [ "P28289-1", "How Leiomodin and Tropomodulin use a common fold for different actin assembly functions.", "Nature communications", "2015 Sep 15", "Boczkowska M, Rebowski G, Kremneva E, Lappalainen P, Dominguez R", "protein_xref_pubmed", "26370058", "protein_xref_refseq", "NP_001159588.1" ], [ "O15530-1", "Mitogenic activation, phosphorylation, and nuclear translocation of protein kinase Bbeta.", "The Journal of biological chemistry", "1997 Nov 28", "Meier R, Alessi DR, Cron P, Andjelkovic M, Hemmings BA", "protein_xref_pubmed", "9374542", "protein_xref_refseq", "NP_001248745.1" ], [ "Q9UPM8-1", "Association between Rare Variants in AP4E1, a Component of Intracellular Trafficking, and Persistent Stuttering.", "American journal of human genetics", "2015 Nov 5", "Raza MH, Mattera R, Morell R, Sainz E, Rahn R, Gutierrez J, Paris E, Root J, Solomon B, Brewer C, Basra MA, Khan S, Riazuddin S, Braun A, Bonifacino JS, Drayna D", "protein_xref_pubmed", "26544806", "protein_xref_refseq", "NP_001239056.1" ], [ "Q16718-1", "A human cDNA encoding the homologue of NADH: ubiquinone oxidoreductase subunit B13.", "Biochimica et biophysica acta", "1997 Feb 7", "Pata I, Tensing K, Metspalu A", "protein_xref_pubmed", "9048877", "protein_xref_refseq", "NP_001269349.1" ], [ "Q9BRZ2-1", "The ubiquitin ligase TRIM56 regulates innate immune responses to intracellular double-stranded DNA.", "Immunity", "2010 Nov 24", "Tsuchida T, Zou J, Saitoh T, Kumar H, Abe T, Matsuura Y, Kawai T, Akira S", "protein_xref_pubmed", "21074459", "protein_xref_refseq", "NP_112223.1" ], [ "A8K4G0-1", "Lipopolysaccharide-Induced CD300b Receptor Binding to Toll-like Receptor 4 Alters Signaling to Drive Cytokine Responses that Enhance Septic Shock.", "Immunity", "2016 Jun 21", "Voss OH, Murakami Y, Pena MY, Lee HN, Tian L, Margulies DH, Street JM, Yuen PS, Qi CF, Krzewski K, Coligan JE", "protein_xref_pubmed", "27261276", "protein_xref_refseq", "NP_777552.3" ], [ "P59534-1", "Evaluation of the bitterness of green tea catechins by a cell-based assay with the human bitter taste receptor hTAS2R39.", "Biochemical and biophysical research communications", "2011 Feb 25", "Narukawa M, Noga C, Ueno Y, Sato T, Misaka T, Watanabe T", "protein_xref_pubmed", "21272567", "protein_xref_refseq", "NP_795362.2" ], [ "P35367-1", "Molecular and cellular analysis of histamine H1 receptors on cultured smooth muscle cells.", "Journal of cellular biochemistry", "1989 Jun", "Mitsuchashi M, Payan DG", "protein_xref_pubmed", "2670975", "protein_xref_refseq", "NP_000852.1" ], [ "Q8N6Y1-1", "Cadherin superfamily genes: functions, genomic organization, and neurologic diversity.", "Genes & development", "2000 May 15", "Yagi T, Takeichi M", "protein_xref_pubmed", "10817752", "protein_xref_refseq", "NP_073754.2" ], [ "Q14493-1", "Cyclin F-Mediated Degradation of SLBP Limits H2A.X Accumulation and Apoptosis upon Genotoxic Stress in G2.", "Molecular cell", "2016 Nov 3", "Dankert JF, Rona G, Clijsters L, Geter P, Skaar JR, Bermudez-Hernandez K, Sassani E, Fenyo D, Ueberheide B, Schneider R, Pagano M", "protein_xref_pubmed", "27773672", "protein_xref_refseq", "NP_001293004.1" ], [ "Q99572-1", "Expression of a P2X7 receptor by a subpopulation of human osteoblasts.", "Journal of bone and mineral research : the official journal of the American Society for Bone and Mineral Research", "2001 May", "Gartland A, Hipskind RA, Gallagher JA, Bowler WB", "protein_xref_pubmed", "11341329", "protein_xref_refseq", "NP_002553.3" ], [ "Q96FF7-1", "MISP is a novel Plk1 substrate required for proper spindle orientation and mitotic progression.", "The Journal of cell biology", "2013 Mar 18", "Zhu M, Settele F, Kotak S, Sanchez-Pulido L, Ehret L, Ponting CP, Gonczy P, Hoffmann I", "protein_xref_pubmed", "23509069", "protein_xref_refseq", "NP_001278220.1" ], [ "Q92629-1", "Characterization of delta-sarcoglycan, a novel component of the oligomeric sarcoglycan complex involved in limb-girdle muscular dystrophy.", "The Journal of biological chemistry", "1996 Dec 13", "Jung D, Duclos F, Apostol B, Straub V, Lee JC, Allamand V, Venzke DP, Sunada Y, Moomaw CR, Leveille CJ, Slaughter CA, Crawford TO, McPherson JD, Campbell KP", "protein_xref_pubmed", "8943294", "protein_xref_refseq", "NP_000328.2" ], [ "Q6PI48-1", "An AP-MS- and BioID-compatible MAC-tag enables comprehensive mapping of protein interactions and subcellular localizations.", "Nature 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"P52789-1", "Non-proteolytic ubiquitination of Hexokinase 2 by HectH9 controls tumor metabolism and cancer stem cell expansion.", "Nature communications", "2019 Jun 14", "Lee HJ, Li CF, Ruan D, He J, Montal ED, Lorenz S, Girnun GD, Chan CH", "protein_xref_pubmed", "31201299", "protein_xref_refseq", "NP_000180.2" ], [ "P48061-1", "Association of SDF-1 and CXCR4 Polymorphisms With Susceptibility to Oral and Pharyngeal Squamous Cell Carcinoma.", "Anticancer research", "2019 Jun", "Huang SJ, Tseng YK, Lo YH, Wu PC, Lee JH, Liou HH, Liang CC, Yang CM, Wang CC, Yen LM, Lin YC, Lin MH, Ger LP, Tsai KW", "protein_xref_pubmed", "31177127", "protein_xref_refseq", "NP_000600.1" ], [ "Q9NS25-1", "Genomic organization, incidence, and localization of the SPAN-x family of cancer-testis antigens in melanoma tumors and cell lines.", "Clinical cancer research : an official journal of the American Association for Cancer Research", "2004 Jan 1", "Westbrook VA, Schoppee PD, Diekman AB, Klotz KL, Allietta M, Hogan KT, Slingluff CL, Patterson JW, Frierson HF, Irvin WP Jr, Flickinger CJ, Coppola MA, Herr JC", "protein_xref_pubmed", "14734458", "protein_xref_refseq", "NP_115850.2" ], [ "O15520-1", "Identification of six novel autophosphorylation sites on fibroblast growth factor receptor 1 and elucidation of their importance in receptor activation and signal transduction.", "Molecular and cellular biology", "1996 Mar", "Mohammadi M, Dikic I, Sorokin A, Burgess WH, Jaye M, Schlessinger J", "protein_xref_pubmed", "8622701", "protein_xref_refseq", "NP_004456.1" ], [ "Q16873-1", "Phosphorylation of Leukotriene C4 Synthase at Serine 36 Impairs Catalytic Activity.", "The Journal of biological chemistry", "2016 Aug 26", "Ahmad S, Ytterberg AJ, Thulasingam M, Tholander F, Bergman T, Zubarev R, Wetterholm A, Rinaldo-Matthis A, Haeggstrom JZ", "protein_xref_pubmed", "27365393", "protein_xref_refseq", "NP_665874.1" ], [ "Q13438-1", "Cloning and characterization of three isoforms of OS-9 cDNA and expression of the OS-9 gene in various human tumor cell lines.", "Journal of biochemistry", "1998 May", "Kimura Y, Nakazawa M, Yamada M", "protein_xref_pubmed", "9562620", "protein_xref_refseq", "NP_001017956.1" ], [ "P53667-1", "MiR-519d-3p suppresses breast cancer cell growth and motility via targeting LIM domain kinase 1.", "Molecular and cellular biochemistry", "2018 Jul", "Li D, Song H, Wu T, Xie D, Hu J, Zhao J, Shen Q, Fang L", "protein_xref_pubmed", "29188531", "protein_xref_refseq", "NP_001191355.1" ], [ "Q6Q4G3-1", "Regulation of human extravillous trophoblast function by membrane-bound peptidases.", "Biochimica et biophysica acta", "2005 Aug 1", "Fujiwara H, Higuchi T, Sato Y, Nishioka Y, Zeng BX, Yoshioka S, Tatsumi K, Ueda M, Maeda M", "protein_xref_pubmed", "15897020", "protein_xref_refseq", "NP_776161.3" ], [ "Q86UE6-1", "LRRTM1 on chromosome 2p12 is a maternally suppressed gene that is associated paternally with handedness and schizophrenia.", "Molecular psychiatry", 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Asians identifies 17 novel loci.", "Human molecular genetics", "2015 Mar 15", "He M, Xu M, Zhang B, Liang J, Chen P, Lee JY, Johnson TA, Li H, Yang X, Dai J, Liang L, Gui L, Qi Q, Huang J, Li Y, Adair LS, Aung T, Cai Q, Cheng CY, Cho MC, Cho YS, Chu M, Cui B, Gao YT, Go MJ, Gu D, Gu W, Guo H, Hao Y, Hong J, Hu Z, Hu Y, Huang J, Hwang JY, Ikram MK, Jin G, Kang DH, Khor CC, Kim BJ, Kim HT, Kubo M, Lee J, Lee J, Lee NR, Li R, Li J, Liu J, Longe J, Lu W, Lu X, Miao X, Okada Y, Ong RT, Qiu G, Seielstad M, Sim X, Song H, Takeuchi F, Tanaka T, Taylor PR, Wang L, Wang W, Wang Y, Wu C, Wu Y, Xiang YB, Yamamoto K, Yang H, Liao M, Yokota M, Young T, Zhang X, Kato N, Wang QK, Zheng W, Hu FB, Lin D, Shen H, Teo YY, Mo Z, Wong TY, Lin X, Mohlke KL, Ning G, Tsunoda T, Han BG, Shu XO, Tai ES, Wu T, Qi L", "protein_xref_pubmed", "25429064", "protein_xref_refseq", "NP_001159698.1" ], [ "Q9HD47-1", "Identification and characterization of the human MOG1 gene.", "Gene", "2001 Mar 21", "Marfatia KA, Harreman MT, Fanara P, Vertino PM, Corbett AH", "protein_xref_pubmed", "11290418", "protein_xref_refseq", "NP_001171272.1" ], [ "A8TX70-1", "Three novel collagen VI chains with high homology to the alpha3 chain.", "The Journal of biological chemistry", "2008 Apr 18", "Gara SK, Grumati P, Urciuolo A, Bonaldo P, Kobbe B, Koch M, Paulsson M, Wagener R", "protein_xref_pubmed", "18276594", "protein_xref_refseq", "NP_001265227.1" ], [ "Q8N9W6-1", "Oncogenic Role of BOLL in Colorectal Cancer.", "Digestive diseases and sciences", "2015 Jun", "Kang KJ, Pyo JH, Ryu KJ, Kim SJ, Ha JM, Choi K, Hong SN, Min BH, Chang DK, Son HJ, Rhee PL, Kim JJ, Kim YH", "protein_xref_pubmed", "25605553", "protein_xref_refseq", "NP_001271287.1" ], [ "O94911-1", "ABC gene expression profiles have clinical importance and possibly form a new hallmark of cancer.", "Tumour biology : the journal of the International Society for Oncodevelopmental Biology and Medicine", "2017 May", "Dvorak P, Pesta M, Soucek P", 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"NP_001275762.1" ], [ "O75333-1", "PAX9 and TGFB3 are linked to susceptibility to nonsyndromic cleft lip with or without cleft palate in the Japanese: population-based and family-based candidate gene analyses.", "Journal of human genetics", "2006", "Ichikawa E, Watanabe A, Nakano Y, Akita S, Hirano A, Kinoshita A, Kondo S, Kishino T, Uchiyama T, Niikawa N, Yoshiura K", "protein_xref_pubmed", "16247549", "protein_xref_refseq", "NP_005986.2" ], [ "Q14493-1", "Knocking down miR-384 promotes growth and metastasis of osteosarcoma MG63 cells by targeting SLBP.", "Artificial cells, nanomedicine, and biotechnology", "2019 Dec", "Wang Y, Huang H, Li Y", "protein_xref_pubmed", "31007083", "protein_xref_refseq", "NP_001293004.1" ], [ "Q8IYF3-1", "SHOC1 is a ERCC4-(HhH)2-like protein, integral to the formation of crossover recombination intermediates during mammalian meiosis.", "PLoS genetics", "2018 May", "Guiraldelli MF, Felberg A, Almeida LP, Parikh A, de Castro RO, Pezza RJ", "protein_xref_pubmed", "29742103", "protein_xref_refseq", "NP_001003811.1" ], [ "Q5XXA6-1", "Mutation assay of the novel gene DOG1 in gastrointestinal stromal tumors (GISTs).", "Journal of gastroenterology", "2008", "Miwa S, Nakajima T, Murai Y, Takano Y, Sugiyama T", "protein_xref_pubmed", "18648740", "protein_xref_refseq", "NP_060513.5" ], [ "P58546-1", "Myotrophin-kappaB DNA interaction in the initiation process of cardiac hypertrophy.", "Biochimica et biophysica acta", "2002 May 8", "Gupta S, Sen S", "protein_xref_pubmed", "12031792", "protein_xref_refseq", "NP_665807.1" ], [ "Q15058-1", "KIF14 promotes tumor progression and metastasis and is an independent predictor of poor prognosis in human gastric cancer.", "Biochimica et biophysica acta. Molecular basis of disease", "2019 Jan", "Yang Z, Li C, Yan C, Li J, Yan M, Liu B, Zhu Z, Wu Y, Gu Q", "protein_xref_pubmed", "30404039", "protein_xref_refseq", "NP_001292721.1" ], [ "Q92847-1", "Ghrelin, a gastrointestinal hormone, regulates energy balance and lipid metabolism.", "Bioscience reports", "2018 Oct 31", "Lv Y, Liang T, Wang G, Li Z", "protein_xref_pubmed", "30177523", "protein_xref_refseq", "NP_004113.1" ], [ "P51587-1", "Is BRCA mutational status a predictor of platinum-based chemotherapy related hematologic toxicity in high-grade serous ovarian cancer patients?", "Gynecologic oncology", "2019 Jul", "Tomao F, Musacchio L, Di Mauro F, Boccia SM, Di Donato V, Giancotti A, Perniola G, Palaia I, Muzii L, Benedetti Panici P", "protein_xref_pubmed", "31079832", "protein_xref_refseq", "NP_000050.2" ], [ "O60318-1", "GANP protein encoded on human chromosome 21/mouse chromosome 10 is associated with resistance to mammary tumor development.", "Cancer science", "2016 Apr", "Kuwahara K, Yamamoto-Ibusuki M, Zhang Z, Phimsen S, Gondo N, Yamashita H, Takeo T, Nakagata N, Yamashita D, Fukushima Y, Yamamoto Y, Iwata H, Saya H, Kondo E, Matsuo K, Takeya M, Iwase H, Sakaguchi N", "protein_xref_pubmed", "26749495", "protein_xref_refseq", "NP_003897.2" ], [ "Q15102-1", "FOXM1 induces a global methylation signature that mimics the cancer epigenome in head and neck squamous cell carcinoma.", "PloS one", "2012", "Teh MT, Gemenetzidis E, Patel D, Tariq R, Nadir A, Bahta AW, Waseem A, Hutchison IL", "protein_xref_pubmed", "22461910", "protein_xref_refseq", "NP_001139411.1" ], [ "Q8TCE6-1", "DENN domain-containing protein FAM45A regulates the homeostasis of late/multivesicular endosomes.", "Biochimica et biophysica acta. Molecular cell research", "2019 May", "Zhang J, Zhang K, Qi L, Hu Q, Shen Z, Liu B, Deng J, Zhang C, Zhang Y", "protein_xref_pubmed", "30771381", "protein_xref_refseq", "NP_001290040.1" ], [ "P23515-1", "Alterations in oligodendrocyte proteins, calcium homeostasis and new potential markers in schizophrenia anterior temporal lobe are revealed by shotgun proteome analysis.", "Journal of neural transmission (Vienna, Austria : 1996)", "2009 Mar", "Martins-de-Souza D, Gattaz WF, Schmitt A, Rewerts C, Marangoni S, Novello JC, Maccarrone G, Turck CW, Dias-Neto E", "protein_xref_pubmed", "19034380", "protein_xref_refseq", "NP_002535.3" ], [ "Q7Z5L4-1", "Spata19 is critical for sperm mitochondrial function and male fertility.", "Molecular reproduction and development", "2015 Nov", "Mi Y, Shi Z, Li J", "protein_xref_pubmed", "26265198", "protein_xref_refseq", "NP_001278921.1" ], [ "Q9NQS1-1", "Expression of granulosa cell microRNAs, AVEN and ATRX are associated with human blastocyst 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1", "Huhn O, Chazara O, Ivarsson MA, Retiere C, Venkatesan TC, Norman PJ, Hilton HG, Jayaraman J, Traherne JA, Trowsdale J, Ito M, Kling C, Parham P, Ghadially H, Moffett A, Sharkey AM, Colucci F", "protein_xref_pubmed", "30249807", "protein_xref_refseq", "NP_055033.2" ], [ "Q96S59-1", "Scaffolding protein RanBPM and its interactions in diverse signaling pathways in health and disease.", "Discovery medicine", "2018 Apr", "Das S, Haq S, Ramakrishna S", "protein_xref_pubmed", "29723489", "protein_xref_refseq", "NP_005484.2" ], [ "Q6PRD7-1", "Cementum protein 1 (CEMP1) induces a cementoblastic phenotype and reduces osteoblastic differentiation in periodontal ligament cells.", "Journal of cellular physiology", "2012 Feb", "Komaki M, Iwasaki K, Arzate H, Narayanan AS, Izumi Y, Morita I", "protein_xref_pubmed", "21465469", "protein_xref_refseq", "NP_001041677.1" ], [ "Q5DT21-1", "Expression and regulation of murine SPINK12, a potential orthologue of human LEKTI2.", "Experimental dermatology", "2011 Nov", "Reiss K, Meyer-Hoffert U, Fischer J, Sperrhacke M, Wu Z, Dimitrieva O, Krenek P, Suchanova S, Buryova H, Brauer R, Sedlacek R", "protein_xref_pubmed", "21899598", "protein_xref_refseq", "NP_001035523.1" ], [ "A5YKK6-1", "Molecular partners of hNOT/ALG3, the human counterpart of the Drosophila NOT and yeast ALG3 gene, suggest its involvement in distinct cellular processes relevant to congenital disorders of glycosylation, cancer, neurodegeneration and a variety of further pathologies.", "Human molecular genetics", "2018 Jun 1", "Hacker B, Schultheiss C, Doring M, Kurzik-Dumke U", "protein_xref_pubmed", "29547901", "protein_xref_refseq", "NP_001252541.1" ], [ "Q8IYT3-1", "Replication of previous genome-wide association studies of bone mineral density in premenopausal American women.", "Journal of bone and mineral research : the official journal of the American Society for Bone and Mineral Research", "2010 Aug", "Ichikawa S, Koller DL, Padgett LR, Lai D, Hui SL, Peacock M, Foroud T, Econs MJ", "protein_xref_pubmed", "20200978", "protein_xref_refseq", "NP_079335.2" ] ] }, "readme": "Name\n - Human Protein Citations (RefSeq)\n\nVersion\n - 1.7.13\n\nCreated on\n - 2019-09-06T14:06:38.983152\n\nModified on\n - 2020-04-10T11:45:37.582881\n\nCreated by\n - Jeet Vora [jeetvora@gwu.edu], Rahi Navelkar [rsn13@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Xavier Holmes [xavierh@email.gwu.edu]\n\nAuthors\n - \n\nChecksum\n - \n\nUsability Domain\n - The Human Protein Citations (RefSeq) datasets contains human [taxid:9606] UniProtKB accessions mapped to publication information (pmid, title, journal name, publication, date, authors of corresponding RefSeq accessions. The dataset is derived from NCBI RefSeq Release 96, September 9, 2019. If you use this dataset please provide proper attribution to NCBI RefSeq and GlyGen\n\nDescription Domain\n Keywords\n - PMID\n - journal\n - citations\n - authors\n - RefSeq\n - PubMed\n\n Pipeline Steps\n - Step-1: The script parses the NCBI RefSeq gpff files to extract the publication information. The script also maps RefSeq accesion to the UniProtKB Canonical accessions\n\nExecution Domain\n Scripts - https://github.com/GW-HIVE/glygen-backend-integration/blob/master/pipeline/integrator/make-protein-dataset.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: refseq_protein_all_9606.gpff\n URI: https://data.glygen.org/ln2data/releases/data/v-1.7.13/source/refseq_protein_all_9606.gpff\n Name: human_protein_xref_refseq.csv\n URI: https://data.glygen.org/ln2data/releases/data/v-1.7.13/reviewed/human_protein_xref_refseq.csv\n Output Subdomain\n Name: human_protein_citations_refseq.csv\n URI: http://data.glygen.org/ln2data/releases/data/v-1.7.13/reviewed/human_protein_citations_refseq.csv\n Name: human_protein_citations_refseq.stat.csv\n URI: http://data.glygen.org/ln2data/releases/data/v-1.7.13/reviewed/human_protein_citations_refseq.stat.csv\n\nFields\n Name: \"uniprotkb_canonical_ac\"\n Description: \"\"\n Unique Values: \"17330\"\n Name: \"xref_id\"\n Description: \"ID of the X-ref\"\n Unique Values: \"74304\"\n Name: \"title\"\n Description: \"Title of the published article in the journal\"\n Unique Values: \"74290\"\n Name: \"src_xref_key\"\n Description: \"Source Xref key\"\n Unique Values: \"1\"\n Name: \"src_xref_id\"\n Description: \"Source X-ref ID\"\n Unique Values: \"17357\"\n Name: \"journal_name\"\n Description: \"The name of the journal in which the article is published\"\n Unique Values: \"2676\"\n Name: \"authors\"\n Description: \"NA\"\n Unique Values: \"73871\"\n Name: \"publication_date\"\n Description: \"Contains the full date on which the issue of the journal was published. Sourced from MEDLINE/PubMed data element(fields) description.\"\n Unique Values: \"7888\"\n Name: \"xref_key\"\n Description: \"Source key associated to the xref_id\"\n Unique Values: \"1\"", "downloadurl": "/ln2data/releases/data/v-1.7.13/reviewed/human_protein_citations_refseq.csv" }