{ "bcoid": "GLY_000122", "title": "Mouse UniProtKB Xref Pfam", "description": "The Mouse UniProtKB Xref Pfam contains mouse [taxid:10090] UniProtKB canonical accessions cross-referenced ...", "filename": "mouse_protein_xref_pfam.csv", "filetype": "csv", "categories": { "species": "Mus musculus", "molecule": "Protein", "tags": "Pfam cross-references", "file_type": "csv", "status": "Reviewed", "scope": "internal" }, "minitable": { "content": [ [ "Q8BH24-1...", "protein_xref..." ], [ "Q8BH27-1...", "protein_xref..." ] ], "headers": [ "uniprotkb_ca...", "xref_key..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "uniprotkb_canonical_ac" }, { "type": "string", "label": "xref_key" }, { "type": "string", "label": "xref_id" }, { "type": "string", "label": "xref_label" } ], [ "Q8BH24-1", "protein_xref_pfam", "PF02990", "EMP70" ], [ "Q8BH27-1", "protein_xref_pfam", "PF00053", "Laminin_EGF" ], [ "Q8BH26-1", "protein_xref_pfam", "PF15190", "TMEM251" ], [ "Q8VF69-1", "protein_xref_pfam", "PF13853", "7tm_4" ], [ "Q9JHR7-1", "protein_xref_pfam", "PF00675", "Peptidase_M16" ], [ "Q9JHR7-1", "protein_xref_pfam", "PF05193", "Peptidase_M16_C" ], [ "Q9JHR7-1", "protein_xref_pfam", "PF16187", "Peptidase_M16_M" ], [ "Q8VF63-1", "protein_xref_pfam", "PF13853", "7tm_4" ], [ "Q8VF62-1", "protein_xref_pfam", "PF13853", "7tm_4" ], [ "Q8VF66-1", "protein_xref_pfam", "PF13853", "7tm_4" ], [ "Q8VF65-1", "protein_xref_pfam", "PF13853", "7tm_4" ], [ "Q8VF64-1", "protein_xref_pfam", "PF13853", "7tm_4" ], [ "B2RXV4-1", "protein_xref_pfam", "PF07690", "MFS_1" ], [ "E9Q3P4-1", "protein_xref_pfam", "PF10473", "CENP-F_leu_zip" ], [ "E9Q3P4-1", "protein_xref_pfam", "PF10481", "CENP-F_N" ], [ "E9Q3P4-1", "protein_xref_pfam", "PF10490", "CENP-F_C_Rb_bdg" ], [ "A0A087WRQ3-1", "protein_xref_pfam", "PF07686", "V-set" ], [ "Q9CXG9-1", "protein_xref_pfam", "PF00628", "PHD" ], [ "Q9CXG9-1", "protein_xref_pfam", "PF14061", "Mtf2_C" ], [ "Q9CXG9-1", "protein_xref_pfam", "PF18104", "Tudor_2" ], [ "Q07968-1", "protein_xref_pfam", "PF00084", "Sushi" ], [ "Q9CXG3-1", "protein_xref_pfam", "PF00076", "RRM_1" ], [ "Q9CXG3-1", "protein_xref_pfam", "PF00160", "Pro_isomerase" ], [ "B1AQ89-1", "protein_xref_pfam", "PF13885", "Keratin_B2_2" ], [ "A0A1B0GST9-1", "protein_xref_pfam", "PF11057", "Cortexin" ], [ "B1AQ85-1", "protein_xref_pfam", "PF13885", "Keratin_B2_2" ], [ "A0A1B0GST0-1", "protein_xref_pfam", "PF13853", "7tm_4" ], [ "P01942-1", "protein_xref_pfam", "PF00042", "Globin" ], [ "P03899-1", "protein_xref_pfam", "PF00507", "Oxidored_q4" ], [ "P03893-1", "protein_xref_pfam", "PF06444", "NADH_dehy_S2_C" ], [ "P03893-1", "protein_xref_pfam", "PF00361", "Proton_antipo_M" ], [ "Q9QYH9-1", "protein_xref_pfam", "PF00229", "TNF" ], [ "P52479-1", "protein_xref_pfam", "PF07145", "PAM2" ], [ "P52479-1", "protein_xref_pfam", "PF00443", "UCH" ], [ "P02762-1", "protein_xref_pfam", "PF00061", "Lipocalin" ], [ "Q9QYH6-1", "protein_xref_pfam", "PF01454", "MAGE" ], [ "Q3SXJ3-1", "protein_xref_pfam", "PF13853", "7tm_4" ], [ "O08537-1", "protein_xref_pfam", "PF12497", "ERbeta_N" ], [ "O08537-1", "protein_xref_pfam", "PF00104", "Hormone_recep" ], [ "O08537-1", "protein_xref_pfam", "PF00105", "zf-C4" ], [ "Q08AU7-1", "protein_xref_pfam", "PF01284", "MARVEL" ], [ "Q5EBH1-1", "protein_xref_pfam", "PF00788", "RA" ], [ "Q5EBH1-1", "protein_xref_pfam", "PF00130", "C1_1" ], [ "Q5EBH1-1", "protein_xref_pfam", "PF16517", "Nore1-SARAH" ], [ "A0A087WSM5-1", "protein_xref_pfam", "PF02513", "Spin-Ssty" ], [ "Q61409-1", "protein_xref_pfam", "PF00233", "PDEase_I" ], [ "A2AVK5-1", "protein_xref_pfam", "PF13853", "7tm_4" ], [ "Q80YU0-1", "protein_xref_pfam", "PF00561", "Abhydrolase_1" ], [ "Q61400-1", "protein_xref_pfam", "PF07686", "V-set" ], [ "Q61406-1", "protein_xref_pfam", "PF00084", "Sushi" ], [ "Q5SRT8-1", "protein_xref_pfam", "PF00134", "Cyclin_N" ], [ "Q5SRT8-1", "protein_xref_pfam", "PF02984", "Cyclin_C" ], [ "P70414-1", "protein_xref_pfam", "PF03160", "Calx-beta" ], [ "P70414-1", "protein_xref_pfam", "PF16494", "Na_Ca_ex_C" ], [ "P70414-1", "protein_xref_pfam", "PF01699", "Na_Ca_ex" ], [ "P70412-1", "protein_xref_pfam", "PF00431", "CUB" ], [ "P70412-1", "protein_xref_pfam", "PF00100", "Zona_pellucida" ], [ "P70419-1", "protein_xref_pfam", "PF00535", "Glycos_transf_2" ], [ "P70419-1", "protein_xref_pfam", "PF00652", "Ricin_B_lectin" ], [ "Q9EP78-1", "protein_xref_pfam", "PF00685", "Sulfotransfer_1" ], [ "Q9EP79-1", "protein_xref_pfam", "PF03402", "V1R" ], [ "Q3URK3-1", "protein_xref_pfam", "PF02008", "zf-CXXC" ], [ "Q3URK3-1", "protein_xref_pfam", "PF12851", "Tet_JBP" ], [ "Q9EP72-1", "protein_xref_pfam", "PF09430", "DUF2012" ], [ "Q9EP73-1", "protein_xref_pfam", "PF07686", "V-set" ], [ "Q9EP73-1", "protein_xref_pfam", "PF08205", "C2-set_2" ], [ "Q9EP71-1", "protein_xref_pfam", "PF12796", "Ank_2" ], [ "Q9EP75-1", "protein_xref_pfam", "PF00067", "p450" ], [ "Q3URK1-1", "protein_xref_pfam", "PF15768", "CC190" ], [ "S4R213-1", "protein_xref_pfam", "PF00144", "Beta-lactamase" ], [ "P53702-1", "protein_xref_pfam", "PF01265", "Cyto_heme_lyase" ], [ "O08911-1", "protein_xref_pfam", "PF00069", "Pkinase" ], [ "Q80WC9-1", "protein_xref_pfam", "PF00501", "AMP-binding" ], [ "Q80WC9-1", "protein_xref_pfam", "PF00550", "PP-binding" ], [ "Q80WC9-1", "protein_xref_pfam", "PF13360", "PQQ_2" ], [ "Q80WC9-1", "protein_xref_pfam", "PF13570", "PQQ_3" ], [ "O08912-1", "protein_xref_pfam", "PF00535", "Glycos_transf_2" ], [ "O08912-1", "protein_xref_pfam", "PF00652", "Ricin_B_lectin" ], [ "O08915-1", "protein_xref_pfam", "PF00254", "FKBP_C" ], [ "O08914-1", "protein_xref_pfam", "PF01425", "Amidase" ], [ "O08917-1", "protein_xref_pfam", "PF01145", "Band_7" ], [ "O08917-1", "protein_xref_pfam", "PF15975", "Flot" ], [ "Q80WC3-1", "protein_xref_pfam", "PF01426", "BAH" ], [ "O08918-1", "protein_xref_pfam", "PF00134", "Cyclin_N" ] ] }, "readme": "Name\n - Mouse UniProtKB Xref Pfam\n\nVersion\n - 1.7.13\n\nCreated on\n - 2019-03-15T16:01:50.980059\n\nModified on\n - 2020-04-10T12:42:07.520014\n\nCreated by\n - Jeet Vora [jeetvora@gwu.edu], Rahi Navelkar [rsn13@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Xavier Holmes [xavierh@email.gwu.edu]\n\nAuthors\n - Maria Martin [martin@ebi.ac.uk], Preethi Vasudev [pvasudev@ebi.ac.uk]\n\nChecksum\n - \n\nUsability Domain\n - The Mouse UniProtKB Xref Pfam contains mouse [taxid:10090] UniProtKB canonical accessions cross-referenced to Pfam database accessions/identifiers. The dataset is derived from 2019-09 UniProtKB release. If you use this dataset please provide proper attribution to EMBL-EBI-UniProtKB and GlyGen\n - Pfam is a database of protein families that includes their annotations and multiple sequence alignments generated using hidden Markov models.\n\nDescription Domain\n Keywords\n - protein family\n - Pfam\n - cross-reference\n\n Pipeline Steps\n - Step-1: The script loads the UniProtKB canonical accessions that are cross-referenced to Pfam database accessions/identifiers from the triplestore containing triples from nt file and extracts the data as a csv dataset\n\nExecution Domain\n Scripts - https://github.com/GW-HIVE/glygen-backend-integration/blob/master/pipeline/integrator/make-protein-dataset.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: uniprot-proteome-mus-musculus.nt\n URI: https://data.glygen.org/ln2data/releases/data/v-1.7.13/source/uniprot-proteome-mus-musculus.nt\n Name: mouse_protein_idmapping.csv\n URI: https://data.glygen.org/ln2data/releases/data/v-1.7.13/reviewed/mouse_protein_idmapping.csv\n Output Subdomain\n Name: mouse_protein_xref_pfam.csv\n URI: http://data.glygen.org/ln2data/releases/data/v-1.7.13/reviewed/mouse_protein_xref_pfam.csv\n Name: mouse_protein_xref_pfam.stat.csv\n URI: http://data.glygen.org/ln2data/releases/data/v-1.7.13/reviewed/mouse_protein_xref_pfam.stat.csv\n\nFields\n Name: \"uniprotkb_canonical_ac\"\n Description: \"\"\n Unique Values: \"19865\"\n Name: \"xref_label\"\n Description: \"Label/Name associated with x-ref\"\n Unique Values: \"6121\"\n Name: \"xref_id\"\n Description: \"ID of the X-ref\"\n Unique Values: \"6121\"\n Name: \"xref_key\"\n Description: \"Source key associated to the xref_id\"\n Unique Values: \"1\"", "downloadurl": "/ln2data/releases/data/v-1.7.13/reviewed/mouse_protein_xref_pfam.csv" }