{ "bcoid": "GLY_000118", "title": "Mouse UniProtKB Xref PANTHER", "description": "The Mouse UniProtKB Xref PANTHER contains mouse [taxid:10090] UniProtKB canonical accessions cross-referenced ...", "filename": "mouse_protein_xref_panther.csv", "filetype": "csv", "categories": { "species": "Mus musculus", "molecule": "Protein", "tags": "Panther cross-references", "file_type": "csv", "status": "Reviewed", "scope": "internal" }, "minitable": { "content": [ [ "Q8BH24-1...", "protein_xref..." ], [ "Q8BH26-1...", "protein_xref..." ] ], "headers": [ "uniprotkb_ca...", "xref_key..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "uniprotkb_canonical_ac" }, { "type": "string", "label": "xref_key" }, { "type": "string", "label": "xref_id" }, { "type": "string", "label": "xref_label" } ], [ "Q8BH24-1", "protein_xref_panther", "PTHR10766", "PTHR10766" ], [ "Q8BH26-1", "protein_xref_panther", "PTHR31925", "PTHR31925" ], [ "Q9CXG3-1", "protein_xref_panther", "PTHR45843", "PTHR45843" ], [ "B1AQ89-1", "protein_xref_panther", "PTHR23262", "PTHR23262" ], [ "A0A1B0GST9-1", "protein_xref_panther", "PTHR16736", "PTHR16736" ], [ "B1AQ85-1", "protein_xref_panther", "PTHR23262", "PTHR23262" ], [ "P03899-1", "protein_xref_panther", "PTHR11058", "PTHR11058" ], [ "O35153-1", "protein_xref_panther", "PTHR12791", "PTHR12791" ], [ "P02762-1", "protein_xref_panther", "PTHR11430", "PTHR11430" ], [ "Q9QYH6-1", "protein_xref_panther", "PTHR11736", "PTHR11736" ], [ "Q9QYH6-1", "protein_xref_panther", "PTHR11736:SF28", "PTHR11736:SF28" ], [ "Q5EBH1-1", "protein_xref_panther", "PTHR22738", "PTHR22738" ], [ "Q5EBH1-1", "protein_xref_panther", "PTHR22738:SF9", "PTHR22738:SF9" ], [ "A0A087WSM5-1", "protein_xref_panther", "PTHR10405", "PTHR10405" ], [ "Q5SRT8-1", "protein_xref_panther", "PTHR10177", "PTHR10177" ], [ "Q9EP79-1", "protein_xref_panther", "PTHR24062", "PTHR24062" ], [ "Q3URK3-1", "protein_xref_panther", "PTHR23358", "PTHR23358" ], [ "Q9EP72-1", "protein_xref_panther", "PTHR13605", "PTHR13605" ], [ "Q9EP71-1", "protein_xref_panther", "PTHR24129", "PTHR24129" ], [ "Q3URK1-1", "protein_xref_panther", "PTHR36871", "PTHR36871" ], [ "P53702-1", "protein_xref_panther", "PTHR12743", "PTHR12743" ], [ "O08915-1", "protein_xref_panther", "PTHR11242:SF3", "PTHR11242:SF3" ], [ "O08915-1", "protein_xref_panther", "PTHR11242", "PTHR11242" ], [ "O08914-1", "protein_xref_panther", "PTHR45847:SF3", "PTHR45847:SF3" ], [ "O08917-1", "protein_xref_panther", "PTHR13806", "PTHR13806" ], [ "O08918-1", "protein_xref_panther", "PTHR10177:SF60", "PTHR10177:SF60" ], [ "O08918-1", "protein_xref_panther", "PTHR10177", "PTHR10177" ], [ "Q80WC1-1", "protein_xref_panther", "PTHR21669:SF10", "PTHR21669:SF10" ], [ "Q91ZK0-1", "protein_xref_panther", "PTHR10812", "PTHR10812" ], [ "Q8BZM1-1", "protein_xref_panther", "PTHR15430", "PTHR15430" ], [ "Q4VC33-1", "protein_xref_panther", "PTHR12170:SF2", "PTHR12170:SF2" ], [ "Q66GT5-1", "protein_xref_panther", "PTHR46712", "PTHR46712" ], [ "Q8BTJ4-1", "protein_xref_panther", "PTHR10151:SF79", "PTHR10151:SF79" ], [ "Q99LV7-1", "protein_xref_panther", "PTHR28650", "PTHR28650" ], [ "Q3V3Q4-1", "protein_xref_panther", "PTHR12200", "PTHR12200" ], [ "Q7M729-1", "protein_xref_panther", "PTHR13869", "PTHR13869" ], [ "Q3V3Q7-1", "protein_xref_panther", "PTHR13280", "PTHR13280" ], [ "Q3UHF3-1", "protein_xref_panther", "PTHR10865:SF22", "PTHR10865:SF22" ], [ "Q3UHF3-1", "protein_xref_panther", "PTHR10865", "PTHR10865" ], [ "Q9D516-1", "protein_xref_panther", "PTHR12111", "PTHR12111" ], [ "Q9D518-1", "protein_xref_panther", "PTHR33560", "PTHR33560" ], [ "Q9D519-1", "protein_xref_panther", "PTHR12002", "PTHR12002" ], [ "Q8K2M0-1", "protein_xref_panther", "PTHR11362", "PTHR11362" ], [ "Q8K2M3-1", "protein_xref_panther", "PTHR28626", "PTHR28626" ], [ "Q8BIQ5-1", "protein_xref_panther", "PTHR45735:SF6", "PTHR45735:SF6" ], [ "O88662-1", "protein_xref_panther", "PTHR10671:SF32", "PTHR10671:SF32" ], [ "O88667-1", "protein_xref_panther", "PTHR45775:SF3", "PTHR45775:SF3" ], [ "Q9DB00-1", "protein_xref_panther", "PTHR16088:SF11", "PTHR16088:SF11" ], [ "Q9DB07-1", "protein_xref_panther", "PTHR13376", "PTHR13376" ], [ "Q9DB05-1", "protein_xref_panther", "PTHR13768", "PTHR13768" ], [ "Q8VC04-1", "protein_xref_panther", "PTHR28556", "PTHR28556" ], [ "Q8BW86-1", "protein_xref_panther", "PTHR46944", "PTHR46944" ], [ "P48076-1", "protein_xref_panther", "PTHR11716", "PTHR11716" ], [ "Q8BW88-1", "protein_xref_panther", "PTHR47014", "PTHR47014" ], [ "Q6PDM4-1", "protein_xref_panther", "PTHR35662", "PTHR35662" ], [ "Q8BGW0-1", "protein_xref_panther", "PTHR15215", "PTHR15215" ], [ "Q8BGW3-1", "protein_xref_panther", "PTHR19290:SF53", "PTHR19290:SF53" ], [ "Q6PDM2-1", "protein_xref_panther", "PTHR23147:SF44", "PTHR23147:SF44" ], [ "Q8BGW8-1", "protein_xref_panther", "PTHR15950", "PTHR15950" ], [ "Q497P3-1", "protein_xref_panther", "PTHR17149", "PTHR17149" ], [ "Q5M6W3-1", "protein_xref_panther", "PTHR10292:SF11", "PTHR10292:SF11" ], [ "Q499E0-1", "protein_xref_panther", "PTHR15564", "PTHR15564" ], [ "Q499E5-1", "protein_xref_panther", "PTHR22437", "PTHR22437" ], [ "Q499E6-1", "protein_xref_panther", "PTHR16234", "PTHR16234" ], [ "J3QK46-1", "protein_xref_panther", "PTHR31815", "PTHR31815" ], [ "A2AAE1-1", "protein_xref_panther", "PTHR31640", "PTHR31640" ], [ "Q3TNL8-1", "protein_xref_panther", "PTHR10656:SF8", "PTHR10656:SF8" ], [ "Q9QZD5-1", "protein_xref_panther", "PTHR11787", "PTHR11787" ], [ "Q3UWK9-1", "protein_xref_panther", "PTHR11431", "PTHR11431" ], [ "Q9Z275-1", "protein_xref_panther", "PTHR10174:SF200", "PTHR10174:SF200" ], [ "E9Q2C0-1", "protein_xref_panther", "PTHR15977", "PTHR15977" ], [ "L7N2D4-1", "protein_xref_panther", "PTHR24061", "PTHR24061" ], [ "Q9WVL4-1", "protein_xref_panther", "PTHR24355:SF11", "PTHR24355:SF11" ], [ "Q9WVL3-1", "protein_xref_panther", "PTHR11827:SF47", "PTHR11827:SF47" ], [ "Q9WVL1-1", "protein_xref_panther", "PTHR11753", "PTHR11753" ], [ "P56931-1", "protein_xref_panther", "PTHR12081", "PTHR12081" ], [ "L7N2D8-1", "protein_xref_panther", "PTHR24061", "PTHR24061" ], [ "Q9QUN5-1", "protein_xref_panther", "PTHR11417", "PTHR11417" ], [ "Q9QUN7-1", "protein_xref_panther", "PTHR24365:SF17", "PTHR24365:SF17" ], [ "Q9QUN9-1", "protein_xref_panther", "PTHR12113", "PTHR12113" ], [ "G3X9Y6-1", "protein_xref_panther", "PTHR11732", "PTHR11732" ], [ "Q91Z67-1", "protein_xref_panther", "PTHR14166:SF6", "PTHR14166:SF6" ], [ "Q91Z61-1", "protein_xref_panther", "PTHR24070", "PTHR24070" ], [ "Q00977-1", "protein_xref_panther", "PTHR11984", "PTHR11984" ] ] }, "readme": "Name\n - Mouse UniProtKB Xref PANTHER\n\nVersion\n - 1.7.13\n\nCreated on\n - 2019-03-15T15:06:27.574866\n\nModified on\n - 2020-04-10T12:41:35.442817\n\nCreated by\n - Jeet Vora [jeetvora@gwu.edu], Rahi Navelkar [rsn13@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Xavier Holmes [xavierh@email.gwu.edu]\n\nAuthors\n - Maria Martin [martin@ebi.ac.uk], Preethi Vasudev [pvasudev@ebi.ac.uk]\n\nChecksum\n - \n\nUsability Domain\n - The Mouse UniProtKB Xref PANTHER contains mouse [taxid:10090] UniProtKB canonical accessions cross-referenced to PANTHER database accessions/identifiers. The dataset is derived from 2019-09 UniProtKB release. If you use this dataset please provide proper attribution to EMBL-EBI-UniProtKB and GlyGen\n - The PANTHER classification system is a large curated biological database of gene/protein families and their functionally related subfamilies that can be used to classify and identify the function of gene products\n\nDescription Domain\n Keywords\n - protein family\n - PANTHER\n - cross-reference\n\n Pipeline Steps\n - Step-1: The script loads the UniProtKB canonical accessions that are cross-referenced to PANTHER database accessions/identifiers from the triplestore containing triples from nt file and extracts the data as a csv dataset\n\nExecution Domain\n Scripts - https://github.com/GW-HIVE/glygen-backend-integration/blob/master/pipeline/integrator/make-protein-dataset.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: uniprot-proteome-mus-musculus.nt\n URI: https://data.glygen.org/ln2data/releases/data/v-1.7.13/source/uniprot-proteome-mus-musculus.nt\n Name: mouse_protein_masterlist.csv\n URI: https://data.glygen.org/ln2data/releases/data/v-1.7.13/reviewed/mouse_protein_masterlist.csv\n Output Subdomain\n Name: mouse_protein_xref_panther.csv\n URI: http://data.glygen.org/ln2data/releases/data/v-1.7.13/reviewed/mouse_protein_xref_panther.csv\n Name: mouse_protein_xref_panther.stat.csv\n URI: http://data.glygen.org/ln2data/releases/data/v-1.7.13/reviewed/mouse_protein_xref_panther.stat.csv\n\nFields\n Name: \"uniprotkb_canonical_ac\"\n Description: \"\"\n Unique Values: \"9845\"\n Name: \"xref_label\"\n Description: \"Label/Name associated with x-ref\"\n Unique Values: \"6727\"\n Name: \"xref_id\"\n Description: \"ID of the X-ref\"\n Unique Values: \"6727\"\n Name: \"xref_key\"\n Description: \"Source key associated to the xref_id\"\n Unique Values: \"1\"", "downloadurl": "/ln2data/releases/data/v-1.7.13/reviewed/mouse_protein_xref_panther.csv" }