{ "bcoid": "GLY_000043", "title": "Mouse Glycosylation Sites (RCSB PDB)", "description": "The Mouse Glycosylation Sites (RCSB PDB) dataset contains mouse [taxid:10090] proteins glycosites mapped ...", "filename": "mouse_proteoform_glycosylation_sites_pdb.csv", "filetype": "csv", "categories": { "species": "Mus musculus", "molecule": "Proteoform", "tags": "Glycosylation Sites", "file_type": "csv", "status": "Reviewed", "scope": "internal" }, "minitable": { "content": [ [ "Q01705-1...", "466..." ], [ "Q01705-1...", "466..." ] ], "headers": [ "uniprotkb_ca...", "glycosylatio..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "uniprotkb_canonical_ac" }, { "type": "string", "label": "glycosylation_site_uniprotkb" }, { "type": "string", "label": "amino_acid" }, { "type": "string", "label": "saccharide" }, { "type": "string", "label": "glycosylation_type" }, { "type": "string", "label": "xref_key" }, { "type": "string", "label": "xref_id" }, { "type": "string", "label": "src_xref_key" }, { "type": "string", "label": "src_xref_id" }, { "type": "string", "label": "pdb_id" }, { "type": "string", "label": "amino_acid_chain" }, { "type": "string", "label": "glycosylation_site_pdb" }, { "type": "string", "label": "carb_name" } ], [ "Q01705-1", "466", "Thr", "", "O-linked", "protein_xref_pdb4glycosylation", "2RQZ", "protein_xref_pdb4glycosylation", "2RQZ", "2RQZ", "A", "15", "FUC" ], [ "Q01705-1", "466", "Thr", "", "O-linked", "protein_xref_pdb4glycosylation", "2RR2", "protein_xref_pdb4glycosylation", "2RR2", "2RR2", "A", "15", "FUC" ], [ "Q62011-1", "77", "Thr", "", "O-linked", "protein_xref_pdb4glycosylation", "3IET", "protein_xref_pdb4glycosylation", "3IET", "3IET", "X", "2", "A2G" ], [ "P09803-1", "580", "Thr", "", "O-linked", "protein_xref_pdb4glycosylation", "3Q2V", "protein_xref_pdb4glycosylation", "3Q2V", "3Q2V", "B", "424", "MAN" ], [ "P09803-1", "360", "Thr", "", "O-linked", "protein_xref_pdb4glycosylation", "3Q2V", "protein_xref_pdb4glycosylation", "3Q2V", "3Q2V", "B", "204", "MAN" ], [ "P09803-1", "578", "Thr", "", "O-linked", "protein_xref_pdb4glycosylation", "3Q2V", "protein_xref_pdb4glycosylation", "3Q2V", "3Q2V", "A", "422", "MAN" ], [ "P09803-1", "580", "Thr", "", "O-linked", "protein_xref_pdb4glycosylation", "3Q2V", "protein_xref_pdb4glycosylation", "3Q2V", "3Q2V", "A", "424", "MAN" ], [ "P09803-1", "582", "Thr", "", "O-linked", "protein_xref_pdb4glycosylation", "3Q2V", "protein_xref_pdb4glycosylation", "3Q2V", "3Q2V", "B", "426", "MAN" ], [ "P09803-1", "360", "Thr", "", "O-linked", "protein_xref_pdb4glycosylation", "3Q2V", "protein_xref_pdb4glycosylation", "3Q2V", "3Q2V", "A", "204", "MAN" ], [ "P09803-1", "472", "Thr", "", "O-linked", "protein_xref_pdb4glycosylation", "3Q2V", "protein_xref_pdb4glycosylation", "3Q2V", "3Q2V", "B", "316", "MAN" ], [ "P09803-1", "474", "Thr", "", "O-linked", "protein_xref_pdb4glycosylation", "3Q2V", "protein_xref_pdb4glycosylation", "3Q2V", "3Q2V", "B", "318", "MAN" ], [ "P09803-1", "578", "Thr", "", "O-linked", "protein_xref_pdb4glycosylation", "3Q2V", "protein_xref_pdb4glycosylation", "3Q2V", "3Q2V", "B", "422", "MAN" ], [ "P09803-1", "474", "Thr", "", "O-linked", "protein_xref_pdb4glycosylation", "3Q2V", "protein_xref_pdb4glycosylation", "3Q2V", "3Q2V", "A", "318", "MAN" ], [ "P09803-1", "511", "Thr", "", "O-linked", "protein_xref_pdb4glycosylation", "3Q2V", "protein_xref_pdb4glycosylation", "3Q2V", "3Q2V", "A", "355", "MAN" ], [ "P09803-1", "582", "Thr", "", "O-linked", "protein_xref_pdb4glycosylation", "3Q2V", "protein_xref_pdb4glycosylation", "3Q2V", "3Q2V", "A", "426", "MAN" ], [ "P09803-1", "472", "Thr", "", "O-linked", "protein_xref_pdb4glycosylation", "3Q2V", "protein_xref_pdb4glycosylation", "3Q2V", "3Q2V", "A", "316", "MAN" ], [ "P09803-1", "511", "Thr", "", "O-linked", "protein_xref_pdb4glycosylation", "3Q2V", "protein_xref_pdb4glycosylation", "3Q2V", "3Q2V", "B", "355", "MAN" ], [ "P15116-1", "483", "Thr", "", "O-linked", "protein_xref_pdb4glycosylation", "3Q2W", "protein_xref_pdb4glycosylation", "3Q2W", "3Q2W", "A", "324", "MAN" ], [ "P15116-1", "588", "Thr", "", "O-linked", "protein_xref_pdb4glycosylation", "3Q2W", "protein_xref_pdb4glycosylation", "3Q2W", "3Q2W", "A", "429", "MAN" ], [ "P15116-1", "481", "Thr", "", "O-linked", "protein_xref_pdb4glycosylation", "3Q2W", "protein_xref_pdb4glycosylation", "3Q2W", "3Q2W", "A", "322", "MAN" ], [ "P15116-1", "590", "Thr", "", "O-linked", "protein_xref_pdb4glycosylation", "3Q2W", "protein_xref_pdb4glycosylation", "3Q2W", "3Q2W", "A", "431", "MAN" ], [ "P15116-1", "367", "Thr", "", "O-linked", "protein_xref_pdb4glycosylation", "3Q2W", "protein_xref_pdb4glycosylation", "3Q2W", "3Q2W", "A", "208", "MAN" ], [ "P15116-1", "290", "Thr", "", "O-linked", "protein_xref_pdb4glycosylation", "3Q2W", "protein_xref_pdb4glycosylation", "3Q2W", "3Q2W", "A", "131", "MAN" ], [ "P15116-1", "365", "Thr", "", "O-linked", "protein_xref_pdb4glycosylation", "3Q2W", "protein_xref_pdb4glycosylation", "3Q2W", "3Q2W", "A", "206", "MAN" ], [ "Q91Y09-1", "239", "Thr", "", "O-linked", "protein_xref_pdb4glycosylation", "4ZPM", "protein_xref_pdb4glycosylation", "4ZPM", "4ZPM", "A", "198", "MAN" ], [ "Q91Y09-1", "239", "Thr", "", "O-linked", "protein_xref_pdb4glycosylation", "4ZPM", "protein_xref_pdb4glycosylation", "4ZPM", "4ZPM", "B", "198", "MAN" ], [ "Q91XW9-1", "225", "Thr", "", "O-linked", "protein_xref_pdb4glycosylation", "4ZPN", "protein_xref_pdb4glycosylation", "4ZPN", "4ZPN", "A", "201", "MAN" ], [ "Q91XW9-1", "225", "Thr", "", "O-linked", "protein_xref_pdb4glycosylation", "4ZPN", "protein_xref_pdb4glycosylation", "4ZPN", "4ZPN", "B", "201", "MAN" ], [ "Q91XW9-1", "225", "Thr", "", "O-linked", "protein_xref_pdb4glycosylation", "4ZPO", "protein_xref_pdb4glycosylation", "4ZPO", "4ZPO", "A", "196", "MAN" ], [ "Q91XW9-1", "225", "Thr", "", "O-linked", "protein_xref_pdb4glycosylation", "4ZPP", "protein_xref_pdb4glycosylation", "4ZPP", "4ZPP", "A", "196", "MAN" ], [ "Q91XW9-1", "225", "Thr", "", "O-linked", "protein_xref_pdb4glycosylation", "4ZPP", "protein_xref_pdb4glycosylation", "4ZPP", "4ZPP", "B", "196", "MAN" ], [ "Q91XW9-1", "225", "Thr", "", "O-linked", "protein_xref_pdb4glycosylation", "4ZPQ", "protein_xref_pdb4glycosylation", "4ZPQ", "4ZPQ", "A", "196", "MAN" ], [ "Q91XW9-1", "225", "Thr", "", "O-linked", "protein_xref_pdb4glycosylation", "4ZPQ", "protein_xref_pdb4glycosylation", "4ZPQ", "4ZPQ", "B", "196", "MAN" ], [ "Q91XW9-1", "225", "Thr", "", "O-linked", "protein_xref_pdb4glycosylation", "4ZPQ", "protein_xref_pdb4glycosylation", "4ZPQ", "4ZPQ", "C", "196", "MAN" ], [ "Q91XW9-1", "225", "Thr", "", "O-linked", "protein_xref_pdb4glycosylation", "4ZPS", "protein_xref_pdb4glycosylation", "4ZPS", "4ZPS", "A", "196", "MAN" ], [ "Q91Y13-1", "223", "Thr", "", "O-linked", "protein_xref_pdb4glycosylation", "5DZV", "protein_xref_pdb4glycosylation", "5DZV", "5DZV", "A", "194", "MAN" ], [ "Q91Y13-1", "225", "Thr", "", "O-linked", "protein_xref_pdb4glycosylation", "5DZV", "protein_xref_pdb4glycosylation", "5DZV", "5DZV", "A", "196", "MAN" ], [ "Q91Y13-1", "223", "Thr", "", "O-linked", "protein_xref_pdb4glycosylation", "5DZV", "protein_xref_pdb4glycosylation", "5DZV", "5DZV", "B", "194", "MAN" ], [ "Q91Y13-1", "225", "Thr", "", "O-linked", "protein_xref_pdb4glycosylation", "5DZV", "protein_xref_pdb4glycosylation", "5DZV", "5DZV", "B", "196", "MAN" ], [ "Q91Y13-1", "438", "Thr", "", "O-linked", "protein_xref_pdb4glycosylation", "5DZV", "protein_xref_pdb4glycosylation", "5DZV", "5DZV", "B", "409", "MAN" ], [ "O88689-1", "438", "Thr", "", "O-linked", "protein_xref_pdb4glycosylation", "5DZW", "protein_xref_pdb4glycosylation", "5DZW", "5DZW", "A", "409", "MAN" ], [ "Q91XZ4-1", "225", "Thr", "", "O-linked", "protein_xref_pdb4glycosylation", "5DZX", "protein_xref_pdb4glycosylation", "5DZX", "5DZX", "B", "197", "MAN" ], [ "Q91XZ2-1", "225", "Thr", "", "O-linked", "protein_xref_pdb4glycosylation", "5DZY", "protein_xref_pdb4glycosylation", "5DZY", "5DZY", "C", "197", "MAN" ], [ "Q91XZ2-1", "227", "Thr", "", "O-linked", "protein_xref_pdb4glycosylation", "5DZY", "protein_xref_pdb4glycosylation", "5DZY", "5DZY", "C", "199", "MAN" ], [ "Q91XZ2-1", "225", "Thr", "", "O-linked", "protein_xref_pdb4glycosylation", "5DZY", "protein_xref_pdb4glycosylation", "5DZY", "5DZY", "D", "197", "MAN" ], [ "Q91XZ2-1", "227", "Thr", "", "O-linked", "protein_xref_pdb4glycosylation", "5DZY", "protein_xref_pdb4glycosylation", "5DZY", "5DZY", "D", "199", "MAN" ], [ "Q91XZ2-1", "225", "Thr", "", "O-linked", "protein_xref_pdb4glycosylation", "5DZY", "protein_xref_pdb4glycosylation", "5DZY", "5DZY", "E", "197", "MAN" ], [ "Q91XZ2-1", "227", "Thr", "", "O-linked", "protein_xref_pdb4glycosylation", "5DZY", "protein_xref_pdb4glycosylation", "5DZY", "5DZY", "E", "199", "MAN" ], [ "Q91XZ2-1", "225", "Thr", "", "O-linked", "protein_xref_pdb4glycosylation", "5DZY", "protein_xref_pdb4glycosylation", "5DZY", "5DZY", "F", "197", "MAN" ], [ "Q91XZ2-1", "227", "Thr", "", "O-linked", "protein_xref_pdb4glycosylation", "5DZY", "protein_xref_pdb4glycosylation", "5DZY", "5DZY", "F", "199", "MAN" ], [ "Q91XZ2-1", "225", "Thr", "", "O-linked", "protein_xref_pdb4glycosylation", "5DZY", "protein_xref_pdb4glycosylation", "5DZY", "5DZY", "A", "197", "MAN" ], [ "Q91XZ2-1", "227", "Thr", "", "O-linked", "protein_xref_pdb4glycosylation", "5DZY", "protein_xref_pdb4glycosylation", "5DZY", "5DZY", "A", "199", "MAN" ], [ "Q91XZ2-1", "225", "Thr", "", "O-linked", "protein_xref_pdb4glycosylation", "5DZY", "protein_xref_pdb4glycosylation", "5DZY", "5DZY", "B", "197", "MAN" ], [ "Q91XZ2-1", "227", "Thr", "", "O-linked", "protein_xref_pdb4glycosylation", "5DZY", "protein_xref_pdb4glycosylation", "5DZY", "5DZY", "B", "199", "MAN" ], [ "Q91XW9-1", "225", "Thr", "", "O-linked", "protein_xref_pdb4glycosylation", "5SZL", "protein_xref_pdb4glycosylation", "5SZL", "5SZL", "C", "197", "MAN" ], [ "Q91XW9-1", "225", "Thr", "", "O-linked", "protein_xref_pdb4glycosylation", "5SZL", "protein_xref_pdb4glycosylation", "5SZL", "5SZL", "D", "197", "MAN" ], [ "Q91XW9-1", "225", "Thr", "", "O-linked", "protein_xref_pdb4glycosylation", "5SZL", "protein_xref_pdb4glycosylation", "5SZL", "5SZL", "A", "197", "MAN" ], [ "Q91XW9-1", "225", "Thr", "", "O-linked", "protein_xref_pdb4glycosylation", "5SZL", "protein_xref_pdb4glycosylation", "5SZL", "5SZL", "B", "197", "MAN" ], [ "Q91XW9-1", "225", "Thr", "", "O-linked", "protein_xref_pdb4glycosylation", "5SZM", "protein_xref_pdb4glycosylation", "5SZM", "5SZM", "A", "196", "MAN" ], [ "Q91XX9-1", "226", "Thr", "", "O-linked", "protein_xref_pdb4glycosylation", "5SZN", "protein_xref_pdb4glycosylation", "5SZN", "5SZN", "A", "197", "MAN" ], [ "Q91XW9-1", "225", "Thr", "", "O-linked", "protein_xref_pdb4glycosylation", "5SZO", "protein_xref_pdb4glycosylation", "5SZO", "5SZO", "A", "195", "MAN" ], [ "Q91XW9-1", "225", "Thr", "", "O-linked", "protein_xref_pdb4glycosylation", "5SZO", "protein_xref_pdb4glycosylation", "5SZO", "5SZO", "B", "195", "MAN" ], [ "Q91XW9-1", "225", "Thr", "", "O-linked", "protein_xref_pdb4glycosylation", "5SZP", "protein_xref_pdb4glycosylation", "5SZP", "5SZP", "A", "195", "MAN" ], [ "Q91XW9-1", "225", "Thr", "", "O-linked", "protein_xref_pdb4glycosylation", "5SZP", "protein_xref_pdb4glycosylation", "5SZP", "5SZP", "B", "195", "MAN" ], [ "Q99PJ1-1", "170", "Thr", "", "O-linked", "protein_xref_pdb4glycosylation", "6CV7", "protein_xref_pdb4glycosylation", "6CV7", "6CV7", "A", "144", "MAN" ], [ "Q99PJ1-1", "251", "Thr", "", "O-linked", "protein_xref_pdb4glycosylation", "6CV7", "protein_xref_pdb4glycosylation", "6CV7", "6CV7", "A", "225", "MAN" ], [ "Q99PJ1-1", "253", "Thr", "", "O-linked", "protein_xref_pdb4glycosylation", "6CV7", "protein_xref_pdb4glycosylation", "6CV7", "6CV7", "A", "227", "MAN" ], [ "Q99PJ1-1", "255", "Thr", "", "O-linked", "protein_xref_pdb4glycosylation", "6CV7", "protein_xref_pdb4glycosylation", "6CV7", "6CV7", "A", "229", "MAN" ], [ "Q99PJ1-1", "257", "Thr", "", "O-linked", "protein_xref_pdb4glycosylation", "6CV7", "protein_xref_pdb4glycosylation", "6CV7", "6CV7", "A", "231", "MAN" ], [ "O35744-1", "233", "Tyr", "", "O-linked", "protein_xref_pdb4glycosylation", "1E9L", "protein_xref_pdb4glycosylation", "1E9L", "1E9L", "A", "212", "GCS" ], [ "P01901-1", "178", "Arg", "", "N-linked", "protein_xref_pdb4glycosylation", "1BQH", "protein_xref_pdb4glycosylation", "1BQH", "1BQH", "D", "157", "NAG" ], [ "Q8BGN3-1", "351", "Arg", "", "N-linked", "protein_xref_pdb4glycosylation", "5EGE", "protein_xref_pdb4glycosylation", "5EGE", "5EGE", "C", "351", "FUL" ], [ "P36368-1", "119", "Asn", "", "N-linked", "protein_xref_pdb4glycosylation", "1AO5", "protein_xref_pdb4glycosylation", "1AO5", "1AO5", "A", "95", "NAG" ], [ "P36368-1", "119", "Asn", "", "N-linked", "protein_xref_pdb4glycosylation", "1AO5", "protein_xref_pdb4glycosylation", "1AO5", "1AO5", "B", "95", "NAG" ], [ "P01731-1", "69", "Asn", "", "N-linked", "protein_xref_pdb4glycosylation", "1BQH", "protein_xref_pdb4glycosylation", "1BQH", "1BQH", "H", "42", "NAG" ], [ "P01731-1", "69", "Asn", "", "N-linked", "protein_xref_pdb4glycosylation", "1BQH", "protein_xref_pdb4glycosylation", "1BQH", "1BQH", "I", "42", "NAG" ], [ "P01731-1", "69", "Asn", "", "N-linked", "protein_xref_pdb4glycosylation", "1BQH", "protein_xref_pdb4glycosylation", "1BQH", "1BQH", "K", "42", "NAG" ], [ "P01731-1", "69", "Asn", "", "N-linked", "protein_xref_pdb4glycosylation", "1BQH", "protein_xref_pdb4glycosylation", "1BQH", "1BQH", "G", "42", "NDG" ], [ "P40223-1", "129", "Asn", "", "N-linked", "protein_xref_pdb4glycosylation", "1CD9", "protein_xref_pdb4glycosylation", "1CD9", "1CD9", "B", "10", "NAG" ], [ "P40223-1", "129", "Asn", "", "N-linked", "protein_xref_pdb4glycosylation", "1CD9", "protein_xref_pdb4glycosylation", "1CD9", "1CD9", "D", "10", "NAG" ], [ "P01901-1", "107", "Asn", "", "N-linked", "protein_xref_pdb4glycosylation", "1FZJ", "protein_xref_pdb4glycosylation", "1FZJ", "1FZJ", "A", "86", "NAG" ], [ "P01901-1", "197", "Asn", "", "N-linked", "protein_xref_pdb4glycosylation", "1FZJ", "protein_xref_pdb4glycosylation", "1FZJ", "1FZJ", "A", "176", "NAG" ], [ "P01901-1", "197", "Asn", "", "N-linked", "protein_xref_pdb4glycosylation", "1FZK", "protein_xref_pdb4glycosylation", "1FZK", "1FZK", "A", "176", "NAG" ], [ "P01901-1", "107", "Asn", "", "N-linked", "protein_xref_pdb4glycosylation", "1FZK", "protein_xref_pdb4glycosylation", "1FZK", "1FZK", "A", "86", "NAG" ] ] }, "readme": "Name\n - Mouse Glycosylation Sites (RCSB PDB)\n\nVersion\n - 1.7.13\n\nCreated on\n - 2019-01-23T17:21:05.910839\n\nModified on\n - 2020-04-10T12:35:07.324192\n\nCreated by\n - Jeet Vora [jeetvora@gwu.edu], Rahi Navelkar [rsn13@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Xavier Holmes [xavierh@email.gwu.edu]\n\nAuthors\n - Jasmine Young [jasmine@rcsb.rutgers.edu], Chenghua Shao [chenghua@rcsb.rutgers.edu]\n\nChecksum\n - \n\nUsability Domain\n - The Mouse Glycosylation Sites (RCSB PDB) dataset contains mouse [taxid:10090] proteins glycosites mapped from the associated RCSB PDB Id's using SIFTS database (https://www.ebi.ac.uk/pdbe/docs/sifts/). The glycosylation data (PDB ID, GlycoSite, Chain ID, Sugar (first link)) was retrieved from RCSB group. [www.rcsb.org, Nucleic Acids Research, 28: 235-242.(https://www.ncbi.nlm.nih.gov/pmc/articles/PMC102472/)].\n\nDescription Domain\n Keywords\n - PDB\n - glycosylation sites\n - amino acid\n - amino acid chain\n\n Pipeline Steps\n - Step-1: The script extracts the PDB IDs and PDB glycosite from the input .tsv files and maps it to the corresponding UniProtKB accessions and position using the coordinate file downloaded from the SIFTS database using the formula:(SP_BEG-RES_BEG)+ PDB-Position)]. The script also validates the UniProtKB glycosite (amino acid + position) with the corresponding fasta sequences downloaded from UniProtKB.\n\nExecution Domain\n Scripts - https://github.com/GW-HIVE/glygen-backend-integration/blob/master/pipeline/integrator/make-proteoform-dataset.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: N-linked-ARG-details\n URI: https://data.glygen.org/ln2data/releases/data/v-1.7.13/source/N-linked-ARG-details\n Name: O-linked-ASP-details\n URI: https://data.glygen.org/ln2data/releases/data/v-1.7.13/source/O-linked-ASP-details\n Name: O-linked-GLU-details\n URI: https://data.glygen.org/ln2data/releases/data/v-1.7.13/source/O-linked-GLU-details\n Name: O-linked-SER-details\n URI: https://data.glygen.org/ln2data/releases/data/v-1.7.13/source/O-linked-SER-details\n Name: O-linked-THR-details\n URI: https://data.glygen.org/ln2data/releases/data/v-1.7.13/source/O-linked-THR-details\n Name: O-linked-TYR-details\n URI: https://data.glygen.org/ln2data/releases/data/v-1.7.13/source/O-linked-TYR-details\n Name: mouse_protein_masterlist.csv\n URI: https://data.glygen.org/ln2data/releases/data/v-1.7.13/reviewed/mouse_protein_masterlist.csv\n Name: mouse_protein_canonicalsequences.fasta\n URI: https://data.glygen.org/ln2data/releases/data/v-1.7.13/source/mouse_protein_canonicalsequences.fasta\n Name: pdb_chain_uniprot_2018_11_8_11_44_50.csv\n URI: https://data.glygen.org/ln2data/releases/data/v-1.7.13/source/pdb_chain_uniprot_2018_11_8_11_44_50.csv\n Output Subdomain\n Name: mouse_proteoform_glycosylation_sites_pdb.csv\n URI: http://data.glygen.org/ln2data/releases/data/v-1.7.13/reviewed/mouse_proteoform_glycosylation_sites_pdb.csv\n Name: mouse_proteoform_glycosylation_sites_pdb.stat.csv\n URI: http://data.glygen.org/ln2data/releases/data/v-1.7.13/reviewed/mouse_proteoform_glycosylation_sites_pdb.stat.csv\n\nFields\n Name: \"uniprotkb_canonical_ac\"\n Description: \"\"\n Unique Values: \"63\"\n Name: \"glycosylation_site_uniprotkb\"\n Description: \"Site on the protein sequence of the UniProtKB entry where glycosylation is observed\"\n Unique Values: \"130\"\n Name: \"xref_id\"\n Description: \"ID of the X-ref\"\n Unique Values: \"233\"\n Name: \"glycosylation_type\"\n Description: \"Type of glycosylation (N/O/C/S linked glycosylation)\"\n Unique Values: \"2\"\n Name: \"amino_acid\"\n Description: \"Three letter abbreviation code of the amino acid\"\n Unique Values: \"5\"\n Name: \"src_xref_key\"\n Description: \"Source Xref key\"\n Unique Values: \"1\"\n Name: \"pdb_id\"\n Description: \"PDB ID associated with the UniProtKB accession.\"\n Unique Values: \"233\"\n Name: \"src_xref_id\"\n Description: \"Source X-ref ID\"\n Unique Values: \"233\"\n Name: \"saccharide\"\n Description: \"Sugar\"\n Unique Values: \"1\"\n Name: \"amino_acid_chain\"\n Description: \"Amino acid chain in pdb\"\n Unique Values: \"15\"\n Name: \"carb_name\"\n Description: \"carbohydrate name\"\n Unique Values: \"7\"\n Name: \"glycosylation_site_pdb\"\n Description: \"Site on the protein sequence of the PDB entry where glycosylation is observed\"\n Unique Values: \"127\"\n Name: \"xref_key\"\n Description: \"Source key associated to the xref_id\"\n Unique Values: \"1\"", "downloadurl": "/ln2data/releases/data/v-1.7.13/reviewed/mouse_proteoform_glycosylation_sites_pdb.csv" }