{ "bcoid": "GLY_000450", "title": "SARS-CoV2 UniProtKB Xref InterPro", "description": "The SARS coronavirus (SARS-CoV-2 or 2019-nCov) UniProtKB Xref InterPro contains sarscov2 [taxid:2697049] ...", "filename": "sarscov2_protein_xref_interpro.csv", "filetype": "csv", "categories": { "species": "SARS coronavirus (SARS-CoV-2 or 2019-nCoV)", "molecule": "Protein", "tags": "Interpro cross-references", "file_type": "csv", "status": "Reviewed", "scope": "internal" }, "minitable": { "content": [ [ "P0DTD2-1...", "protein_xref..." ], [ "P0DTD2-1...", "protein_xref..." ] ], "headers": [ "uniprotkb_ca...", "xref_key..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "uniprotkb_canonical_ac" }, { "type": "string", "label": "xref_key" }, { "type": "string", "label": "xref_id" }, { "type": "string", "label": "xref_label" } ], [ "P0DTD2-1", "protein_xref_interpro", "IPR018542", "Protein_9b_SARS-like" ], [ "P0DTD2-1", "protein_xref_interpro", "IPR037223", "Protein_9b_SARS" ], [ "P0DTD1-1", "protein_xref_interpro", "IPR027417", "P-loop_NTPase" ], [ "P0DTD1-1", "protein_xref_interpro", "IPR029063", "SAM-dependent_MTases" ], [ "P0DTD1-1", "protein_xref_interpro", "IPR009003", "Peptidase_S1_PA" ], [ "P0DTD1-1", "protein_xref_interpro", "IPR002589", "Macro_dom" ], [ "P0DTD1-1", "protein_xref_interpro", "IPR037227", "EndoU-like" ], [ "P0DTD1-1", "protein_xref_interpro", "IPR008740", "Peptidase_C30_CoV" ], [ "P0DTD1-1", "protein_xref_interpro", "IPR009461", "NSP16_CoV-like" ], [ "P0DTD1-1", "protein_xref_interpro", "IPR009466", "NSP11_CoV" ], [ "P0DTD1-1", "protein_xref_interpro", "IPR009469", "RNA_pol_N_coronovir" ], [ "P0DTD1-1", "protein_xref_interpro", "IPR013016", "Peptidase_C16_CoV" ], [ "P0DTD1-1", "protein_xref_interpro", "IPR014822", "NSP9_CoV" ], [ "P0DTD1-1", "protein_xref_interpro", "IPR014828", "NSP7_CoV" ], [ "P0DTD1-1", "protein_xref_interpro", "IPR014829", "NSP8_CoV-like" ], [ "P0DTD1-1", "protein_xref_interpro", "IPR018995", "RNA_synth_NSP10_CoV" ], [ "P0DTD1-1", "protein_xref_interpro", "IPR021590", "NSP1_bCoV" ], [ "P0DTD1-1", "protein_xref_interpro", "IPR022733", "DPUP_SUD_C_bCoV" ], [ "P0DTD1-1", "protein_xref_interpro", "IPR024358", "NSP3_N_bCoV" ], [ "P0DTD1-1", "protein_xref_interpro", "IPR024375", "NSP3_bCoV" ], [ "P0DTD1-1", "protein_xref_interpro", "IPR032505", "NSP4_C_CoV" ], [ "P0DTD1-1", "protein_xref_interpro", "IPR032592", "NSP3_NAR_bCoV" ], [ "P0DTD1-1", "protein_xref_interpro", "IPR036333", "NSP10_sf_CoV" ], [ "P0DTD1-1", "protein_xref_interpro", "IPR036499", "NSP9_sf_CoV" ], [ "P0DTD1-1", "protein_xref_interpro", "IPR037204", "NSP7_sf_CoV" ], [ "P0DTD1-1", "protein_xref_interpro", "IPR037230", "NSP8_sf_CoV" ], [ "P0DTD1-1", "protein_xref_interpro", "IPR038030", "NSP1_sf_bCoV" ], [ "P0DTD1-1", "protein_xref_interpro", "IPR038083", "NSP3A-like" ], [ "P0DTD1-1", "protein_xref_interpro", "IPR038123", "NSP4_C_sf_CoV" ], [ "P0DTD1-1", "protein_xref_interpro", "IPR038166", "NSP3_PL2pro_sf_CoV" ], [ "P0DTD1-1", "protein_xref_interpro", "IPR038400", "NSP3_SUD-M_sf_bCoV" ], [ "P0DTD1-1", "protein_xref_interpro", "IPR042515", "NSP15_N_CoV" ], [ "P0DTD1-1", "protein_xref_interpro", "IPR042570", "NAR_sf" ], [ "P0DTD1-1", "protein_xref_interpro", "IPR041679", "DNA2/NAM7-like_AAA" ], [ "P0DTD1-1", "protein_xref_interpro", "IPR043174", "NSP15_middle_sf" ], [ "P0DTD1-1", "protein_xref_interpro", "IPR043177", "PLpro_N_sf_CoV" ], [ "P0DTD1-1", "protein_xref_interpro", "IPR043178", "PLpro_thumb_sf_CoV" ], [ "P0DTD1-1", "protein_xref_interpro", "IPR043472", "Macro_dom-like" ], [ "P0DTD1-1", "protein_xref_interpro", "IPR043476", "Yro2-like_7TM" ], [ "P0DTD1-1", "protein_xref_interpro", "IPR043477", "Peptidase_C30_dom3_CoV" ], [ "P0DTD1-1", "protein_xref_interpro", "IPR043478", "NSP3_SUD-N_bCoV" ], [ "P0DTD1-1", "protein_xref_interpro", "IPR043502", "DNA/RNA_pol_sf" ], [ "P0DTD1-1", "protein_xref_interpro", "IPR043503", "PLpro_palm_finger_dom_CoV" ], [ "P0DTD1-1", "protein_xref_interpro", "IPR043504", "Peptidase_S1_PA_chymotrypsin" ], [ "P0DTD3-1", "protein_xref_interpro", "IPR035113", "Protein_14_SARS-like" ], [ "P0DTC7-1", "protein_xref_interpro", "IPR014888", "NS7A_CoV" ], [ "P0DTC7-1", "protein_xref_interpro", "IPR036495", "NS7A_sf_CoV" ], [ "P0DTC6-1", "protein_xref_interpro", "IPR022736", "NS6_bCoV" ], [ "P0DTC5-1", "protein_xref_interpro", "IPR002574", "M_CoV" ], [ "P0DTC4-1", "protein_xref_interpro", "IPR003873", "E_protein_CoV" ], [ "P0DTC3-1", "protein_xref_interpro", "IPR024407", "Protein_3a_bCoV" ], [ "P0DTC2-1", "protein_xref_interpro", "IPR002552", "Spike_S2_CoV" ], [ "P0DTC2-1", "protein_xref_interpro", "IPR018548", "Spike_rcpt-bd_bCoV" ], [ "P0DTC2-1", "protein_xref_interpro", "IPR027400", "S_HR2_CoV" ], [ "P0DTC2-1", "protein_xref_interpro", "IPR036326", "Spike_rcpt-bd_sf_CoV" ], [ "P0DTC2-1", "protein_xref_interpro", "IPR043473", "S2_sf_CoV" ], [ "P0DTC1-1", "protein_xref_interpro", "IPR009003", "Peptidase_S1_PA" ], [ "P0DTC1-1", "protein_xref_interpro", "IPR002589", "Macro_dom" ], [ "P0DTC1-1", "protein_xref_interpro", "IPR008740", "Peptidase_C30_CoV" ], [ "P0DTC1-1", "protein_xref_interpro", "IPR013016", "Peptidase_C16_CoV" ], [ "P0DTC1-1", "protein_xref_interpro", "IPR014822", "NSP9_CoV" ], [ "P0DTC1-1", "protein_xref_interpro", "IPR014828", "NSP7_CoV" ], [ "P0DTC1-1", "protein_xref_interpro", "IPR014829", "NSP8_CoV-like" ], [ "P0DTC1-1", "protein_xref_interpro", "IPR018995", "RNA_synth_NSP10_CoV" ], [ "P0DTC1-1", "protein_xref_interpro", "IPR021590", "NSP1_bCoV" ], [ "P0DTC1-1", "protein_xref_interpro", "IPR022733", "DPUP_SUD_C_bCoV" ], [ "P0DTC1-1", "protein_xref_interpro", "IPR024358", "NSP3_N_bCoV" ], [ "P0DTC1-1", "protein_xref_interpro", "IPR024375", "NSP3_bCoV" ], [ "P0DTC1-1", "protein_xref_interpro", "IPR032505", "NSP4_C_CoV" ], [ "P0DTC1-1", "protein_xref_interpro", "IPR032592", "NSP3_NAR_bCoV" ], [ "P0DTC1-1", "protein_xref_interpro", "IPR036333", "NSP10_sf_CoV" ], [ "P0DTC1-1", "protein_xref_interpro", "IPR036499", "NSP9_sf_CoV" ], [ "P0DTC1-1", "protein_xref_interpro", "IPR037204", "NSP7_sf_CoV" ], [ "P0DTC1-1", "protein_xref_interpro", "IPR037230", "NSP8_sf_CoV" ], [ "P0DTC1-1", "protein_xref_interpro", "IPR038030", "NSP1_sf_bCoV" ], [ "P0DTC1-1", "protein_xref_interpro", "IPR038083", "NSP3A-like" ], [ "P0DTC1-1", "protein_xref_interpro", "IPR038123", "NSP4_C_sf_CoV" ], [ "P0DTC1-1", "protein_xref_interpro", "IPR038166", "NSP3_PL2pro_sf_CoV" ], [ "P0DTC1-1", "protein_xref_interpro", "IPR038400", "NSP3_SUD-M_sf_bCoV" ], [ "P0DTC1-1", "protein_xref_interpro", "IPR042570", "NAR_sf" ], [ "P0DTC1-1", "protein_xref_interpro", "IPR043177", "PLpro_N_sf_CoV" ], [ "P0DTC1-1", "protein_xref_interpro", "IPR043178", "PLpro_thumb_sf_CoV" ], [ "P0DTC1-1", "protein_xref_interpro", "IPR043472", "Macro_dom-like" ], [ "P0DTC1-1", "protein_xref_interpro", "IPR043476", "Yro2-like_7TM" ] ] }, "readme": "Name\n - SARS-CoV2 UniProtKB Xref InterPro\n\nVersion\n - 1.7.10\n\nCreated on\n - 2020-04-03T12:27:47.989476\n\nModified on\n - 2020-04-10T12:29:38.496338\n\nCreated by\n - Jeet Vora [jeetvora@gwu.edu], Rahi Navelkar [rsn13@gwu.edu], Robel Kahsay [rykahsay@gwu.edu]\n\nAuthors\n - Maria Martin [martin@ebi.ac.uk], Preethi Vasudev [pvasudev@ebi.ac.uk]\n\nChecksum\n - \n\nUsability Domain\n - The SARS coronavirus (SARS-CoV-2 or 2019-nCov) UniProtKB Xref InterPro contains sarscov2 [taxid:2697049] UniProtKB canonical accessions cross-referenced to InterPro database accessions/identifiers. The dataset is derived from 2020-01 UniProtKB release. If you use this dataset please provide proper attribution to EMBL-EBI-UniProtKB and GlyGen\n - InterPro is a database of protein families, domains and functional sites in which identifiable features found in known proteins can be applied to new protein sequences in order to functionally characterise them.\n\nDescription Domain\n Keywords\n - protein family\n - protein domain\n - protein functional site\n - InterPro\n - cross-reference\n\n Pipeline Steps\n - Step-1: The script loads the UniProtKB accessions that are cross-referenced to InterPro database accessions/identifiers from the triplestore containing triples from nt file and maps to the UniProtKB canonical accessions and extracts the data as a csv dataset\n\nExecution Domain\n Scripts - https://github.com/GW-HIVE/glygen-backend-integration/blob/master/pipeline/integrator/make-protein-dataset.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: uniprot-proteome-sars-cov-2.nt\n URI: https://data.glygen.org/ln2wwwdata/source/uniprot-proteome-sars-cov-2.nt\n Name: sarscov2_protein_masterlist.csv\n URI: https://data.glygen.org/ln2wwwdata/reviewed/sarscov2_protein_masterlist.csv\n Output Subdomain\n Name: sarscov2_protein_xref_interpro.csv\n URI: http://data.glygen.org/ln2wwwdata/reviewed/sarscov2_protein_xref_interpro.csv\n Name: sarscov2_protein_xref_interpro.stat.csv\n URI: http://data.glygen.org/ln2wwwdata/reviewed/sarscov2_protein_xref_interpro.stat.csv\n\nFields\n Name: \"uniprotkb_canonical_ac\"\n Description: \"\"\n Unique Values: \"13\"\n Name: \"xref_label\"\n Description: \"Label/Name associated with x-ref\"\n Unique Values: \"61\"\n Name: \"xref_id\"\n Description: \"ID of the X-ref\"\n Unique Values: \"61\"\n Name: \"xref_key\"\n Description: \"Source key associated to the xref_id\"\n Unique Values: \"1\"", "downloadurl": "/ln2data/releases/data/v-1.7.10/reviewed/sarscov2_protein_xref_interpro.csv" }