{
    "bcoid": "GLY_000431",
    "title": "SARS-CoV1 Protein Information (NCBI RefSeq)",
    "description": "The SARS coronavirus (SARS-CoV-1) Protein Information (NCBI RefSeq) dataset contains sarscov1 [taxid:694009] ...",
    "filename": "sarscov1_protein_info_refseq.csv",
    "filetype": "csv",
    "categories": {
        "species": "SARS coronavirus (SARS-CoV-1)",
        "molecule": "Protein",
        "tags": "Protein Information",
        "file_type": "csv",
        "status": "Reviewed",
        "scope": "internal"
    },
    "minitable": {
        "content": [
            [
                "P59632-1...",
                "NP_828852.2..."
            ],
            [
                "P59594-1...",
                "NP_828851.1..."
            ]
        ],
        "headers": [
            "uniprotkb_ca...",
            "p_refseq_ac_..."
        ],
        "colwidth": [
            "40%",
            "20%"
        ]
    },
    "sampledata": {
        "type": "table",
        "data": [
            [
                {
                    "type": "string",
                    "label": "uniprotkb_canonical_ac"
                },
                {
                    "type": "string",
                    "label": "p_refseq_ac_best_match"
                },
                {
                    "type": "string",
                    "label": "refseq_protein_name"
                },
                {
                    "type": "string",
                    "label": "refseq_protein_length"
                },
                {
                    "type": "string",
                    "label": "refseq_protein_summary"
                }
            ],
            [
                "P59632-1",
                "NP_828852.2",
                "hypothetical protein sars3a",
                "274",
                ""
            ],
            [
                "P59594-1",
                "NP_828851.1",
                "E2 glycoprotein precursor",
                "1255",
                ""
            ],
            [
                "P59633-1",
                "NP_828853.1",
                "hypothetical protein sars3b",
                "154",
                ""
            ],
            [
                "P59637-1",
                "NP_828854.1",
                "protein E",
                "76",
                ""
            ],
            [
                "P59596-1",
                "NP_828855.1",
                "matrix protein",
                "221",
                ""
            ],
            [
                "P59634-1",
                "NP_828856.1",
                "hypothetical protein sars6",
                "63",
                ""
            ],
            [
                "P59635-1",
                "NP_828857.1",
                "hypothetical protein sars7a",
                "122",
                ""
            ],
            [
                "P59595-1",
                "NP_828858.1",
                "nucleocapsid protein",
                "422",
                ""
            ],
            [
                "P59636-1",
                "NP_828859.1",
                "hypothetical protein sars9b",
                "98",
                ""
            ],
            [
                "Q7TFA1-1",
                "NP_849175.1",
                "hypothetical protein sars7b",
                "44",
                ""
            ],
            [
                "Q7TFA0-1",
                "NP_849176.1",
                "hypothetical protein sars8a",
                "39",
                ""
            ],
            [
                "Q80H93-1",
                "NP_849177.1",
                "hypothetical protein sars8b",
                "84",
                ""
            ]
        ]
    },
    "readme": "Name\n   - SARS-CoV1 Protein Information (NCBI RefSeq)\n\nVersion\n   - 1.7.10\n\nCreated on\n  - 2020-04-03T10:41:29.856591\n\nModified on\n   - 2020-04-09T18:44:15.204965\n\nCreated by\n   - Jeet Vora [jeetvora@gwu.edu], Rahi Navelkar [rsn13@gwu.edu], Robel Kahsay [rykahsay@gwu.edu]\n\nAuthors\n   - \n\nChecksum\n   - \n\nUsability Domain\n   - The SARS coronavirus (SARS-CoV-1) Protein Information (NCBI RefSeq) dataset contains sarscov1 [taxid:694009] protein information such as protein accession, name, length and protein function summary from NCBI RefSeq database.  The dataset is derived from NCBI RefSeq Release 96, September 9, 2019. If you use this dataset please provide proper attribution to NCBI RefSeq and GlyGen\n\nDescription Domain\n   Keywords\n   - protein information\n   - protein length\n   - NCBI RefSeq\n   - protein summary\n\n   Pipeline Steps\n   - Step-1: The script parses the NCBI RefSeq gpff files to extract the accession, length, protein summary and then maps the NCBI RefSeq accesion to the UniProtKB Canonical accessions\n\nExecution Domain\n   Scripts   - https://github.com/GW-HIVE/glygen-backend-integration/blob/master/pipeline/integrator/make-protein-dataset.py\n\n\n   Software Prerequisites\n      Name: Python\n      Version: 2.7.5\n      URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n   Input Subdomain\n      Name: refseq_protein_all_viral.gpff\n      URI: https://data.glygen.org/ln2wwwdata/source/refseq_protein_all_viral.gpff\n      Name: sarscov1_protein_info_refseq.csv\n      URI: https://data.glygen.org/ln2wwwdata/reviewed/sarscov1_protein_info_refseq.csv\n   Output Subdomain\n      Name: sarscov1_protein_info_refseq.csv\n      URI: http://data.glygen.org/ln2wwwdata/reviewed/sarscov1_protein_info_refseq.csv\n      Name: sarscov1_protein_info_refseq.stat.csv\n      URI: http://data.glygen.org/ln2wwwdata/reviewed/sarscov1_protein_info_refseq.stat.csv\n\nFields\n      Name: \"refseq_protein_summary\"\n     Description: \"Function of the protein in NCBI RefSeq database\"\n      Unique Values: \"1\"\n      Name: \"uniprotkb_canonical_ac\"\n     Description: \"\"\n      Unique Values: \"12\"\n      Name: \"p_refseq_ac_best_match\"\n     Description: \"Best match NCBI RefSeq protein accession to UniProtKB canonical accession\"\n      Unique Values: \"12\"\n      Name: \"refseq_protein_name\"\n     Description: \"Name of the protein in NCBI RefSeq database\"\n      Unique Values: \"12\"\n      Name: \"refseq_protein_length\"\n     Description: \"Length of the protein in NCBI RefSeq database\"\n      Unique Values: \"12\"",
    "downloadurl": "/ln2data/releases/data/v-1.7.10/reviewed/sarscov1_protein_info_refseq.csv"
}