{ "bcoid": "GLY_000274", "title": "Human Phosphorylation Sites (UniProtKB)", "description": "The Human Phosphorylation Sites (UniProtKB) dataset contains human [taxid:9606] UniProtKB canonical accessions ...", "filename": "human_proteoform_phosphorylation_sites_uniprotkb.csv", "filetype": "csv", "categories": { "species": "Homo sapiens", "molecule": "Proteoform", "tags": "Phosphorylation Sites", "file_type": "csv", "status": "Reviewed", "scope": "internal" }, "minitable": { "content": [ [ "P00519-1...", "977..." ], [ "P00519-1...", "781..." ] ], "headers": [ "uniprotkb_ca...", "phosphorylat..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "uniprotkb_canonical_ac" }, { "type": "string", "label": "phosphorylation_site_uniprotkb" }, { "type": "string", "label": "amino_acid" }, { "type": "string", "label": "kinase_uniprotkb_canonical_ac" }, { "type": "string", "label": "kinase_gene_name" }, { "type": "string", "label": "xref_key" }, { "type": "string", "label": "xref_id" }, { "type": "string", "label": "src_xref_key" }, { "type": "string", "label": "src_xref_id" }, { "type": "string", "label": "phosphorylated_residue" }, { "type": "string", "label": "phosphorylation_annotation" }, { "type": "string", "label": "eco_id" } ], [ "P00519-1", "977", "Ser", "", "", "protein_xref_uniprotkb", "P00519", "protein_xref_uniprotkb", "P00519", "Phosphoserine", "Phosphoserine", "" ], [ "P00519-1", "781", "Thr", "", "", "protein_xref_uniprotkb", "P00519", "protein_xref_uniprotkb", "P00519", "Phosphothreonine", "Phosphothreonine", "" ], [ "P00519-1", "50", "Ser", "", "", "protein_xref_uniprotkb", "P00519", "protein_xref_uniprotkb", "P00519", "Phosphoserine", "Phosphoserine", "" ], [ "P00519-1", "917", "Ser", "", "", "protein_xref_uniprotkb", "P00519", "protein_xref_uniprotkb", "P00519", "Phosphoserine", "Phosphoserine", "" ], [ "P00519-1", "618", "Ser", "", "", "protein_xref_uniprotkb", "P00519", "protein_xref_uniprotkb", "P00519", "Phosphoserine", "Phosphoserine; by PAK2", "" ], [ "P00519-1", "229", "Ser", "", "", "protein_xref_uniprotkb", "P00519", "protein_xref_uniprotkb", "P00519", "Phosphoserine", "Phosphoserine", "" ], [ "P00519-1", "735", "Thr", "", "", "protein_xref_uniprotkb", "P00519", "protein_xref_uniprotkb", "P00519", "Phosphothreonine", "Phosphothreonine", "" ], [ "P00519-1", "814", "Thr", "", "", "protein_xref_uniprotkb", "P00519", "protein_xref_uniprotkb", "P00519", "Phosphothreonine", "Phosphothreonine", "" ], [ "P00519-1", "559", "Ser", "", "", "protein_xref_uniprotkb", "P00519", "protein_xref_uniprotkb", "P00519", "Phosphoserine", "Phosphoserine", "" ], [ "P00519-1", "253", "Tyr", "", "", "protein_xref_uniprotkb", "P00519", "protein_xref_uniprotkb", "P00519", "Phosphotyrosine", "Phosphotyrosine", "" ], [ "P00519-1", "413", "Tyr", "", "", "protein_xref_uniprotkb", "P00519", "protein_xref_uniprotkb", "P00519", "Phosphotyrosine", "Phosphotyrosine", "" ], [ "P00519-1", "718", "Ser", "", "", "protein_xref_uniprotkb", "P00519", "protein_xref_uniprotkb", "P00519", "Phosphoserine", "Phosphoserine", "" ], [ "P00519-1", "852", "Thr", "", "", "protein_xref_uniprotkb", "P00519", "protein_xref_uniprotkb", "P00519", "Phosphothreonine", "Phosphothreonine", "" ], [ "P00519-1", "257", "Tyr", "", "", "protein_xref_uniprotkb", "P00519", "protein_xref_uniprotkb", "P00519", "Phosphotyrosine", "Phosphotyrosine", "" ], [ "P00519-1", "446", "Ser", "", "", "protein_xref_uniprotkb", "P00519", "protein_xref_uniprotkb", "P00519", "Phosphoserine", "Phosphoserine", "" ], [ "P00519-1", "683", "Ser", "", "", "protein_xref_uniprotkb", "P00519", "protein_xref_uniprotkb", "P00519", "Phosphoserine", "Phosphoserine", "" ], [ "P00519-1", "844", "Thr", "", "", "protein_xref_uniprotkb", "P00519", "protein_xref_uniprotkb", "P00519", "Phosphothreonine", "Phosphothreonine", "" ], [ "P00519-1", "620", "Ser", "", "", "protein_xref_uniprotkb", "P00519", "protein_xref_uniprotkb", "P00519", "Phosphoserine", "Phosphoserine", "" ], [ "P00519-1", "855", "Ser", "", "", "protein_xref_uniprotkb", "P00519", "protein_xref_uniprotkb", "P00519", "Phosphoserine", "Phosphoserine", "" ], [ "P00519-1", "619", "Ser", "", "", "protein_xref_uniprotkb", "P00519", "protein_xref_uniprotkb", "P00519", "Phosphoserine", "Phosphoserine; by PAK2", "" ], [ "P00519-1", "751", "Thr", "", "", "protein_xref_uniprotkb", "P00519", "protein_xref_uniprotkb", "P00519", "Phosphothreonine", "Phosphothreonine", "" ], [ "P00519-1", "823", "Thr", "", "", "protein_xref_uniprotkb", "P00519", "protein_xref_uniprotkb", "P00519", "Phosphothreonine", "Phosphothreonine", "" ], [ "P00519-1", "659", "Ser", "", "", "protein_xref_uniprotkb", "P00519", "protein_xref_uniprotkb", "P00519", "Phosphoserine", "Phosphoserine", "" ], [ "P01009-1", "383", "Ser", "", "", "protein_xref_uniprotkb", "P01009", "protein_xref_uniprotkb", "P01009", "Phosphoserine", "Phosphoserine", "" ], [ "P01009-1", "38", "Ser", "", "", "protein_xref_uniprotkb", "P01009", "protein_xref_uniprotkb", "P01009", "Phosphoserine", "Phosphoserine; by FAM20C", "" ], [ "O95477-1", "1296", "Ser", "", "", "protein_xref_uniprotkb", "O95477", "protein_xref_uniprotkb", "O95477", "Phosphoserine", "Phosphoserine", "" ], [ "P21399-1", "628", "Thr", "", "", "protein_xref_uniprotkb", "P21399", "protein_xref_uniprotkb", "P21399", "Phosphothreonine", "Phosphothreonine", "" ], [ "P25054-1", "2270", "Ser", "", "", "protein_xref_uniprotkb", "P25054", "protein_xref_uniprotkb", "P25054", "Phosphoserine", "Phosphoserine", "" ], [ "P25054-1", "2283", "Ser", "", "", "protein_xref_uniprotkb", "P25054", "protein_xref_uniprotkb", "P25054", "Phosphoserine", "Phosphoserine", "" ], [ "P25054-1", "1774", "Ser", "", "", "protein_xref_uniprotkb", "P25054", "protein_xref_uniprotkb", "P25054", "Phosphoserine", "Phosphoserine", "" ], [ "P25054-1", "1863", "Ser", "", "", "protein_xref_uniprotkb", "P25054", "protein_xref_uniprotkb", "P25054", "Phosphoserine", "Phosphoserine", "" ], [ "P25054-1", "1395", "Ser", "", "", "protein_xref_uniprotkb", "P25054", "protein_xref_uniprotkb", "P25054", "Phosphoserine", "Phosphoserine", "" ], [ "P25054-1", "2125", "Ser", "", "", "protein_xref_uniprotkb", "P25054", "protein_xref_uniprotkb", "P25054", "Phosphoserine", "Phosphoserine", "" ], [ "P25054-1", "1438", "Thr", "", "", "protein_xref_uniprotkb", "P25054", "protein_xref_uniprotkb", "P25054", "Phosphothreonine", "Phosphothreonine", "" ], [ "P25054-1", "2674", "Ser", "", "", "protein_xref_uniprotkb", "P25054", "protein_xref_uniprotkb", "P25054", "Phosphoserine", "Phosphoserine", "" ], [ "P25054-1", "2473", "Ser", "", "", "protein_xref_uniprotkb", "P25054", "protein_xref_uniprotkb", "P25054", "Phosphoserine", "Phosphoserine", "" ], [ "P25054-1", "744", "Ser", "", "", "protein_xref_uniprotkb", "P25054", "protein_xref_uniprotkb", "P25054", "Phosphoserine", "Phosphoserine", "" ], [ "P25054-1", "987", "Ser", "", "", "protein_xref_uniprotkb", "P25054", "protein_xref_uniprotkb", "P25054", "Phosphoserine", "Phosphoserine", "" ], [ "P25054-1", "2789", "Ser", "", "", "protein_xref_uniprotkb", "P25054", "protein_xref_uniprotkb", "P25054", "Phosphoserine", "Phosphoserine", "" ], [ "P25054-1", "2129", "Ser", "", "", "protein_xref_uniprotkb", "P25054", "protein_xref_uniprotkb", "P25054", "Phosphoserine", "Phosphoserine", "" ], [ "P25054-1", "1864", "Ser", "", "", "protein_xref_uniprotkb", "P25054", "protein_xref_uniprotkb", "P25054", "Phosphoserine", "Phosphoserine", "" ], [ "P25054-1", "2260", "Ser", "", "", "protein_xref_uniprotkb", "P25054", "protein_xref_uniprotkb", "P25054", "Phosphoserine", "Phosphoserine", "" ], [ "P25054-1", "1360", "Ser", "", "", "protein_xref_uniprotkb", "P25054", "protein_xref_uniprotkb", "P25054", "Phosphoserine", "Phosphoserine", "" ], [ "P25054-1", "107", "Ser", "", "", "protein_xref_uniprotkb", "P25054", "protein_xref_uniprotkb", "P25054", "Phosphoserine", "Phosphoserine", "" ], [ "P25054-1", "2569", "Ser", "", "", "protein_xref_uniprotkb", "P25054", "protein_xref_uniprotkb", "P25054", "Phosphoserine", "Phosphoserine", "" ], [ "P25054-1", "2130", "Ser", "", "", "protein_xref_uniprotkb", "P25054", "protein_xref_uniprotkb", "P25054", "Phosphoserine", "Phosphoserine", "" ], [ "P25054-1", "780", "Ser", "", "", "protein_xref_uniprotkb", "P25054", "protein_xref_uniprotkb", "P25054", "Phosphoserine", "Phosphoserine", "" ], [ "P25054-1", "2679", "Thr", "", "", "protein_xref_uniprotkb", "P25054", "protein_xref_uniprotkb", "P25054", "Phosphothreonine", "Phosphothreonine", "" ], [ "P25054-1", "1371", "Ser", "", "", "protein_xref_uniprotkb", "P25054", "protein_xref_uniprotkb", "P25054", "Phosphoserine", "Phosphoserine", "" ], [ "P25054-1", "1971", "Ser", "", "", "protein_xref_uniprotkb", "P25054", "protein_xref_uniprotkb", "P25054", "Phosphoserine", "Phosphoserine", "" ], [ "P25054-1", "1385", "Ser", "", "", "protein_xref_uniprotkb", "P25054", "protein_xref_uniprotkb", "P25054", "Phosphoserine", "Phosphoserine", "" ], [ "P25054-1", "2088", "Ser", "", "", "protein_xref_uniprotkb", "P25054", "protein_xref_uniprotkb", "P25054", "Phosphoserine", "Phosphoserine", "" ], [ "P25054-1", "2535", "Ser", "", "", "protein_xref_uniprotkb", "P25054", "protein_xref_uniprotkb", "P25054", "Phosphoserine", "Phosphoserine", "" ], [ "P25054-1", "2710", "Ser", "", "", "protein_xref_uniprotkb", "P25054", "protein_xref_uniprotkb", "P25054", "Phosphoserine", "Phosphoserine", "" ], [ "P25054-1", "908", "Ser", "", "", "protein_xref_uniprotkb", "P25054", "protein_xref_uniprotkb", "P25054", "Phosphoserine", "Phosphoserine", "" ], [ "P25054-1", "111", "Ser", "", "", "protein_xref_uniprotkb", "P25054", "protein_xref_uniprotkb", "P25054", "Phosphoserine", "Phosphoserine", "" ], [ "P25054-1", "1042", "Ser", "", "", "protein_xref_uniprotkb", "P25054", "protein_xref_uniprotkb", "P25054", "Phosphoserine", "Phosphoserine", "" ], [ "P25054-1", "2132", "Ser", "", "", "protein_xref_uniprotkb", "P25054", "protein_xref_uniprotkb", "P25054", "Phosphoserine", "Phosphoserine", "" ], [ "P25054-1", "2093", "Ser", "", "", "protein_xref_uniprotkb", "P25054", "protein_xref_uniprotkb", "P25054", "Phosphoserine", "Phosphoserine", "" ], [ "P25054-1", "1038", "Ser", "", "", "protein_xref_uniprotkb", "P25054", "protein_xref_uniprotkb", "P25054", "Phosphoserine", "Phosphoserine", "" ], [ "P25054-1", "1973", "Ser", "", "", "protein_xref_uniprotkb", "P25054", "protein_xref_uniprotkb", "P25054", "Phosphoserine", "Phosphoserine", "" ], [ "P25054-1", "748", "Ser", "", "", "protein_xref_uniprotkb", "P25054", "protein_xref_uniprotkb", "P25054", "Phosphoserine", "Phosphoserine", "" ], [ "P25054-1", "2724", "Ser", "", "", "protein_xref_uniprotkb", "P25054", "protein_xref_uniprotkb", "P25054", "Phosphoserine", "Phosphoserine", "" ], [ "P25054-1", "1392", "Ser", "", "", "protein_xref_uniprotkb", "P25054", "protein_xref_uniprotkb", "P25054", "Phosphoserine", "Phosphoserine", "" ], [ "P25054-1", "2671", "Ser", "", "", "protein_xref_uniprotkb", "P25054", "protein_xref_uniprotkb", "P25054", "Phosphoserine", "Phosphoserine", "" ], [ "P25054-1", "1567", "Ser", "", "", "protein_xref_uniprotkb", "P25054", "protein_xref_uniprotkb", "P25054", "Phosphoserine", "Phosphoserine", "" ], [ "P25054-1", "2151", "Thr", "", "", "protein_xref_uniprotkb", "P25054", "protein_xref_uniprotkb", "P25054", "Phosphothreonine", "Phosphothreonine", "" ], [ "P25054-1", "1861", "Ser", "", "", "protein_xref_uniprotkb", "P25054", "protein_xref_uniprotkb", "P25054", "Phosphoserine", "Phosphoserine", "" ], [ "O96018-1", "11", "Ser", "", "", "protein_xref_uniprotkb", "O96018", "protein_xref_uniprotkb", "O96018", "Phosphoserine", "Phosphoserine", "" ], [ "O96018-1", "171", "Ser", "", "", "protein_xref_uniprotkb", "O96018", "protein_xref_uniprotkb", "O96018", "Phosphoserine", "Phosphoserine", "" ], [ "O96018-1", "372", "Ser", "", "", "protein_xref_uniprotkb", "O96018", "protein_xref_uniprotkb", "O96018", "Phosphoserine", "Phosphoserine", "" ], [ "Q9NWB6-1", "266", "Ser", "", "", "protein_xref_uniprotkb", "Q9NWB6", "protein_xref_uniprotkb", "Q9NWB6", "Phosphoserine", "Phosphoserine", "" ], [ "Q9NWB6-1", "60", "Ser", "", "", "protein_xref_uniprotkb", "Q9NWB6", "protein_xref_uniprotkb", "Q9NWB6", "Phosphoserine", "Phosphoserine", "" ], [ "Q9NWB6-1", "61", "Thr", "", "", "protein_xref_uniprotkb", "Q9NWB6", "protein_xref_uniprotkb", "Q9NWB6", "Phosphothreonine", "Phosphothreonine", "" ], [ "Q9NWB6-1", "58", "Ser", "", "", "protein_xref_uniprotkb", "Q9NWB6", "protein_xref_uniprotkb", "Q9NWB6", "Phosphoserine", "Phosphoserine", "" ], [ "Q9NWB6-1", "77", "Ser", "", "", "protein_xref_uniprotkb", "Q9NWB6", "protein_xref_uniprotkb", "Q9NWB6", "Phosphoserine", "Phosphoserine", "" ], [ "Q9NWB6-1", "76", "Ser", "", "", "protein_xref_uniprotkb", "Q9NWB6", "protein_xref_uniprotkb", "Q9NWB6", "Phosphoserine", "Phosphoserine", "" ], [ "P46379-1", "1081", "Ser", "", "", "protein_xref_uniprotkb", "P46379", "protein_xref_uniprotkb", "P46379", "Phosphoserine", "Phosphoserine", "" ], [ "P46379-1", "973", "Ser", "", "", "protein_xref_uniprotkb", "P46379", "protein_xref_uniprotkb", "P46379", "Phosphoserine", "Phosphoserine", "" ], [ "P46379-1", "113", "Ser", "", "", "protein_xref_uniprotkb", "P46379", "protein_xref_uniprotkb", "P46379", "Phosphoserine", "Phosphoserine", "" ], [ "P46379-1", "350", "Thr", "", "", "protein_xref_uniprotkb", "P46379", "protein_xref_uniprotkb", "P46379", "Phosphothreonine", "Phosphothreonine", "" ], [ "P46379-1", "1117", "Ser", "", "", "protein_xref_uniprotkb", "P46379", "protein_xref_uniprotkb", "P46379", "Phosphoserine", "Phosphoserine", "" ], [ "P46379-1", "117", "Thr", "", "", "protein_xref_uniprotkb", "P46379", "protein_xref_uniprotkb", "P46379", "Phosphothreonine", "Phosphothreonine", "" ], [ "P46379-1", "1053", "Thr", "", "", "protein_xref_uniprotkb", "P46379", "protein_xref_uniprotkb", "P46379", "Phosphothreonine", "Phosphothreonine", "" ] ] }, "readme": "Name\n - Human Phosphorylation Sites (UniProtKB)\n\nVersion\n - 1.7.10\n\nCreated on\n - 2019-09-06T14:06:39.000407\n\nModified on\n - 2020-04-10T11:46:19.167448\n\nCreated by\n - Jeet Vora [jeetvora@gwu.edu], Rahi Navelkar [rsn13@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Xavier Holmes [xavierh@email.gwu.edu]\n\nAuthors\n - Maria Martin [martin@ebi.ac.uk], Preethi Vasudev [pvasudev@ebi.ac.uk]\n\nChecksum\n - \n\nUsability Domain\n - The Human Phosphorylation Sites (UniProtKB) dataset contains human [taxid:9606] UniProtKB canonical accessions with information on reported and predicted phosphoryation sites with evidence in UniProtKB database. The dataset is derived from 2019-09 UniProtKB release. If you use this dataset please provide proper attribution to EMBL-EBI-UniProtKB and GlyGen\n\nDescription Domain\n Keywords\n - phosphoryation Sites\n - ptm processing\n - UniProtKB\n\n Pipeline Steps\n - Step-1: The script loads the phosphorylation information from the triplestore conatining triples from the nt file and extracts as a csv dataset\n\nExecution Domain\n Scripts - https://github.com/GW-HIVE/glygen-backend-integration/blob/master/pipeline/integrator/make-proteoform-dataset.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: uniprot-proteome-homo-sapiens.nt\n URI: https://data.glygen.org/ln2wwwdata/source/uniprot-proteome-homo-sapiens.nt\n Name: human_protein_masterlist.csv\n URI: https://data.glygen.org/ln2wwwdata/reviewed/human_protein_masterlist.csv\n Output Subdomain\n Name: human_proteoform_phosphorylation_sites_uniprotkb.csv\n URI: http://data.glygen.org/ln2wwwdata/reviewed/human_proteoform_phosphorylation_sites_uniprotkb.csv\n Name: human_proteoform_phosphorylation_sites_uniprotkb.stat.csv\n URI: http://data.glygen.org/ln2wwwdata/reviewed/human_proteoform_phosphorylation_sites_uniprotkb.stat.csv\n\nFields\n Name: \"uniprotkb_canonical_ac\"\n Description: \"\"\n Unique Values: \"7966\"\n Name: \"phosphorylation_site_uniprotkb\"\n Description: \"Site on the protein sequence of the UniProtKB entry where phosphorylation is observed\"\n Unique Values: \"2930\"\n Name: \"xref_id\"\n Description: \"ID of the X-ref\"\n Unique Values: \"7977\"\n Name: \"phosphorylation_annotation\"\n Description: \"The phosphorylation annotation in UniProtKB that provides more context and description of a phosphorylation event on a protein.\"\n Unique Values: \"663\"\n Name: \"kinase_gene_name\"\n Description: \"\"\n Unique Values: \"1\"\n Name: \"phosphorylated_residue\"\n Description: \"The amino acid that is modified by phosphorylation\"\n Unique Values: \"4\"\n Name: \"kinase_uniprotkb_canonical_ac\"\n Description: \"The UniProtKB canonical accession for the kinase enzyme that is phosphorylating the protein\"\n Unique Values: \"1\"\n Name: \"amino_acid\"\n Description: \"Three letter abbreviation code of the amino acid\"\n Unique Values: \"4\"\n Name: \"src_xref_key\"\n Description: \"Source Xref key\"\n Unique Values: \"1\"\n Name: \"src_xref_id\"\n Description: \"Source X-ref ID\"\n Unique Values: \"7977\"\n Name: \"eco_id\"\n Description: \"Evidence & Conclusion Ontology (ECO) identifier\"\n Unique Values: \"1\"\n Name: \"xref_key\"\n Description: \"Source key associated to the xref_id\"\n Unique Values: \"1\"", "downloadurl": "/ln2data/releases/data/v-1.7.10/reviewed/human_proteoform_phosphorylation_sites_uniprotkb.csv" }