{ "bcoid": "GLY_000139", "title": "Mouse Proteoform Citations (UniCarbKB)", "description": "The Mouse Proteoform Citations (UniCarbKB) contains mouse [taxid:10090] publication information of glycoproteins ...", "filename": "mouse_proteoform_citations_unicarbkb.csv", "filetype": "csv", "categories": { "species": "Mus musculus", "file_type": "csv", "status": "Reviewed", "scope": "internal" }, "minitable": { "content": [ [ "Q09163-1...", "G01614ZM..." ], [ "P04925-1...", "..." ] ], "headers": [ "uniprotkb_ca...", "glytoucan_ac..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "uniprotkb_canonical_ac" }, { "type": "string", "label": "glytoucan_ac" }, { "type": "string", "label": "title" }, { "type": "string", "label": "journal_name" }, { "type": "string", "label": "publication_date" }, { "type": "string", "label": "authors" }, { "type": "string", "label": "xref_key" }, { "type": "string", "label": "xref_id" }, { "type": 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chromatography/electrospray mass spectrometry and exoglycosidase digestions.", "Biochemistry", "1999 Apr 13", "Stimson E, Hope J, Chong A, Burlingame AL", "protein_xref_pubmed", "10200178", "protein_xref_unicarbkb", "P04925" ], [ "P04925-1", "G26896YH", "Site-specific characterization of the N-linked glycans of murine prion protein by high-performance liquid chromatography/electrospray mass spectrometry and exoglycosidase digestions.", "Biochemistry", "1999 Apr 13", "Stimson E, Hope J, Chong A, Burlingame AL", "protein_xref_pubmed", "10200178", "protein_xref_unicarbkb", "P04925" ], [ "P04925-1", "G35687VS", "Site-specific characterization of the N-linked glycans of murine prion protein by high-performance liquid chromatography/electrospray mass spectrometry and exoglycosidase digestions.", "Biochemistry", "1999 Apr 13", "Stimson E, Hope J, Chong A, Burlingame AL", "protein_xref_pubmed", "10200178", "protein_xref_unicarbkb", "P04925" ], [ "P04925-1", "G15791TK", "Site-specific characterization of the N-linked glycans of murine prion protein by high-performance liquid chromatography/electrospray mass spectrometry and exoglycosidase digestions.", "Biochemistry", "1999 Apr 13", "Stimson E, Hope J, Chong A, Burlingame AL", "protein_xref_pubmed", "10200178", "protein_xref_unicarbkb", "P04925" ], [ "P04925-1", "G33785ND", "Site-specific characterization of the N-linked glycans of murine prion protein by high-performance liquid chromatography/electrospray mass spectrometry and exoglycosidase digestions.", "Biochemistry", "1999 Apr 13", "Stimson E, Hope J, Chong A, Burlingame AL", "protein_xref_pubmed", "10200178", "protein_xref_unicarbkb", "P04925" ], [ "P04925-1", "G43549OX", "Site-specific characterization of the N-linked glycans of murine prion protein by high-performance liquid chromatography/electrospray mass spectrometry and exoglycosidase digestions.", "Biochemistry", "1999 Apr 13", "Stimson E, Hope J, Chong A, Burlingame AL", "protein_xref_pubmed", "10200178", "protein_xref_unicarbkb", "P04925" ], [ "P04925-1", "G94373HA", "Site-specific characterization of the N-linked glycans of murine prion protein by high-performance liquid chromatography/electrospray mass spectrometry and exoglycosidase digestions.", "Biochemistry", "1999 Apr 13", "Stimson E, Hope J, Chong A, Burlingame AL", "protein_xref_pubmed", "10200178", "protein_xref_unicarbkb", "P04925" ], [ "P04925-1", "G63046OH", "Site-specific characterization of the N-linked glycans of murine prion protein by high-performance liquid chromatography/electrospray mass spectrometry and exoglycosidase digestions.", "Biochemistry", "1999 Apr 13", "Stimson E, Hope J, Chong A, Burlingame AL", "protein_xref_pubmed", "10200178", "protein_xref_unicarbkb", "P04925" ], [ "P17439-1", "", "High throughput quantitative glycomics and glycoform-focused proteomics of murine dermis and epidermis.", "Molecular & cellular proteomics : MCP", "2005 Dec", "Uematsu R, Furukawa J, Nakagawa H, Shinohara Y, Deguchi K, Monde K, Nishimura S", "protein_xref_pubmed", "16170054", "protein_xref_unicarbkb", "P17439" ], [ "P04925-1", "G71071YT", "Site-specific characterization of the N-linked glycans of murine prion protein by high-performance liquid chromatography/electrospray mass spectrometry and exoglycosidase digestions.", "Biochemistry", "1999 Apr 13", "Stimson E, Hope J, Chong A, Burlingame AL", "protein_xref_pubmed", "10200178", "protein_xref_unicarbkb", "P04925" ], [ "P04925-1", "G22137OG", "Site-specific characterization of the N-linked glycans of murine prion protein by high-performance liquid chromatography/electrospray mass spectrometry and exoglycosidase digestions.", "Biochemistry", "1999 Apr 13", "Stimson E, Hope J, Chong A, Burlingame AL", "protein_xref_pubmed", "10200178", "protein_xref_unicarbkb", "P04925" ], [ "P55850-1", "", "High throughput quantitative glycomics and glycoform-focused proteomics of murine dermis and epidermis.", "Molecular & cellular proteomics : MCP", "2005 Dec", "Uematsu R, Furukawa J, Nakagawa H, Shinohara Y, Deguchi K, Monde K, Nishimura S", "protein_xref_pubmed", "16170054", "protein_xref_unicarbkb", "P55850" ], [ "O09164-1", "G99610EG", "N-Glycosylation profiling of recombinant mouse extracellular superoxide dismutase produced in Chinese hamster ovary cells.", "Glycoconjugate journal", "2011 May", "Korekane H, Korekane A, Yamaguchi Y, Kato M, Miyamoto Y, Matsumoto A, Hasegawa T, Suzuki K, Taniguchi N, Ookawara T", "protein_xref_pubmed", "21573946", "protein_xref_unicarbkb", "O09164" ], [ "P04925-1", "G39945EK", "Site-specific characterization of the N-linked glycans of murine prion protein by high-performance liquid chromatography/electrospray mass spectrometry and exoglycosidase digestions.", "Biochemistry", "1999 Apr 13", "Stimson E, Hope J, Chong A, Burlingame AL", "protein_xref_pubmed", "10200178", "protein_xref_unicarbkb", "P04925" ], [ "Q8C1C1-1", "", "High throughput quantitative glycomics and glycoform-focused proteomics of murine dermis and epidermis.", "Molecular & cellular proteomics : MCP", "2005 Dec", "Uematsu R, Furukawa J, Nakagawa H, Shinohara Y, Deguchi K, Monde K, Nishimura S", "protein_xref_pubmed", "16170054", "protein_xref_unicarbkb", "Q8C1C1" ], [ "Q8VCI0-1", "", "High throughput quantitative glycomics and glycoform-focused proteomics of murine dermis and epidermis.", "Molecular & cellular proteomics : MCP", "2005 Dec", "Uematsu R, Furukawa J, Nakagawa H, Shinohara Y, Deguchi K, Monde K, Nishimura S", "protein_xref_pubmed", "16170054", "protein_xref_unicarbkb", "Q8VCI0" ], [ "P35918-1", "G80920RR", "Site-Specific N-Glycosylation of Endothelial Cell Receptor Tyrosine Kinase VEGFR-2.", "Journal of proteome research", "2017 Feb 3", "Chandler KB, Leon DR, Meyer RD, Rahimi N, Costello CE", "protein_xref_pubmed", "27966990", "protein_xref_unicarbkb", "P35918" ], [ "P35918-1", "G62595EF", "Site-Specific N-Glycosylation of Endothelial Cell Receptor Tyrosine Kinase VEGFR-2.", "Journal of proteome research", "2017 Feb 3", "Chandler KB, Leon DR, Meyer RD, Rahimi N, Costello CE", "protein_xref_pubmed", "27966990", "protein_xref_unicarbkb", "P35918" ], [ "P35918-1", "G31852PQ", "Site-Specific N-Glycosylation of Endothelial Cell Receptor Tyrosine Kinase VEGFR-2.", "Journal of proteome research", "2017 Feb 3", "Chandler KB, Leon DR, Meyer RD, Rahimi N, Costello CE", "protein_xref_pubmed", "27966990", "protein_xref_unicarbkb", "P35918" ], [ "P35918-1", "G62765YT", "Site-Specific N-Glycosylation of Endothelial Cell Receptor Tyrosine Kinase VEGFR-2.", "Journal of proteome research", "2017 Feb 3", "Chandler KB, Leon DR, Meyer RD, Rahimi N, Costello CE", "protein_xref_pubmed", "27966990", "protein_xref_unicarbkb", "P35918" ], [ "P35918-1", "G09197ZW", "Site-Specific N-Glycosylation of Endothelial Cell Receptor Tyrosine Kinase VEGFR-2.", "Journal of proteome research", "2017 Feb 3", "Chandler KB, Leon DR, Meyer RD, Rahimi N, Costello CE", "protein_xref_pubmed", "27966990", "protein_xref_unicarbkb", "P35918" ], [ "P35918-1", "G22018FP", "Site-Specific N-Glycosylation of Endothelial Cell Receptor Tyrosine Kinase VEGFR-2.", "Journal of proteome research", "2017 Feb 3", "Chandler KB, Leon DR, Meyer RD, Rahimi N, Costello CE", "protein_xref_pubmed", "27966990", "protein_xref_unicarbkb", "P35918" ], [ "P35918-1", "G27126ED", "Site-Specific N-Glycosylation of Endothelial Cell Receptor Tyrosine Kinase VEGFR-2.", "Journal of proteome research", "2017 Feb 3", "Chandler KB, Leon DR, Meyer RD, Rahimi N, Costello CE", "protein_xref_pubmed", "27966990", "protein_xref_unicarbkb", "P35918" ], [ "P35918-1", "G58001LT", "Site-Specific N-Glycosylation of Endothelial Cell Receptor Tyrosine Kinase VEGFR-2.", "Journal of proteome research", "2017 Feb 3", "Chandler KB, Leon DR, Meyer RD, Rahimi N, Costello CE", "protein_xref_pubmed", "27966990", "protein_xref_unicarbkb", "P35918" ], [ "P35918-1", "G02815KT", "Site-Specific N-Glycosylation of Endothelial Cell Receptor Tyrosine Kinase VEGFR-2.", "Journal of proteome research", "2017 Feb 3", "Chandler KB, Leon DR, Meyer RD, Rahimi N, Costello CE", "protein_xref_pubmed", "27966990", "protein_xref_unicarbkb", "P35918" ] ] }, "readme": "Name\n - Mouse Proteoform Citations (UniCarbKB)\n\nVersion\n - 1.7.10\n\nCreated on\n - 2019-04-16T16:44:35.331041\n\nModified on\n - 2020-04-10T12:44:36.872060\n\nCreated by\n - Jeet Vora [jeetvora@gwu.edu], Rahi Navelkar [rsn13@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Xavier Holmes [xavierh@email.gwu.edu]\n\nAuthors\n - Maria Martin [martin@ebi.ac.uk], Preethi Vasudev [pvasudev@ebi.ac.uk]\n\nChecksum\n - \n\nUsability Domain\n - The Mouse Proteoform Citations (UniCarbKB) contains mouse [taxid:10090] publication information of glycoproteins from UniCarbKB. The script accesses the NCBI ENTREZ infrastructure to retrieve the publication information of the given PMID from UniCarbKB. . The dataset is contributed by UniCarbKB and processed by GlyGen. If you use this dataset please provide proper attribution to UniCarbKB and GlyGen [UniCarbKB - https://academic.oup.com/nar/article/42/D1/D215/1052197 ,https://doi.org/10.1093/nar/gkt1128]\n\nDescription Domain\n Keywords\n - PMID\n - journal\n - citations\n - authors\n - UniCarbKB\n - PubMed\n\n Pipeline Steps\n - Step-1: The script parses the input file for PMIDs and accesses the NCBI Entrez infrastructure to download the publication information of the corresponding PMIDs\n\nExecution Domain\n Scripts - https://github.com/GW-HIVE/glygen-backend-integration/blob/master/pipeline/integrator/make-proteoform-dataset.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: mouse_proteoform_glycosylation_sites_unicarbkb.csv\n URI: https://data.glygen.org/ln2wwwdata/reviewed/mouse_proteoform_glycosylation_sites_unicarbkb.csv\n Output Subdomain\n Name: mouse_proteoform_citations_unicarbkb.csv\n URI: http://data.glygen.org/ln2wwwdata/reviewed/mouse_proteoform_citations_unicarbkb.csv\n Name: mouse_proteoform_citations_unicarbkb.stat.csv\n URI: http://data.glygen.org/ln2wwwdata/reviewed/mouse_proteoform_citations_unicarbkb.stat.csv\n\nFields\n Name: \"uniprotkb_canonical_ac\"\n Description: \"\"\n Unique Values: \"19\"\n Name: \"xref_id\"\n Description: \"ID of the X-ref\"\n Unique Values: \"6\"\n Name: \"title\"\n Description: \"Title of the published article in the journal\"\n Unique Values: \"6\"\n Name: \"src_xref_key\"\n Description: \"Source Xref key\"\n Unique Values: \"1\"\n Name: \"src_xref_id\"\n Description: \"Source X-ref ID\"\n Unique Values: \"19\"\n Name: \"journal_name\"\n Description: \"The name of the journal in which the article is published\"\n Unique Values: \"5\"\n Name: \"authors\"\n Description: \"NA\"\n Unique Values: \"6\"\n Name: \"publication_date\"\n Description: \"Contains the full date on which the issue of the journal was published. Sourced from MEDLINE/PubMed data element(fields) description.\"\n Unique Values: \"6\"\n Name: \"glytoucan_ac\"\n Description: \"Unique accession assigned to the registered glycan structure in GlyTouCan database\"\n Unique Values: \"72\"\n Name: \"xref_key\"\n Description: \"Source key associated to the xref_id\"\n Unique Values: \"1\"", "downloadurl": "/ln2data/releases/data/v-1.7.10/reviewed/mouse_proteoform_citations_unicarbkb.csv" }