{ "bcoid": "GLY_000103", "title": "Mouse UniProtKB Xref MGI", "description": "The Mouse UniProtKB Xref MGI contains mouse [taxid:10090] UniProtKB canonical accessions cross-referenced ...", "filename": "mouse_protein_xref_mgi.csv", "filetype": "csv", "categories": { "species": "Mus musculus", "molecule": "Protein", "tags": "Mgi cross-references", "file_type": "csv", "status": "Reviewed", "scope": "internal" }, "minitable": { "content": [ [ "Q8BH24-1...", "protein_xref..." ], [ "Q8BH27-1...", "protein_xref..." ] ], "headers": [ "uniprotkb_ca...", "xref_key..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "uniprotkb_canonical_ac" }, { "type": "string", "label": "xref_key" }, { "type": "string", "label": "xref_id" }, { "type": "string", "label": "xref_label" } ], [ "Q8BH24-1", "protein_xref_mgi", "2139220", "Tm9sf4" ], [ "Q8BH27-1", "protein_xref_mgi", "1918264", "Megf9" ], [ "Q8BH26-1", "protein_xref_mgi", "2443862", "Tmem251" ], [ "Q8VF69-1", "protein_xref_mgi", "3030057", "Olfr223" ], [ "Q9JHR7-1", "protein_xref_mgi", "96412", "Ide" ], [ "Q8VF63-1", "protein_xref_mgi", "3030715", "Olfr881" ], [ "Q8VF62-1", "protein_xref_mgi", "3030711", "Olfr877" ], [ "Q8VF66-1", "protein_xref_mgi", "3030303", "Olfr469" ], [ "Q8VF65-1", "protein_xref_mgi", "3030304", "Olfr470" ], [ "Q8VF64-1", "protein_xref_mgi", "3030717", "Olfr883" ], [ "B2RXV4-1", "protein_xref_mgi", "2444881", "Flvcr1" ], [ "E9Q3P4-1", "protein_xref_mgi", "1313302", "Cenpf" ], [ "A0A087WRQ3-1", "protein_xref_mgi", "3651476", "Trav1" ], [ "Q9CXG9-1", "protein_xref_mgi", "1921266", "Phf19" ], [ "Q07968-1", "protein_xref_mgi", "88379", "F13b" ], [ "A5H0M4-1", "protein_xref_mgi", "1918202", "Poteg" ], [ "Q9CXG3-1", "protein_xref_mgi", "1914668", "Ppil4" ], [ "B1AQ89-1", "protein_xref_mgi", "3651823", "Gm11555" ], [ "A0A1B0GST9-1", "protein_xref_mgi", "3780284", "Gm2115" ], [ "B1AQ87-1", "protein_xref_mgi", "3651811", "Gm14190" ], [ "B1AQ85-1", "protein_xref_mgi", "1915923", "Krtap4-2" ], [ "A0A1B0GST0-1", "protein_xref_mgi", "3030400", "Olfr566" ], [ "P01942-1", "protein_xref_mgi", "96015", "Hba-a1" ], [ "P03899-1", "protein_xref_mgi", "102499", "mt-Nd3" ], [ "O35153-1", "protein_xref_mgi", "1913128", "Bet1l" ], [ "P03893-1", "protein_xref_mgi", "102500", "mt-Nd2" ], [ "Q9QYH9-1", "protein_xref_mgi", "1355317", "Tnfsf14" ], [ "P52479-1", "protein_xref_mgi", "894652", "Usp10" ], [ "A0A1Y7VJ58-1", "protein_xref_mgi", "3779750", "Gm7544" ], [ "Q9QYH6-1", "protein_xref_mgi", "1930187", "Maged1" ], [ "Q3SXJ3-1", "protein_xref_mgi", "3031043", "Olfr1209" ], [ "O08537-1", "protein_xref_mgi", "109392", "Esr2" ], [ "Q08AU9-1", "protein_xref_mgi", "1916316", "1810010H24Rik" ], [ "Q08AU7-1", "protein_xref_mgi", "1915765", "Myadml2" ], [ "Q5EBH1-1", "protein_xref_mgi", "1926375", "Rassf5" ], [ "A0A087WSM5-1", "protein_xref_mgi", "5579755", "Gm29049" ], [ "Q61409-1", "protein_xref_mgi", "1333863", "Pde3b" ], [ "A2AVK5-1", "protein_xref_mgi", "3031068", "Olfr1234" ], [ "Q80YU0-1", "protein_xref_mgi", "3607711", "Abhd16b" ], [ "Q61400-1", "protein_xref_mgi", "1347248", "Ceacam10" ], [ "Q61406-1", "protein_xref_mgi", "2138169", "Cfhr1" ], [ "Q5SRT8-1", "protein_xref_mgi", "2685723", "Ccnjl" ], [ "P70414-1", "protein_xref_mgi", "107956", "Slc8a1" ], [ "P70412-1", "protein_xref_mgi", "1202881", "Cuzd1" ], [ "A0A140LIA7-1", "protein_xref_mgi", "5588956", "Gm29797" ], [ "P70419-1", "protein_xref_mgi", "894695", "Galnt3" ], [ "Q9EP78-1", "protein_xref_mgi", "1891767", "Chst7" ], [ "Q9EP79-1", "protein_xref_mgi", "2148512", "Vmn1r52" ], [ "Q3URK3-1", "protein_xref_mgi", "1098693", "Tet1" ], [ "Q9EP72-1", "protein_xref_mgi", "1920274", "Emc7" ], [ "Q9EP73-1", "protein_xref_mgi", "1926446", "Cd274" ], [ "Q9EP71-1", "protein_xref_mgi", "1922896", "Rai14" ], [ "Q9EP75-1", "protein_xref_mgi", "1927669", "Cyp4f14" ], [ "Q3URK1-1", "protein_xref_mgi", "1925715", "Ccdc190" ], [ "S4R213-1", "protein_xref_mgi", "2448566", "Lactbl1" ], [ "P53702-1", "protein_xref_mgi", "106911", "Hccs" ], [ "Q8R349-1", "protein_xref_mgi", "1917207", "Cdc16" ], [ "Q8R344-1", "protein_xref_mgi", "1919904", "Ccdc12" ], [ "O08911-1", "protein_xref_mgi", "1353438", "Mapk12" ], [ "Q80WC9-1", "protein_xref_mgi", "2442517", "Aasdh" ], [ "O08912-1", "protein_xref_mgi", "894693", "Galnt1" ], [ "O08915-1", "protein_xref_mgi", "109622", "Aip" ], [ "O08914-1", "protein_xref_mgi", "109609", "Faah" ], [ "O08917-1", "protein_xref_mgi", "1100500", "Flot1" ], [ "Q80WC3-1", "protein_xref_mgi", "3648294", "Tnrc18" ], [ "O08918-1", "protein_xref_mgi", "1095734", "Ccng2" ], [ "Q80WC1-1", "protein_xref_mgi", "2444236", "Ubn2" ], [ "Q80WC7-1", "protein_xref_mgi", "2443267", "Agfg2" ], [ "Q9JHY4-1", "protein_xref_mgi", "2445041", "Wfdc15b" ], [ "Q91ZK4-1", "protein_xref_mgi", "2153518", "Dmbx1" ], [ "Q91ZK0-1", "protein_xref_mgi", "2153466", "Tfap2d" ], [ "Q9D4U7-1", "protein_xref_mgi", "1922592", "4930556J24Rik" ], [ "Q9D4U4-1", "protein_xref_mgi", "1922521", "H2al3" ], [ "A0A3Q4EGJ1-1", "protein_xref_mgi", "3647191", "Gm5155" ], [ "P19070-1", "protein_xref_mgi", "88489", "Cr2" ], [ "Q8BZM0-1", "protein_xref_mgi", "2385619", "Klhl12" ], [ "Q8BZM1-1", "protein_xref_mgi", "2141180", "Glmn" ], [ "Q4VC33-1", "protein_xref_mgi", "1891748", "Maea" ], [ "Q66GT5-1", "protein_xref_mgi", "1913711", "Ptpmt1" ], [ "P50429-1", "protein_xref_mgi", "88075", "Arsb" ], [ "Q8BTJ4-1", "protein_xref_mgi", "2682634", "Enpp4" ], [ "Q99LV7-1", "protein_xref_mgi", "1919334", "Pigx" ], [ "Q4G5Y1-1", "protein_xref_mgi", "1916804", "Klhdc2" ], [ "P50427-1", "protein_xref_mgi", "98438", "Sts" ] ] }, "readme": "Name\n - Mouse UniProtKB Xref MGI\n\nVersion\n - 1.7.10\n\nCreated on\n - 2019-03-15T12:11:47.098435\n\nModified on\n - 2020-04-10T12:39:06.868276\n\nCreated by\n - Jeet Vora [jeetvora@gwu.edu], Rahi Navelkar [rsn13@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Xavier Holmes [xavierh@email.gwu.edu]\n\nAuthors\n - Maria Martin [martin@ebi.ac.uk], Preethi Vasudev [pvasudev@ebi.ac.uk]\n\nChecksum\n - \n\nUsability Domain\n - The Mouse UniProtKB Xref MGI contains mouse [taxid:10090] UniProtKB canonical accessions cross-referenced to MGI database accessions/identifiers. The dataset is derived from 2019-09 UniProtKB release. If you use this dataset please provide proper attribution to EMBL-EBI-UniProtKB and GlyGen\n - MGI is the international database resource for the laboratory mouse, providing integrated genetic, genomic, and biological data to facilitate the study of mouse health and disease.\n\nDescription Domain\n Keywords\n - gene symbol\n - gene name\n - MGI\n - cross-reference\n\n Pipeline Steps\n - Step-1: The script loads the UniProtKB canonical accessions that are cross-referenced to MGI database accessions/identifiers from the triplestore containing triples from nt file and extracts the data as a csv dataset\n\nExecution Domain\n Scripts - https://github.com/GW-HIVE/glygen-backend-integration/blob/master/pipeline/integrator/make-protein-dataset.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: uniprot-proteome-mus-musculus.nt\n URI: https://data.glygen.org/ln2wwwdata/source/uniprot-proteome-mus-musculus.nt\n Name: mouse_protein_masterlist.csv\n URI: https://data.glygen.org/ln2wwwdata/reviewed/mouse_protein_masterlist.csv\n Output Subdomain\n Name: mouse_protein_xref_mgi.csv\n URI: http://data.glygen.org/ln2wwwdata/reviewed/mouse_protein_xref_mgi.csv\n Name: mouse_protein_xref_mgi.stat.csv\n URI: http://data.glygen.org/ln2wwwdata/reviewed/mouse_protein_xref_mgi.stat.csv\n\nFields\n Name: \"uniprotkb_canonical_ac\"\n Description: \"\"\n Unique Values: \"21795\"\n Name: \"xref_label\"\n Description: \"Label/Name associated with x-ref\"\n Unique Values: \"22149\"\n Name: \"xref_id\"\n Description: \"ID of the X-ref\"\n Unique Values: \"22088\"\n Name: \"xref_key\"\n Description: \"Source key associated to the xref_id\"\n Unique Values: \"1\"", "downloadurl": "/ln2data/releases/data/v-1.7.10/reviewed/mouse_protein_xref_mgi.csv" }