{ "bcoid": "GLY_000099", "title": "Human UniProtKB Xref ChEMBL", "description": "The Human UniprotKB Xref ChEMBL contains human [taxid:9606] UniProtKB canonical accessions cross-referenced ...", "filename": "human_protein_xref_chembl.csv", "filetype": "csv", "categories": { "species": "Homo sapiens", "molecule": "Protein", "tags": "Chembl cross-references", "file_type": "csv", "status": "Reviewed", "scope": "internal" }, "minitable": { "content": [ [ "P30613-1...", "protein_xref..." ], [ "Q15573-1...", "protein_xref..." ] ], "headers": [ "uniprotkb_ca...", "xref_key..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "uniprotkb_canonical_ac" }, { "type": "string", "label": "xref_key" }, { "type": "string", "label": "xref_id" }, { "type": "string", "label": "xref_label" } ], [ "P30613-1", "protein_xref_chembl", "CHEMBL1075126", "" ], [ "Q15573-1", "protein_xref_chembl", "CHEMBL4105882", "" ], [ "Q9H999-1", "protein_xref_chembl", "CHEMBL3407328", "" ], [ "P23919-1", "protein_xref_chembl", "CHEMBL4388", "" ], [ "Q9C0H9-5", "protein_xref_chembl", "CHEMBL2150836", "" ], [ "Q00537-1", "protein_xref_chembl", "CHEMBL5790", "" ], [ "Q00536-1", "protein_xref_chembl", "CHEMBL4597", "" ], [ "Q00532-1", "protein_xref_chembl", "CHEMBL5789", "" ], [ "Q96J66-1", "protein_xref_chembl", "CHEMBL2073702", "" ], [ "O00337-1", "protein_xref_chembl", "CHEMBL5551", "" ], [ "Q8WTV0-1", "protein_xref_chembl", "CHEMBL1914272", "" ], [ "P08842-1", "protein_xref_chembl", "CHEMBL3559", "" ], [ "P03891-1", "protein_xref_chembl", "CHEMBL2363065", "" ], [ "P03897-1", "protein_xref_chembl", "CHEMBL2363065", "" ], [ "P02768-1", "protein_xref_chembl", "CHEMBL3253", "" ], [ "P20645-1", "protein_xref_chembl", "CHEMBL5788", "" ], [ "P24863-1", "protein_xref_chembl", "CHEMBL3038474", "" ], [ "P24863-1", "protein_xref_chembl", "CHEMBL3883323", "" ], [ "P02763-1", "protein_xref_chembl", "CHEMBL4285", "" ], [ "P02766-1", "protein_xref_chembl", "CHEMBL3194", "" ], [ "Q9UQ05-1", "protein_xref_chembl", "CHEMBL2362996", "" ], [ "Q9UJ71-1", "protein_xref_chembl", "CHEMBL2176853", "" ], [ "P35579-1", "protein_xref_chembl", "CHEMBL2189151", "" ], [ "O15254-1", "protein_xref_chembl", "CHEMBL4105817", "" ], [ "P41180-1", "protein_xref_chembl", "CHEMBL1878", "" ], [ "P29401-1", "protein_xref_chembl", "CHEMBL4983", "" ], [ "P07900-1", "protein_xref_chembl", "CHEMBL3880", "" ], [ "Q01118-1", "protein_xref_chembl", "CHEMBL3585", "" ], [ "Q9UK17-1", "protein_xref_chembl", "CHEMBL1964", "" ], [ "Q92831-1", "protein_xref_chembl", "CHEMBL5500", "" ], [ "Q92830-1", "protein_xref_chembl", "CHEMBL5501", "" ], [ "P21452-1", "protein_xref_chembl", "CHEMBL2327", "" ], [ "P00540-1", "protein_xref_chembl", "CHEMBL1075184", "" ], [ "Q9H3M0-1", "protein_xref_chembl", "CHEMBL2362996", "" ], [ "Q9Y6E0-1", "protein_xref_chembl", "CHEMBL5082", "" ], [ "A8TX70-1", "protein_xref_chembl", "CHEMBL2364188", "" ], [ "P19099-1", "protein_xref_chembl", "CHEMBL2722", "" ], [ "P04035-1", "protein_xref_chembl", "CHEMBL402", "" ], [ "Q9UKZ1-1", "protein_xref_chembl", "CHEMBL4105958", "" ], [ "Q9NY47-1", "protein_xref_chembl", "CHEMBL3896", "" ], [ "Q8WYB5-1", "protein_xref_chembl", "CHEMBL3774300", "" ], [ "O60741-1", "protein_xref_chembl", "CHEMBL1795171", "" ], [ "Q9NWM0-1", "protein_xref_chembl", "CHEMBL2176769", "" ], [ "Q9NRH2-1", "protein_xref_chembl", "CHEMBL1908384", "" ], [ "P41217-1", "protein_xref_chembl", "CHEMBL3712870", "" ], [ "P41212-1", "protein_xref_chembl", "CHEMBL2401606", "" ], [ "Q92523-1", "protein_xref_chembl", "CHEMBL2216739", "" ], [ "P27448-5", "protein_xref_chembl", "CHEMBL5600", "" ], [ "P07202-1", "protein_xref_chembl", "CHEMBL1839", "" ], [ "Q6E213-1", "protein_xref_chembl", "CHEMBL2375204", "" ], [ "O75164-1", "protein_xref_chembl", "CHEMBL5896", "" ], [ "P30874-1", "protein_xref_chembl", "CHEMBL1804", "" ], [ "P06865-1", "protein_xref_chembl", "CHEMBL1250415", "" ], [ "P11597-1", "protein_xref_chembl", "CHEMBL3572", "" ], [ "Q13233-1", "protein_xref_chembl", "CHEMBL3956", "" ], [ "Q13237-1", "protein_xref_chembl", "CHEMBL2896", "" ], [ "Q00535-1", "protein_xref_chembl", "CHEMBL4036", "" ], [ "P08123-1", "protein_xref_chembl", "CHEMBL2685", "" ], [ "Q00534-1", "protein_xref_chembl", "CHEMBL2508", "" ], [ "P10912-1", "protein_xref_chembl", "CHEMBL1976", "" ], [ "A4D0S4-1", "protein_xref_chembl", "CHEMBL2364187", "" ], [ "P23743-1", "protein_xref_chembl", "CHEMBL4105787", "" ], [ "P48147-1", "protein_xref_chembl", "CHEMBL3202", "" ], [ "P48145-1", "protein_xref_chembl", "CHEMBL1293293", "" ], [ "Q99519-1", "protein_xref_chembl", "CHEMBL2726", "" ], [ "Q96RU2-1", "protein_xref_chembl", "CHEMBL2157853", "" ], [ "P21675-1", "protein_xref_chembl", "CHEMBL3217390", "" ], [ "P50391-1", "protein_xref_chembl", "CHEMBL4877", "" ], [ "P00558-1", "protein_xref_chembl", "CHEMBL2886", "" ], [ "Q13641-1", "protein_xref_chembl", "CHEMBL3712934", "" ], [ "Q9NS40-1", "protein_xref_chembl", "CHEMBL2362996", "" ], [ "Q02127-1", "protein_xref_chembl", "CHEMBL1966", "" ], [ "P21217-1", "protein_xref_chembl", "CHEMBL3269", "" ], [ "Q9UBM7-1", "protein_xref_chembl", "CHEMBL2169735", "" ], [ "P48556-1", "protein_xref_chembl", "CHEMBL2364701", "" ], [ "O15066-1", "protein_xref_chembl", "CHEMBL6109", "" ], [ "P07098-1", "protein_xref_chembl", "CHEMBL1796", "" ], [ "P07099-1", "protein_xref_chembl", "CHEMBL1968", "" ], [ "A6NNZ2-1", "protein_xref_chembl", "CHEMBL3832942", "" ], [ "Q12830-1", "protein_xref_chembl", "CHEMBL3085621", "" ], [ "Q06609-1", "protein_xref_chembl", "CHEMBL2034807", "" ], [ "Q9BR01-1", "protein_xref_chembl", "CHEMBL1743298", "" ], [ "Q9Y294-1", "protein_xref_chembl", "CHEMBL3392950", "" ], [ "Q7Z601-1", "protein_xref_chembl", "CHEMBL2069161", "" ] ] }, "readme": "Name\n - Human UniProtKB Xref ChEMBL\n\nVersion\n - 1.7.10\n\nCreated on\n - 2019-03-15T12:09:44.596916\n\nModified on\n - 2020-04-10T11:33:38.480380\n\nCreated by\n - Jeet Vora [jeetvora@gwu.edu], Rahi Navelkar [rsn13@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Xavier Holmes [xavierh@email.gwu.edu]\n\nAuthors\n - Maria Martin [martin@ebi.ac.uk], Preethi Vasudev [pvasudev@ebi.ac.uk]\n\nChecksum\n - \n\nUsability Domain\n - The Human UniprotKB Xref ChEMBL contains human [taxid:9606] UniProtKB canonical accessions cross-referenced to ChEMBL database accessions/identifiers. The dataset is derived from 2019-09 UniProtKB release. If you use this dataset please provide proper attribution to EMBL-EBI-UniProtKB and GlyGen\n - ChEMBL or ChEMBLdb is a manually curated chemical database of bioactive molecules with drug-like properties.\n\nDescription Domain\n Keywords\n - bioactivity\n - ChEMBL\n - cross-reference\n\n Pipeline Steps\n - Step-1: The script loads the UniProtKB canonical accessions that are cross-referenced to ChEMBL database accessions/identifiers from the triplestore containing triples from nt file and extracts the data as a csv dataset\n\nExecution Domain\n Scripts - https://github.com/GW-HIVE/glygen-backend-integration/blob/master/pipeline/integrator/make-protein-dataset.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: uniprot-proteome-homo-sapiens.nt\n URI: https://data.glygen.org/ln2wwwdata/source/uniprot-proteome-homo-sapiens.nt\n Name: human_protein_masterlist.csv\n URI: https://data.glygen.org/ln2wwwdata/reviewed/human_protein_masterlist.csv\n Output Subdomain\n Name: human_protein_xref_chembl.csv\n URI: http://data.glygen.org/ln2wwwdata/reviewed/human_protein_xref_chembl.csv\n Name: human_protein_xref_chembl.stat.csv\n URI: http://data.glygen.org/ln2wwwdata/reviewed/human_protein_xref_chembl.stat.csv\n\nFields\n Name: \"uniprotkb_canonical_ac\"\n Description: \"\"\n Unique Values: \"3612\"\n Name: \"xref_label\"\n Description: \"Label/Name associated with x-ref\"\n Unique Values: \"1\"\n Name: \"xref_id\"\n Description: \"ID of the X-ref\"\n Unique Values: \"3436\"\n Name: \"xref_key\"\n Description: \"Source key associated to the xref_id\"\n Unique Values: \"1\"", "downloadurl": "/ln2data/releases/data/v-1.7.10/reviewed/human_protein_xref_chembl.csv" }