{
    "bcoid": "GLY_000437",
    "title": "SARS-CoV1 Protein Names (NCBI RefSeq)",
    "description": "The SARS coronavirus (SARS-CoV-1) Protein Names (NCBI RefSeq) dataset contains sarscov1 [taxid:694009] ...",
    "filename": "sarscov1_protein_proteinnames_refseq.csv",
    "filetype": "csv",
    "categories": {
        "species": "SARS coronavirus (SARS-CoV-1)",
        "molecule": "Protein",
        "tags": "Protein Names",
        "file_type": "csv",
        "status": "Reviewed",
        "scope": "internal"
    },
    "minitable": {
        "content": [
            [
                "P59596-1...",
                "NP_828855.1..."
            ],
            [
                "P59594-1...",
                "NP_828851.1..."
            ]
        ],
        "headers": [
            "uniprotkb_ca...",
            "refseq_ac..."
        ],
        "colwidth": [
            "40%",
            "20%"
        ]
    },
    "sampledata": {
        "type": "table",
        "data": [
            [
                {
                    "type": "string",
                    "label": "uniprotkb_canonical_ac"
                },
                {
                    "type": "string",
                    "label": "refseq_ac"
                },
                {
                    "type": "string",
                    "label": "refseq_protein_name"
                }
            ],
            [
                "P59596-1",
                "NP_828855.1",
                "matrix protein"
            ],
            [
                "P59594-1",
                "NP_828851.1",
                "E2 glycoprotein precursor"
            ],
            [
                "P59594-1",
                "NP_828851.1",
                "spike glycoprotein"
            ],
            [
                "P59595-1",
                "NP_828858.1",
                "nucleocapsid protein"
            ],
            [
                "Q80H93-1",
                "NP_849177.1",
                "hypothetical protein sars8b"
            ],
            [
                "P59635-1",
                "NP_828857.1",
                "hypothetical protein sars7a"
            ],
            [
                "Q7TFA1-1",
                "NP_849175.1",
                "hypothetical protein sars7b"
            ],
            [
                "Q7TFA0-1",
                "NP_849176.1",
                "hypothetical protein sars8a"
            ],
            [
                "P59633-1",
                "NP_828853.1",
                "hypothetical protein sars3b"
            ],
            [
                "P59632-1",
                "NP_828852.2",
                "hypothetical protein sars3a"
            ],
            [
                "P59637-1",
                "NP_828854.1",
                "protein E"
            ],
            [
                "P59637-1",
                "NP_828854.1",
                "protein sM; small envelope protein"
            ],
            [
                "P59636-1",
                "NP_828859.1",
                "hypothetical protein sars9b"
            ],
            [
                "P59634-1",
                "NP_828856.1",
                "hypothetical protein sars6"
            ]
        ]
    },
    "readme": "Name\n   - SARS-CoV1 Protein Names (NCBI RefSeq)\n\nVersion\n   - 1.7.10\n\nCreated on\n  - 2020-03-15T13:32:44.009025\n\nModified on\n   - 2020-04-09T18:47:04.482704\n\nCreated by\n   - Jeet Vora [jeetvora@gwu.edu], Rahi Navelkar [rsn13@gwu.edu], Robel Kahsay [rykahsay@gwu.edu]\n\nAuthors\n   - \n\nChecksum\n   - \n\nUsability Domain\n   - The SARS coronavirus (SARS-CoV-1) Protein Names (NCBI RefSeq) dataset contains sarscov1 [taxid:694009] protein names (primary and other alternative/synonym protein names) from NCBI RefSeq database.  The dataset is derived from NCBI RefSeq Release 96, September 9, 2019. The dataset is derived from NCBI RefSeq Release 96, September 9, 2019. If you use this dataset please provide proper attribution to NCBI RefSeq and GlyGen\n\nDescription Domain\n   Keywords\n   - protein names\n   - NCBI RefSeq\n\n   Pipeline Steps\n   - Step-1: The script parses the NCBI RefSeq gpff files to extract the protein names and then maps the NCBI RefSeq accesion to the UniProtKB Canonical accessions\n\nExecution Domain\n   Scripts   - https://github.com/GW-HIVE/glygen-backend-integration/blob/master/pipeline/integrator/make-protein-dataset.py\n\n\n   Software Prerequisites\n      Name: Python\n      Version: 2.7.5\n      URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n   Input Subdomain\n      Name: refseq_protein_all_viral.gpff\n      URI: https://data.glygen.org/ln2data/releases/data/v-1.7.10/source/refseq_protein_all_viral.gpff\n      Name: sarscov1_protein_xref_refseq.csv\n      URI: https://data.glygen.org/ln2data/releases/data/v-1.7.10/reviewed/sarscov1_protein_xref_refseq.csv\n   Output Subdomain\n      Name: sarscov1_protein_proteinnames_refseq.csv\n      URI: http://data.glygen.org/ln2data/releases/data/v-1.7.10/reviewed/sarscov1_protein_proteinnames_refseq.csv\n      Name: sarscov1_protein_proteinnames_refseq.stat.csv\n      URI: http://data.glygen.org/ln2data/releases/data/v-1.7.10/reviewed/sarscov1_protein_proteinnames_refseq.stat.csv\n\nFields\n      Name: \"uniprotkb_canonical_ac\"\n     Description: \"\"\n      Unique Values: \"12\"\n      Name: \"refseq_ac\"\n     Description: \"Accession in the NCBI RefSeq database\"\n      Unique Values: \"12\"\n      Name: \"refseq_protein_name\"\n     Description: \"Name of the protein in NCBI RefSeq database\"\n      Unique Values: \"14\"",
    "downloadurl": "/ln2data/releases/data/v-1.7.10/reviewed/sarscov1_protein_proteinnames_refseq.csv"
}