{ "bcoid": "GLY_000254", "title": "Mouse Phosphorylation Sites (UniProtKB)", "description": "The Mouse Phosphorylation Sites (UniProtKB) dataset contains mouse [taxid:10090] UniProtKB canonical ...", "filename": "mouse_proteoform_phosphorylation_sites_uniprotkb.csv", "filetype": "csv", "categories": { "species": "Mus musculus", "molecule": "Proteoform", "tags": "Phosphorylation Sites", "file_type": "csv", "status": "Reviewed", "scope": "internal" }, "minitable": { "content": [ [ "Q8BKX1-1...", "361..." ], [ "Q8BKX1-1...", "455..." ] ], "headers": [ "uniprotkb_ca...", "phosphorylat..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "uniprotkb_canonical_ac" }, { "type": "string", "label": "phosphorylation_site_uniprotkb" }, { "type": "string", "label": "amino_acid" }, { "type": "string", "label": "kinase_uniprotkb_canonical_ac" }, { "type": "string", "label": "kinase_gene_name" }, { "type": "string", "label": "xref_key" }, { "type": "string", "label": "xref_id" }, { "type": "string", "label": "src_xref_key" }, { "type": "string", "label": "src_xref_id" }, { "type": "string", "label": "phosphorylated_residue" }, { "type": "string", "label": "phosphorylation_annotation" }, { "type": "string", "label": "eco_id" } ], [ "Q8BKX1-1", "361", "Thr", "", "", "protein_xref_uniprotkb", "Q8BKX1", "protein_xref_uniprotkb", "Q8BKX1", "Phosphothreonine", "Phosphothreonine", "" ], [ "Q8BKX1-1", "455", "Ser", "", "", "protein_xref_uniprotkb", "Q8BKX1", "protein_xref_uniprotkb", "Q8BKX1", "Phosphoserine", "Phosphoserine", "" ], [ "Q8BKX1-1", "262", "Ser", "", "", "protein_xref_uniprotkb", "Q8BKX1", "protein_xref_uniprotkb", "Q8BKX1", "Phosphoserine", "Phosphoserine", "" ], [ "Q8BKX1-1", "396", "Ser", "", "", "protein_xref_uniprotkb", "Q8BKX1", "protein_xref_uniprotkb", "Q8BKX1", "Phosphoserine", "Phosphoserine", "" ], [ "Q8BKX1-1", "337", "Ser", "", "", "protein_xref_uniprotkb", "Q8BKX1", "protein_xref_uniprotkb", "Q8BKX1", "Phosphoserine", "Phosphoserine", "" ], [ "Q8BKX1-1", "367", "Ser", "", "", "protein_xref_uniprotkb", "Q8BKX1", "protein_xref_uniprotkb", "Q8BKX1", "Phosphoserine", "Phosphoserine", "" ], [ "Q8BKX1-1", "324", "Ser", "", "", "protein_xref_uniprotkb", "Q8BKX1", "protein_xref_uniprotkb", "Q8BKX1", "Phosphoserine", "Phosphoserine", "" ], [ "Q8BKX1-1", "341", "Thr", "", "", "protein_xref_uniprotkb", "Q8BKX1", "protein_xref_uniprotkb", "Q8BKX1", "Phosphothreonine", "Phosphothreonine", "" ], [ "Q8BKX1-1", "347", "Ser", "", "", "protein_xref_uniprotkb", "Q8BKX1", "protein_xref_uniprotkb", "Q8BKX1", "Phosphoserine", "Phosphoserine", "" ], [ "Q8BKX1-1", "326", "Ser", "", "", "protein_xref_uniprotkb", "Q8BKX1", "protein_xref_uniprotkb", "Q8BKX1", "Phosphoserine", "Phosphoserine", "" ], [ "Q8BKX1-1", "385", "Ser", "", "", "protein_xref_uniprotkb", "Q8BKX1", "protein_xref_uniprotkb", "Q8BKX1", "Phosphoserine", "Phosphoserine", "" ], [ "P70372-1", "202", "Ser", "", "", "protein_xref_uniprotkb", "P70372", "protein_xref_uniprotkb", "P70372", "Phosphoserine", "Phosphoserine", "" ], [ "Q03160-1", "341", "Tyr", "", "", "protein_xref_uniprotkb", "Q03160", "protein_xref_uniprotkb", "Q03160", "Phosphotyrosine", "Phosphotyrosine; by FAK1", "" ], [ "Q03160-1", "364", "Ser", "", "", "protein_xref_uniprotkb", "Q03160", "protein_xref_uniprotkb", "Q03160", "Phosphoserine", "Phosphoserine", "" ], [ "Q03160-1", "187", "Tyr", "", "", "protein_xref_uniprotkb", "Q03160", "protein_xref_uniprotkb", "Q03160", "Phosphotyrosine", "Phosphotyrosine; by FAK1", "" ], [ "Q6PDN3-1", "1460", "Ser", "", "", "protein_xref_uniprotkb", "Q6PDN3", "protein_xref_uniprotkb", "Q6PDN3", "Phosphoserine", "Phosphoserine", "" ], [ "Q6PDN3-1", "333", "Ser", "", "", "protein_xref_uniprotkb", "Q6PDN3", "protein_xref_uniprotkb", "Q6PDN3", "Phosphoserine", "Phosphoserine", "" ], [ "Q6PDN3-1", "355", "Ser", "", "", "protein_xref_uniprotkb", "Q6PDN3", "protein_xref_uniprotkb", "Q6PDN3", "Phosphoserine", "Phosphoserine", "" ], [ "Q6PDN3-1", "1782", "Ser", "", "", "protein_xref_uniprotkb", "Q6PDN3", "protein_xref_uniprotkb", "Q6PDN3", "Phosphoserine", "Phosphoserine", "" ], [ "Q6PDN3-1", "1781", "Ser", "", "", "protein_xref_uniprotkb", "Q6PDN3", "protein_xref_uniprotkb", "Q6PDN3", "Phosphoserine", "Phosphoserine", "" ], [ "Q6PDN3-1", "1801", "Ser", "", "", "protein_xref_uniprotkb", "Q6PDN3", "protein_xref_uniprotkb", "Q6PDN3", "Phosphoserine", "Phosphoserine", "" ], [ "Q6PDN3-1", "1800", "Thr", "", "", "protein_xref_uniprotkb", "Q6PDN3", "protein_xref_uniprotkb", "Q6PDN3", "Phosphothreonine", "Phosphothreonine", "" ], [ "Q6PDN3-1", "935", "Ser", "", "", "protein_xref_uniprotkb", "Q6PDN3", "protein_xref_uniprotkb", "Q6PDN3", "Phosphoserine", "Phosphoserine", "" ], [ "Q6PDN3-1", "1798", "Ser", "", "", "protein_xref_uniprotkb", "Q6PDN3", "protein_xref_uniprotkb", "Q6PDN3", "Phosphoserine", "Phosphoserine", "" ], [ "Q6PDN3-1", "1795", "Ser", "", "", "protein_xref_uniprotkb", "Q6PDN3", "protein_xref_uniprotkb", "Q6PDN3", "Phosphoserine", "Phosphoserine", "" ], [ "Q9Z120-1", "21", "Ser", "", "", "protein_xref_uniprotkb", "D3Z7D2", "protein_xref_uniprotkb", "D3Z7D2", "Phosphoserine", "Phosphoserine; by PKB and RPS6KA3", "" ], [ "P49446-1", "715", "Tyr", "", "", "protein_xref_uniprotkb", "A0A1B0GRT6", "protein_xref_uniprotkb", "A0A1B0GRT6", "Phosphotyrosine", "Phosphotyrosine", "" ], [ "Q5EE38-1", "25", "Ser", "", "", "protein_xref_uniprotkb", "Q5EE38", "protein_xref_uniprotkb", "Q5EE38", "Phosphoserine", "Phosphoserine", "" ], [ "Q5EE38-1", "317", "Ser", "", "", "protein_xref_uniprotkb", "Q5EE38", "protein_xref_uniprotkb", "Q5EE38", "Phosphoserine", "Phosphoserine", "" ], [ "Q5EE38-1", "313", "Ser", "", "", "protein_xref_uniprotkb", "Q5EE38", "protein_xref_uniprotkb", "Q5EE38", "Phosphoserine", "Phosphoserine", "" ], [ "Q8C0J2-1", "287", "Ser", "", "", "protein_xref_uniprotkb", "Q8C0J2", "protein_xref_uniprotkb", "Q8C0J2", "Phosphoserine", "Phosphoserine", "" ], [ "Q8C0J2-1", "269", "Ser", "", "", "protein_xref_uniprotkb", "Q8C0J2", "protein_xref_uniprotkb", "Q8C0J2", "Phosphoserine", "Phosphoserine", "" ], [ "Q8C0J2-1", "139", "Ser", "", "", "protein_xref_uniprotkb", "Q8C0J2", "protein_xref_uniprotkb", "Q8C0J2", "Phosphoserine", "Phosphoserine", "" ], [ "Q9Z0F8-1", "794", "Ser", "", "", "protein_xref_uniprotkb", "Q9Z0F8", "protein_xref_uniprotkb", "Q9Z0F8", "Phosphoserine", "Phosphoserine", "" ], [ "Q9Z0F8-1", "735", "Thr", "", "", "protein_xref_uniprotkb", "Q9Z0F8", "protein_xref_uniprotkb", "Q9Z0F8", "Phosphothreonine", "Phosphothreonine", "" ], [ "Q9Z0F8-1", "770", "Ser", "", "", "protein_xref_uniprotkb", "Q9Z0F8", "protein_xref_uniprotkb", "Q9Z0F8", "Phosphoserine", "Phosphoserine", "" ], [ "P12023-1", "441", "Ser", "", "", "protein_xref_uniprotkb", "P12023", "protein_xref_uniprotkb", "P12023", "Phosphoserine", "Phosphoserine", "" ], [ "Q3UMR0-1", "969", "Ser", "", "", "protein_xref_uniprotkb", "Q3UMR0", "protein_xref_uniprotkb", "Q3UMR0", "Phosphoserine", "Phosphoserine", "" ], [ "Q3UMR0-1", "961", "Ser", "", "", "protein_xref_uniprotkb", "Q3UMR0", "protein_xref_uniprotkb", "Q3UMR0", "Phosphoserine", "Phosphoserine", "" ], [ "Q3UMR0-1", "1022", "Thr", "", "", "protein_xref_uniprotkb", "Q3UMR0", "protein_xref_uniprotkb", "Q3UMR0", "Phosphothreonine", "Phosphothreonine", "" ], [ "O08715-1", "546", "Ser", "", "", "protein_xref_uniprotkb", "O08715", "protein_xref_uniprotkb", "O08715", "Phosphoserine", "Phosphoserine", "" ], [ "O08715-1", "55", "Ser", "", "", "protein_xref_uniprotkb", "O08715", "protein_xref_uniprotkb", "O08715", "Phosphoserine", "Phosphoserine", "" ], [ "O08715-1", "101", "Ser", "", "", "protein_xref_uniprotkb", "O08715", "protein_xref_uniprotkb", "O08715", "Phosphoserine", "Phosphoserine", "" ], [ "O08715-1", "103", "Ser", "", "", "protein_xref_uniprotkb", "O08715", "protein_xref_uniprotkb", "O08715", "Phosphoserine", "Phosphoserine", "" ], [ "O08715-1", "527", "Ser", "", "", "protein_xref_uniprotkb", "O08715", "protein_xref_uniprotkb", "O08715", "Phosphoserine", "Phosphoserine", "" ], [ "O08715-1", "401", "Thr", "", "", "protein_xref_uniprotkb", "O08715", "protein_xref_uniprotkb", "O08715", "Phosphothreonine", "Phosphothreonine", "" ], [ "O08715-1", "164", "Ser", "", "", "protein_xref_uniprotkb", "O08715", "protein_xref_uniprotkb", "O08715", "Phosphoserine", "Phosphoserine", "" ], [ "O08715-1", "487", "Thr", "", "", "protein_xref_uniprotkb", "O08715", "protein_xref_uniprotkb", "O08715", "Phosphothreonine", "Phosphothreonine", "" ], [ "P31750-1", "176", "Tyr", "", "", "protein_xref_uniprotkb", "P31750", "protein_xref_uniprotkb", "P31750", "Phosphotyrosine", "Phosphotyrosine; by TNK2", "" ], [ "P31750-1", "450", "Thr", "", "", "protein_xref_uniprotkb", "P31750", "protein_xref_uniprotkb", "P31750", "Phosphothreonine", "Phosphothreonine; by MTOR", "" ], [ "P31750-1", "129", "Ser", "", "", "protein_xref_uniprotkb", "P31750", "protein_xref_uniprotkb", "P31750", "Phosphoserine", "Phosphoserine; alternate", "" ], [ "Q8CJG0-1", "388", "Ser", "", "", "protein_xref_uniprotkb", "Q8CJG0", "protein_xref_uniprotkb", "Q8CJG0", "Phosphoserine", "Phosphoserine", "" ], [ "Q8CJG0-1", "829", "Ser", "", "", "protein_xref_uniprotkb", "Q8CJG0", "protein_xref_uniprotkb", "Q8CJG0", "Phosphoserine", "Phosphoserine", "" ], [ "Q91XC0-1", "143", "Ser", "", "", "protein_xref_uniprotkb", "Q91XC0", "protein_xref_uniprotkb", "Q91XC0", "Phosphoserine", "Phosphoserine", "" ], [ "Q91XC0-1", "89", "Ser", "", "", "protein_xref_uniprotkb", "Q91XC0", "protein_xref_uniprotkb", "Q91XC0", "Phosphoserine", "Phosphoserine", "" ], [ "Q91XC0-1", "272", "Ser", "", "", "protein_xref_uniprotkb", "Q91XC0", "protein_xref_uniprotkb", "Q91XC0", "Phosphoserine", "Phosphoserine", "" ], [ "Q91XC0-1", "129", "Ser", "", "", "protein_xref_uniprotkb", "Q91XC0", "protein_xref_uniprotkb", "Q91XC0", "Phosphoserine", "Phosphoserine", "" ], [ "Q91XC0-1", "185", "Ser", "", "", "protein_xref_uniprotkb", "Q91XC0", "protein_xref_uniprotkb", "Q91XC0", "Phosphoserine", "Phosphoserine", "" ], [ "A2BH40-1", "699", "Ser", "", "", "protein_xref_uniprotkb", "A2BH40", "protein_xref_uniprotkb", "A2BH40", "Phosphoserine", "Phosphoserine", "" ], [ "A2BH40-1", "1185", "Ser", "", "", "protein_xref_uniprotkb", "A2BH40", "protein_xref_uniprotkb", "A2BH40", "Phosphoserine", "Phosphoserine", "" ], [ "A2BH40-1", "605", "Ser", "", "", "protein_xref_uniprotkb", "A2BH40", "protein_xref_uniprotkb", "A2BH40", "Phosphoserine", "Phosphoserine", "" ], [ "A2BH40-1", "384", "Ser", "", "", "protein_xref_uniprotkb", "A2BH40", "protein_xref_uniprotkb", "A2BH40", "Phosphoserine", "Phosphoserine", "" ], [ "A2BH40-1", "1886", "Thr", "", "", "protein_xref_uniprotkb", "A2BH40", "protein_xref_uniprotkb", "A2BH40", "Phosphothreonine", "Phosphothreonine", "" ], [ "A2BH40-1", "56", "Ser", "", "", "protein_xref_uniprotkb", "A2BH40", "protein_xref_uniprotkb", "A2BH40", "Phosphoserine", "Phosphoserine", "" ], [ "A2BH40-1", "1605", "Ser", "", "", "protein_xref_uniprotkb", "A2BH40", "protein_xref_uniprotkb", "A2BH40", "Phosphoserine", "Phosphoserine", "" ], [ "A2BH40-1", "365", "Ser", "", "", "protein_xref_uniprotkb", "A2BH40", "protein_xref_uniprotkb", "A2BH40", "Phosphoserine", "Phosphoserine", "" ], [ "A2BH40-1", "765", "Ser", "", "", "protein_xref_uniprotkb", "A2BH40", "protein_xref_uniprotkb", "A2BH40", "Phosphoserine", "Phosphoserine", "" ], [ "A2BH40-1", "1236", "Ser", "", "", "protein_xref_uniprotkb", "A2BH40", "protein_xref_uniprotkb", "A2BH40", "Phosphoserine", "Phosphoserine", "" ], [ "A2BH40-1", "1927", "Ser", "", "", "protein_xref_uniprotkb", "A2BH40", "protein_xref_uniprotkb", "A2BH40", "Phosphoserine", "Phosphoserine", "" ], [ "A2BH40-1", "234", "Ser", "", "", "protein_xref_uniprotkb", "A2BH40", "protein_xref_uniprotkb", "A2BH40", "Phosphoserine", "Phosphoserine", "" ], [ "A2BH40-1", "77", "Ser", "", "", "protein_xref_uniprotkb", "A2BH40", "protein_xref_uniprotkb", "A2BH40", "Phosphoserine", "Phosphoserine", "" ], [ "A2BH40-1", "287", "Thr", "", "", "protein_xref_uniprotkb", "A2BH40", "protein_xref_uniprotkb", "A2BH40", "Phosphothreonine", "Phosphothreonine", "" ], [ "A2BH40-1", "731", "Ser", "", "", "protein_xref_uniprotkb", "A2BH40", "protein_xref_uniprotkb", "A2BH40", "Phosphoserine", "Phosphoserine", "" ], [ "A2BH40-1", "302", "Ser", "", "", "protein_xref_uniprotkb", "A2BH40", "protein_xref_uniprotkb", "A2BH40", "Phosphoserine", "Phosphoserine", "" ], [ "A2BH40-1", "1942", "Ser", "", "", "protein_xref_uniprotkb", "A2BH40", "protein_xref_uniprotkb", "A2BH40", "Phosphoserine", "Phosphoserine", "" ], [ "A2BH40-1", "773", "Ser", "", "", "protein_xref_uniprotkb", "A2BH40", "protein_xref_uniprotkb", "A2BH40", "Phosphoserine", "Phosphoserine", "" ], [ "A2BH40-1", "703", "Ser", "", "", "protein_xref_uniprotkb", "A2BH40", "protein_xref_uniprotkb", "A2BH40", "Phosphoserine", "Phosphoserine", "" ], [ "A2BH40-1", "697", "Ser", "", "", "protein_xref_uniprotkb", "A2BH40", "protein_xref_uniprotkb", "A2BH40", "Phosphoserine", "Phosphoserine", "" ], [ "A2BH40-1", "1874", "Thr", "", "", "protein_xref_uniprotkb", "A2BH40", "protein_xref_uniprotkb", "A2BH40", "Phosphothreonine", "Phosphothreonine", "" ], [ "B1AXD8-1", "55", "Ser", "", "", "protein_xref_uniprotkb", "B1AXD8", "protein_xref_uniprotkb", "B1AXD8", "Phosphoserine", "Phosphoserine", "" ], [ "B1AXD8-1", "18", "Ser", "", "", "protein_xref_uniprotkb", "B1AXD8", "protein_xref_uniprotkb", "B1AXD8", "Phosphoserine", "Phosphoserine", "" ], [ "B1AXD8-1", "21", "Ser", "", "", "protein_xref_uniprotkb", "B1AXD8", "protein_xref_uniprotkb", "B1AXD8", "Phosphoserine", "Phosphoserine", "" ], [ "A2CG63-1", "1028", "Thr", "", "", "protein_xref_uniprotkb", "A2CG63", "protein_xref_uniprotkb", "A2CG63", "Phosphothreonine", "Phosphothreonine", "" ], [ "A2CG63-1", "1031", "Ser", "", "", "protein_xref_uniprotkb", "A2CG63", "protein_xref_uniprotkb", "A2CG63", "Phosphoserine", "Phosphoserine", "" ] ] }, "readme": "Name\n - Mouse Phosphorylation Sites (UniProtKB)\n\nVersion\n - 1.7.10\n\nCreated on\n - 2019-09-06T14:06:38.981217\n\nModified on\n - 2020-04-10T12:46:17.110364\n\nCreated by\n - Jeet Vora [jeetvora@gwu.edu], Rahi Navelkar [rsn13@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Xavier Holmes [xavierh@email.gwu.edu]\n\nAuthors\n - Maria Martin [martin@ebi.ac.uk], Preethi Vasudev [pvasudev@ebi.ac.uk]\n\nChecksum\n - \n\nUsability Domain\n - The Mouse Phosphorylation Sites (UniProtKB) dataset contains mouse [taxid:10090] UniProtKB canonical accessions with information on reported and predicted phosphoryation sites with evidence in UniProtKB database. The dataset is derived from 2019-09 UniProtKB release. If you use this dataset please provide proper attribution to EMBL-EBI-UniProtKB and GlyGen\n\nDescription Domain\n Keywords\n - phosphoryation Sites\n - ptm processing\n - UniProtKB\n\n Pipeline Steps\n - Step-1: The script loads the phosphorylation information from the triplestore conatining triples from the nt file and extracts as a csv dataset\n\nExecution Domain\n Scripts - https://github.com/GW-HIVE/glygen-backend-integration/blob/master/pipeline/integrator/make-protein-dataset.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: uniprot-proteome-mus-musculus.nt\n URI: https://data.glygen.org/ln2data/releases/data/v-1.7.10/source/uniprot-proteome-mus-musculus.nt\n Name: mouse_protein_masterlist.csv\n URI: https://data.glygen.org/ln2data/releases/data/v-1.7.10/reviewed/mouse_protein_masterlist.csv\n Output Subdomain\n Name: mouse_proteoform_phosphorylation_sites_uniprotkb.csv\n URI: http://data.glygen.org/ln2data/releases/data/v-1.7.10/reviewed/mouse_proteoform_phosphorylation_sites_uniprotkb.csv\n Name: mouse_proteoform_phosphorylation_sites_uniprotkb.stat.csv\n URI: http://data.glygen.org/ln2data/releases/data/v-1.7.10/reviewed/mouse_proteoform_phosphorylation_sites_uniprotkb.stat.csv\n\nFields\n Name: \"uniprotkb_canonical_ac\"\n Description: \"\"\n Unique Values: \"7404\"\n Name: \"phosphorylation_site_uniprotkb\"\n Description: \"Site on the protein sequence of the UniProtKB entry where phosphorylation is observed\"\n Unique Values: \"2751\"\n Name: \"xref_id\"\n Description: \"ID of the X-ref\"\n Unique Values: \"7425\"\n Name: \"phosphorylation_annotation\"\n Description: \"The phosphorylation annotation in UniProtKB that provides more context and description of a phosphorylation event on a protein.\"\n Unique Values: \"547\"\n Name: \"kinase_gene_name\"\n Description: \"\"\n Unique Values: \"1\"\n Name: \"phosphorylated_residue\"\n Description: \"The amino acid that is modified by phosphorylation\"\n Unique Values: \"5\"\n Name: \"kinase_uniprotkb_canonical_ac\"\n Description: \"The UniProtKB canonical accession for the kinase enzyme that is phosphorylating the protein\"\n Unique Values: \"1\"\n Name: \"amino_acid\"\n Description: \"Three letter abbreviation code of the amino acid\"\n Unique Values: \"5\"\n Name: \"src_xref_key\"\n Description: \"Source Xref key\"\n Unique Values: \"1\"\n Name: \"src_xref_id\"\n Description: \"Source X-ref ID\"\n Unique Values: \"7425\"\n Name: \"eco_id\"\n Description: \"Evidence & Conclusion Ontology (ECO) identifier\"\n Unique Values: \"1\"\n Name: \"xref_key\"\n Description: \"Source key associated to the xref_id\"\n Unique Values: \"1\"", "downloadurl": "/ln2data/releases/data/v-1.7.10/reviewed/mouse_proteoform_phosphorylation_sites_uniprotkb.csv" }